Re: [Rdkit-discuss] Jupyter Could not find environment: my-rdkit-env
Il 29/06/2017 16:02, Greg Landrum ha scritto: > Hi, > > This (or something like it) happens to me all the time: you need to > install Jupyter in the new environment too. > > The only reason what you are currently doing even halfway works is > because you have Jupyter installed in the default conda environment > and that is being used when you launch the notebook from the shell > Thank you very much, it worked! I attach the complete commands list, so that it could help any other users Install Anaconda then following [1] run $ conda create -c rdkit -n my-rdkit-env rdkit $ source activate my-rdkit-env (missing line) $ conda install jupyter then $ jupyter-notebook --ip foo_ip --port 8890 then from jupyter notebook from rdkit import Chem from rdkit.Chem import AllChem from rdkit.Chem import Descriptors [1]: http://www.rdkit.org/docs/Install.html -- Check out the vibrant tech community on one of the world's most engaging tech sites, Slashdot.org! http://sdm.link/slashdot___ Rdkit-discuss mailing list Rdkit-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
Re: [Rdkit-discuss] Jupyter Could not find environment: my-rdkit-env
Hi Germano, You can also install rdkit in the default environment: conda install -c rdkit rdkit Best, Michal On 29 June 2017 at 14:22, Germano Massullo wrote: > Hi there, I am experiencing some troubles in letting jupyter use rdkit > on Fedora 25 > I installed Anaconda 4.4.0 > then following [1] I runned > > $ conda create -c rdkit -n my-rdkit-env rdkit > $ source activate my-rdkit-env > > then > > $ jupyter-notebook --ip foo_ip --port 8890 > > then from jupyter notebook > > from rdkit import Chem > from rdkit.Chem import AllChem > from rdkit.Chem import Descriptors > > but those imports return > > CondaEnvironmentNotFoundError: Could not find environment: my-rdkit-env . > You can list all discoverable environments with ``. > > > running > conda info --envs > I get > # conda environments: > # > my-rdkit-env * /home/user/.conda/envs/my-rdkit-env > root /opt/anaconda3 > > > Thank you very much > > [1]: http://www.rdkit.org/docs/Install.html > > > > > > -- > Check out the vibrant tech community on one of the world's most > engaging tech sites, Slashdot.org! http://sdm.link/slashdot > ___ > Rdkit-discuss mailing list > Rdkit-discuss@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/rdkit-discuss > -- Check out the vibrant tech community on one of the world's most engaging tech sites, Slashdot.org! http://sdm.link/slashdot___ Rdkit-discuss mailing list Rdkit-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
Re: [Rdkit-discuss] Jupyter Could not find environment: my-rdkit-env
Hi, This (or something like it) happens to me all the time: you need to install Jupyter in the new environment too. The only reason what you are currently doing even halfway works is because you have Jupyter installed in the default conda environment and that is being used when you launch the notebook from the shell From: Germano Massullo Sent: Thursday, June 29, 2017 3:22:04 PM To: rdkit-discuss@lists.sourceforge.net Subject: [Rdkit-discuss] Jupyter Could not find environment: my-rdkit-env Hi there, I am experiencing some troubles in letting jupyter use rdkit on Fedora 25 I installed Anaconda 4.4.0 then following [1] I runned $ conda create -c rdkit -n my-rdkit-env rdkit $ source activate my-rdkit-env then $ jupyter-notebook --ip foo_ip --port 8890 then from jupyter notebook from rdkit import Chem from rdkit.Chem import AllChem from rdkit.Chem import Descriptors but those imports return CondaEnvironmentNotFoundError: Could not find environment: my-rdkit-env . You can list all discoverable environments with ``. running conda info --envs I get # conda environments: # my-rdkit-env * /home/user/.conda/envs/my-rdkit-env root /opt/anaconda3 Thank you very much [1]: http://www.rdkit.org/docs/Install.html -- Check out the vibrant tech community on one of the world's most engaging tech sites, Slashdot.org! http://sdm.link/slashdot ___ Rdkit-discuss mailing list Rdkit-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rdkit-discuss -- Check out the vibrant tech community on one of the world's most engaging tech sites, Slashdot.org! http://sdm.link/slashdot___ Rdkit-discuss mailing list Rdkit-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rdkit-discuss