Re: [Rdkit-discuss] Somthing wrong with MolDraw2DSVG

2019-11-06 Thread Paolo Tosco
Hi Zhang, this looks like a bug triggered by molecules whose Y size is very small, such as all molecules which are constituted by a single, horizontal bond: https://github.com/rdkit/rdkit/issues/2762 Cheers, p. On 11/04/19 07:14, Shengde wrote: Hi, I try to draw molecules in a grid

[Rdkit-discuss] Somthing wrong with MolDraw2DSVG

2019-11-03 Thread Shengde
Hi, I try to draw molecules in a grid and use the following code. Usually it works good. Howerver, when I try to draw some molecules with single atom like "Cl", I got a blank figure with nothing on it. As long as I add a more complex molecule to the smi_list like ["*Cl","*CC"], I got what I

[Rdkit-discuss] Somthing wrong with MolDraw2DSVG

2019-11-03 Thread Shengde
Hi, I try to draw molecules in a grid and use the following code. Usually it works good. Howerver, when I try to draw some molecules with single atom like "Cl", I got ablank figurewith nothing on it. As long as I add a more complex molecule to the smi_list like ["*Cl","*CC"], I got what I want