Hi,
I'm trying to build RDKit on Arch Linux but make fails with RDKit_2013_06_1
and Git version with the error appended to the end of this message.
Interestingly it works without a problem on RDKit_2013_03_2 and
RDKit_2012_12_1 (didn't try earlier versions). Packege versions I'm using:
python2
On Fri, 16 Aug 2013 10:57:53 +0200
Samo Turk samo.t...@gmail.com wrote:
I'm trying to build RDKit on Arch Linux but make fails with RDKit_2013_06_1
and Git version with the error appended to the end of this message.
Interestingly it works without a problem on RDKit_2013_03_2 and
I actually used AUR package to compile RDKit_2012_12_1 and sucessfully
modified it to compile RDKit_2013_03_2, but it fails for RDKit_2013_06_1
and Git version. I guess there is a missing dependency since you managed to
compile it.. Do you have all packeges updated to latest versions? 64bit
what versions of flex and bison do you have installed?
-greg
On Fri, Aug 16, 2013 at 4:27 PM, Samo Turk samo.t...@gmail.com wrote:
I actually used AUR package to compile RDKit_2012_12_1 and sucessfully
modified it to compile RDKit_2013_03_2, but it fails for RDKit_2013_06_1
and Git
On Fri, 16 Aug 2013 19:03:19 +0200
Samo Turk samo.t...@gmail.com wrote:
Flex 2.5.37 and bison 3.0.
And apparently here lies the problem. Originally I was compiling rdkit on
my box using bison 2.7.1. A fresh attempt, with version 3.0, exits with
exactly the same errors as yours.
After
I definitely haven't tried it with bison 3.0 (and am kind of amazed that such a
version exists!)
You might try touching the .yy files in $RDBASE/Code/GraphMol/SmilesParse to
force bison to re-run, but I am still not sure that will work.
On Aug 16, 2013, at 7:39 PM, Mikolaj Kowalik
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