Re: [Rdkit-discuss] How to set rdMolStandardize.CleanupParameters.maxTautomer for tautomer canonicalization

2020-08-27 Thread Fiorella Ruggiu
Hi Paolo! Very helpful to know - I missed this in my google search. Thank you very much for your prompt answer and for implementing these changes :). Best, Fio On Thu, Aug 27, 2020 at 12:30 PM Paolo Tosco wrote: > Hi Fio, > > there is an open PR that addresses this and other issues with the >

Re: [Rdkit-discuss] How to set rdMolStandardize.CleanupParameters.maxTautomer for tautomer canonicalization

2020-08-27 Thread Paolo Tosco
Hi Fio, there is an open PR that addresses this and other issues with the TautomerEnumerator: https://github.com/rdkit/rdkit/pull/3327 As soon as it will be merged in the main trunk this functionality will be available. Hope that helps, cheers p. On Thu, Aug 27, 2020 at 9:08 PM Fiorella Ruggiu

[Rdkit-discuss] How to set rdMolStandardize.CleanupParameters.maxTautomer for tautomer canonicalization

2020-08-27 Thread Fiorella Ruggiu
Hi everyone, I am cleaning up molecules to import into our database and canonicalizing the tautomer using rdkit in python. Some cases result in a time-out and do not go into my except to be caught. I would like to try setting the maxTautomer to lower than 1000. I found there was no direct option