Re: [Rdkit-discuss] Installation woes: Ubuntu 16.04, Boost 1.61, and RDKit not living so peacefully together after all ...

2017-06-22 Thread JP
Just to give this closure on the list -- the problem was that I had static libraries for boost (.a files). Once I rebuilt boost as shared libraries (.so) everything worked fine. Thanks to Greg and Paolo for their help. On 21 June 2017 at 11:02, Greg Landrum wrote: >

Re: [Rdkit-discuss] Installation woes: Ubuntu 16.04, Boost 1.61, and RDKit not living so peacefully together after all ...

2017-06-21 Thread Greg Landrum
Let's move this off the list for a bit until we get it resolved. Can you please do: "VERBOSE=1 make testReaction" and send the output just to me? Thanks, -greg On Wed, Jun 21, 2017 at 10:24 AM, JP wrote: > Looks like it is finding the correct version of boost

Re: [Rdkit-discuss] Installation woes: Ubuntu 16.04, Boost 1.61, and RDKit not living so peacefully together after all ...

2017-06-21 Thread JP
Looks like it is finding the correct version of boost (and it is finding boost serialize). /opt/rdkit/rdkit-Release_2017_03_2/build$ cmake -D RDK_BUILD_INCHI_SUPPORT=ON -D BOOST_ROOT=/opt/boost_1_61_0/ -D Boost_NO_SYSTEM_PATHS=ON .. -- Could NOT find InChI in system locations (missing:

Re: [Rdkit-discuss] Installation woes: Ubuntu 16.04, Boost 1.61, and RDKit not living so peacefully together after all ...

2017-06-20 Thread Greg Landrum
did you build boost serialize? On Mon, Jun 19, 2017 at 12:03 PM, JP wrote: > Hi Greg ! > > Unfortunately that didn't help (I delete everything in my build directory, > then): > > cmake -DRDK_BUILD_INCHI_SUPPORT=ON -DBOOST_ROOT=/opt/boost_1_61_0/ >

Re: [Rdkit-discuss] Installation woes: Ubuntu 16.04, Boost 1.61, and RDKit not living so peacefully together after all ...

2017-06-19 Thread JP
Hi Greg ! Unfortunately that didn't help (I delete everything in my build directory, then): cmake -DRDK_BUILD_INCHI_SUPPORT=ON -DBOOST_ROOT=/opt/boost_1_61_0/ -DBoost_NO_SYSTEM_PATHS=ON .. and make as usual. [ 62%] Linking CXX executable testReaction

Re: [Rdkit-discuss] Installation woes: Ubuntu 16.04, Boost 1.61, and RDKit not living so peacefully together after all ...

2017-06-19 Thread Greg Landrum
If you have a system boost install that you do not want to use, you should be sure to add "-D Boost_NO_SYSTEM_PATHS=ON" to the cmake arguments. This will (well, should) disable any usage of the system boost. -greg On Mon, Jun 19, 2017 at 9:39 AM, JP wrote: > HI

Re: [Rdkit-discuss] Installation woes: Ubuntu 16.04, Boost 1.61, and RDKit not living so peacefully together after all ...

2017-06-19 Thread JP
HI Paul, Funny you should mention that. I have boost 1.61 (installed manually in /opt) and system boost I installed via sudo apt-get install /opt/rdkit/rdkit-Release_2017_03_2/build$ dpkg -s libboost-dev | grep 'Version' Version: 1.58.0.1ubuntu1 However I pass the BOOST path to cmake via:

Re: [Rdkit-discuss] Installation woes: Ubuntu 16.04, Boost 1.61, and RDKit not living so peacefully together after all ...

2017-06-16 Thread Paul Emsley
On 16/06/2017 12:08, JP wrote: Hi Folks, Must have been eons ago last time I posted to this mailing list. The italians have a saying "chi non muore si rivede". I am trying to install the RDKit (release 2017_03_2) from source, without conda, and I thought this will be a breeze. But I am