Re: [Rdkit-discuss] rejoining pairs of fragments after fragmenting a molecule

2021-04-04 Thread Francois Berenger
On 03/04/2021 00:03, Andrew Dalke wrote: Hi Ling, On Apr 2, 2021, at 16:23, Ling Chan wrote: Thank you Francois, I took a look at your code and borrowed parts of it to rejoin two molecules. It seems like my problem is solved. I eventually arrived at something like example 4 in

Re: [Rdkit-discuss] rejoining pairs of fragments after fragmenting a molecule

2021-04-02 Thread Andrew Dalke
Hi Ling, > On Apr 2, 2021, at 16:23, Ling Chan wrote: > > Thank you Francois, I took a look at your code and borrowed parts of it to > rejoin two molecules. It seems like my problem is solved. I eventually > arrived at something like example 4 in >

Re: [Rdkit-discuss] rejoining pairs of fragments after fragmenting a molecule

2021-04-02 Thread Ling Chan
Thank you Francois, I took a look at your code and borrowed parts of it to rejoin two molecules. It seems like my problem is solved. I eventually arrived at something like example 4 in https://www.programcreek.com/python/example/123334/rdkit.Chem.CombineMols (which I discovered a bit late).

Re: [Rdkit-discuss] rejoining pairs of fragments after fragmenting a molecule

2021-04-02 Thread Andrew Dalke
On Mar 31, 2021, at 21:55, Ling Chan wrote: > I am trying to do something that I think is quite simple, but I have not > figured out a simple way. Don't know if I am missing something. I am sure > that ultimately I can figure it out, but I wonder if there is a good way. If you can work in

Re: [Rdkit-discuss] rejoining pairs of fragments after fragmenting a molecule

2021-04-01 Thread Pavel Polishchuk
Ling Chan mailto:lingtrek...@gmail.com>> *Sent:* Thursday, April 1, 2021 5:08 PM *To:* Mark Mackey mailto:m...@cresset-group.com>> *Cc:* RDKit mailto:rdkit-discuss@lists.sourceforge.net>> *Subject:* Re: [Rdkit-discuss] rejoining pairs of fragments after fragmenti

Re: [Rdkit-discuss] rejoining pairs of fragments after fragmenting a molecule

2021-04-01 Thread Chuang, Kangway
From: Ling Chan Sent: Thursday, April 1, 2021 5:08 PM To: Mark Mackey Cc: RDKit Subject: Re: [Rdkit-discuss] rejoining pairs of fragments after fragmenting a molecule >> I did manage to achieve what I want by going through >> Chem.MolFragmentToSmiles and

Re: [Rdkit-discuss] rejoining pairs of fragments after fragmenting a molecule

2021-04-01 Thread Ling Chan
esset-group.com *web: > www.cresset-group.com > <https://urldefense.com/v3/__http://www.cresset-group.com/__;!!LQC6Cpwp!_TcJCf-sigb7LDzkbKrsrFcW9tvIZeaipJYFoxrlJcJu_i7ISOrtBw_r-FiTOxLSLc3HOA$> > skype: mark_cresset > > > > > > > > *From:* Ling Chan > *Sent:*

Re: [Rdkit-discuss] rejoining pairs of fragments after fragmenting a molecule

2021-04-01 Thread Ling Chan
> *Mark Mackey* >> >> *Chief Scientific Officer* >> >> *Cresset* >> >> New Cambridge House, Bassingbourn Road, Litlington, Cambridgeshire, SG8 >> 0SS, UK >> >> tel: +44 (0)1223 858890 mobile: +44 (0)7595 099165fax: +44 (0)1223 >&

Re: [Rdkit-discuss] rejoining pairs of fragments after fragmenting a molecule

2021-04-01 Thread Ling Chan
web: > www.cresset-group.comskype: mark_cresset > > > > > > > > *From:* Ling Chan > *Sent:* 31 March 2021 20:56 > *To:* RDKit > *Subject:* [Rdkit-discuss] rejoining pairs of fragments after fragmenting > a molecule > > > > Dear Colleagues, > &g

Re: [Rdkit-discuss] rejoining pairs of fragments after fragmenting a molecule

2021-04-01 Thread Mark Mackey via Rdkit-discuss
)7595 099165fax: +44 (0)1223 853667 email: m...@cresset-group.com<mailto:m...@cresset-group.com>web: www.cresset-group.com<http://www.cresset-group.com/>skype: mark_cresset From: Ling Chan Sent: 31 March 2021 20:56 To: RDKit Subject: [Rdkit-discuss] rejoining pairs of fra

Re: [Rdkit-discuss] rejoining pairs of fragments after fragmenting a molecule

2021-03-31 Thread Francois Berenger
On 01/04/2021 04:55, Ling Chan wrote: Dear Colleagues, I am trying to do something that I think is quite simple, but I have not figured out a simple way. Don't know if I am missing something. I am sure that ultimately I can figure it out, but I wonder if there is a good way. I fragmented a

[Rdkit-discuss] rejoining pairs of fragments after fragmenting a molecule

2021-03-31 Thread Ling Chan
Dear Colleagues, I am trying to do something that I think is quite simple, but I have not figured out a simple way. Don't know if I am missing something. I am sure that ultimately I can figure it out, but I wonder if there is a good way. I fragmented a molecule with some rules, using