Re: [Rdkit-discuss] get ionic bonds

2020-08-10 Thread Greg Landrum
Please leave rdkit-discuss on your replies so that the entire discussion is public. The problem here is that [I-].[K+] is not a molecule. It's two separate ions. The SMILES does not imply any sort of bond between them. Here's the explanation of this from the Daylight Theory Manual ( https://www.da

Re: [Rdkit-discuss] get ionic bonds

2020-08-10 Thread Greg Landrum
Hi, The RDKit's valence model does not include explicit ionic bonds. There may be a useful workaround though... can you please provide an example molecule that you would like to work with? Thanks, -greg On Mon, Aug 10, 2020 at 11:09 AM Behnaz Hoseyni wrote: > Hello. Thank you for your very go

[Rdkit-discuss] get ionic bonds

2020-08-10 Thread Behnaz Hoseyni
Hello. Thank you for your very good module. I needed to find the ionic bonds of the molecules, but I could not find the correct order in Rdkit. GetBondType() only give single,Double, Triple & aromatic, But i need to get ionic bond.Please help me. thank you advance __