[Rdkit-discuss] Fresh install of RDKit not functioning

2017-10-04 Thread Jordan McCone
Hi, Another case of 'my rdkit doesn't work'. I have been trying to get it working for a very long time now (on and off for the last few days). I would really like to use the ETKDG function of this software to generate the 3D conformers of ligands for a virtual screening library. I have tried to

Re: [Rdkit-discuss] Fresh install of RDKit not functioning

2017-10-04 Thread Jordan McCone
show the list of packages it's > going to install and prompt for whether or not you want to proceed. Please > check that the python version listed is 2.7.13-1. > > Many apologies for the problems. This was a mistake by the anaconda team > and it's made a mess. > > Best,

[Rdkit-discuss] Conformer generation using ETKDG

2017-10-04 Thread Jordan McCone
Hi all, I have a .smi file which has a number of smiles strings in it. I would like to generate a single 3D conformer using ETKDG for every smiles string in the list, and then get the output as a single .mol2 file. I am very new to rdkit and even python, and as much as i'd to do this myself, I ne