Re: [Rdkit-discuss] Trouble with conda build in Docker
Hi Riccardo, just to tell you: my problem went away (I didn't touched it since my last email) for whatever reason (did you do something?) Markus On Thu, Apr 6, 2017 at 12:51 PM, Markus Sitzmann wrote: > Thanks Riccardo for your reply > > I tried both master and development - both with your Dockerscript (which > starts from centos) and mine (which starts from Debian:jessie). Same result > everywhere. I haven't built it in a while, too, but since I updated to > Docker CE, Version 17.03, it triggered this rebuild. > > I hope it isn't my setup (well, that is actually what I wanted to find out > :-), if somebody else has problems). It isn't urgent, also :-) > > > Markus > > On Thu, Apr 6, 2017 at 8:50 AM, Riccardo Vianello < > riccardo.viane...@gmail.com> wrote: > >> Hi Markus, >> >> On Thu, Apr 6, 2017 at 12:03 AM, Markus Sitzmann < >> markus.sitzm...@gmail.com> wrote: >> >>> Hi (Riccardo). >>> >>> I have trouble with the conda build in Docker (I just updated to the >>> most recent version which triggered the new build) - below is the error >>> trace. I took the original Docker file and just edited out all non-Python35 >>> builds - so it does only the Python35 builds and ends somewhere when >>> rdkit-postgres95 is built. Does somebody have the same problem? >>> >> >> I couldn't work on this during the last few months so I didn't test any >> recent builds. I might be able to have a closer look and run some tests >> next week. What branch of the conda-rdkit repository are you using (master >> or development)? >> >> Best, >> Riccardo >> >> >>> >>> make[3]: Entering directory `/home/rdkit/bld/postgresql95_ >>> 1491429385957/work/postgresql-9.5.2/src/port' >>> make -C ../backend submake-errcodes >>> make[3]: Entering directory `/home/rdkit/bld/postgresql95_ >>> 1491429385957/work/postgresql-9.5.2/src/backend/catalog' >>> cd ../../../src/include/catalog && /bin/sh ../../../config/missing perl >>> ./duplicate_oids >>> make -C utils probes.h >>> *** >>> ERROR: Perl is missing on your system. It is needed unless you are >>> building >>> from an unmodified official distribution of PostgreSQL. >>> *** >>> make[3]: Leaving directory `/home/rdkit/bld/postgresql95_ >>> 1491429385957/work/postgresql-9.5.2/src/backend/catalog' >>> >>> > -- Check out the vibrant tech community on one of the world's most engaging tech sites, Slashdot.org! http://sdm.link/slashdot___ Rdkit-discuss mailing list Rdkit-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
Re: [Rdkit-discuss] Trouble with conda build in Docker
Thanks Riccardo for your reply I tried both master and development - both with your Dockerscript (which starts from centos) and mine (which starts from Debian:jessie). Same result everywhere. I haven't built it in a while, too, but since I updated to Docker CE, Version 17.03, it triggered this rebuild. I hope it isn't my setup (well, that is actually what I wanted to find out :-), if somebody else has problems). It isn't urgent, also :-) Markus On Thu, Apr 6, 2017 at 8:50 AM, Riccardo Vianello < riccardo.viane...@gmail.com> wrote: > Hi Markus, > > On Thu, Apr 6, 2017 at 12:03 AM, Markus Sitzmann < > markus.sitzm...@gmail.com> wrote: > >> Hi (Riccardo). >> >> I have trouble with the conda build in Docker (I just updated to the most >> recent version which triggered the new build) - below is the error trace. I >> took the original Docker file and just edited out all non-Python35 builds - >> so it does only the Python35 builds and ends somewhere when >> rdkit-postgres95 is built. Does somebody have the same problem? >> > > I couldn't work on this during the last few months so I didn't test any > recent builds. I might be able to have a closer look and run some tests > next week. What branch of the conda-rdkit repository are you using (master > or development)? > > Best, > Riccardo > > >> >> make[3]: Entering directory `/home/rdkit/bld/postgresql95_ >> 1491429385957/work/postgresql-9.5.2/src/port' >> make -C ../backend submake-errcodes >> make[3]: Entering directory `/home/rdkit/bld/postgresql95_ >> 1491429385957/work/postgresql-9.5.2/src/backend/catalog' >> cd ../../../src/include/catalog && /bin/sh ../../../config/missing perl >> ./duplicate_oids >> make -C utils probes.h >> *** >> ERROR: Perl is missing on your system. It is needed unless you are >> building >> from an unmodified official distribution of PostgreSQL. >> *** >> make[3]: Leaving directory `/home/rdkit/bld/postgresql95_ >> 1491429385957/work/postgresql-9.5.2/src/backend/catalog' >> >> -- Check out the vibrant tech community on one of the world's most engaging tech sites, Slashdot.org! http://sdm.link/slashdot___ Rdkit-discuss mailing list Rdkit-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
Re: [Rdkit-discuss] Trouble with conda build in Docker
Hi Markus, On Thu, Apr 6, 2017 at 12:03 AM, Markus Sitzmann wrote: > Hi (Riccardo). > > I have trouble with the conda build in Docker (I just updated to the most > recent version which triggered the new build) - below is the error trace. I > took the original Docker file and just edited out all non-Python35 builds - > so it does only the Python35 builds and ends somewhere when > rdkit-postgres95 is built. Does somebody have the same problem? > I couldn't work on this during the last few months so I didn't test any recent builds. I might be able to have a closer look and run some tests next week. What branch of the conda-rdkit repository are you using (master or development)? Best, Riccardo > > make[3]: Entering directory `/home/rdkit/bld/postgresql95_ > 1491429385957/work/postgresql-9.5.2/src/port' > make -C ../backend submake-errcodes > make[3]: Entering directory `/home/rdkit/bld/postgresql95_ > 1491429385957/work/postgresql-9.5.2/src/backend/catalog' > cd ../../../src/include/catalog && /bin/sh ../../../config/missing perl > ./duplicate_oids > make -C utils probes.h > *** > ERROR: Perl is missing on your system. It is needed unless you are building > from an unmodified official distribution of PostgreSQL. > *** > make[3]: Leaving directory `/home/rdkit/bld/postgresql95_ > 1491429385957/work/postgresql-9.5.2/src/backend/catalog' > > -- Check out the vibrant tech community on one of the world's most engaging tech sites, Slashdot.org! http://sdm.link/slashdot___ Rdkit-discuss mailing list Rdkit-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
