Dear Francesco,
I think you can highlight each molecules using highlightAtomLists option.
I wrote an example.
Following code was written in IPython notebook.
'''
from rdkit import Chem
from rdkit.Chem import rdBase
from rdkit.Chem import Draw
from rdkit.Chem.Draw import IPythonConsole
from rdkit
Dear All,
I just started using RDKit, and I am having some troubles using
Draw.MolsToGridImage.
I have a number of SMILES. My Aim is to plot them in the same file while
highlighting a particular substructure (I have the SMILES for it as well).
I managed to create the image with all the compounds
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