Hi Jason,
This isn't a duplicate of #435, it's a limitation of the embedding code.
The embedding code does *try* to obey the double bond stereo that you
provide, but it doesn't always succeed (particularly in rings) and, unlike
with atomic stereochemistry, there's nothing there to filter out
I don't know if this is a duplicate of
https://github.com/rdkit/rdkit/issues/435
I notice that ring double-bond stereo gets quietly ignored by the embedding
code. Trying to make cis and trans cyclododecene (choosing a large ring to
minimize any strain), and they both come out cis.
Using the
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