Author: tlinnet
Date: Wed May 7 18:16:22 2014
New Revision: 23064
URL: http://svn.gna.org/viewcvs/relax?rev=23064view=rev
Log:
Fix for model B14 mking ugly graphs.
The power of ncyc has to be an integer.
bug #22018 (https://gna.org/bugs/index.php?22018): Model B14 creates ugly
graphs ! Sig
Author: tlinnet
Date: Wed May 7 21:26:04 2014
New Revision: 23068
URL: http://svn.gna.org/viewcvs/relax?rev=23068view=rev
Log:
Changed script for synthetic CPMG data.
This is to test the fitting of CR72 and B14, when creating R2eff data with
numerical model:
MODEL_NS_CPMG_2SITE_EXPANDED
Author: tlinnet
Date: Wed May 7 22:01:03 2014
New Revision: 23069
URL: http://svn.gna.org/viewcvs/relax?rev=23069view=rev
Log:
Fixed systemtest Relax_disp.test_cpmg_synthetic_cr72 and
Relax_disp.test_cpmg_synthetic_cr72_full_noise_cluster.
This was after change of the synthetic script
Author: tlinnet
Date: Wed May 7 23:35:57 2014
New Revision: 23070
URL: http://svn.gna.org/viewcvs/relax?rev=23070view=rev
Log:
Small improvement for generic CPMG data script file.
sr #3154: (https://gna.org/support/?3154) Implementation of Baldwin (2014) B14
model - 2-site exact solution model
Author: tlinnet
Date: Wed May 7 23:35:59 2014
New Revision: 23071
URL: http://svn.gna.org/viewcvs/relax?rev=23071view=rev
Log:
Small typo fix in generic CPMG script.
Modified:
trunk/test_suite/system_tests/scripts/relax_disp/cpmg_synthetic.py
Modified: trunk/test_suite/system_tests/scripts
Author: tlinnet
Date: Wed May 7 23:44:40 2014
New Revision: 23072
URL: http://svn.gna.org/viewcvs/relax?rev=23072view=rev
Log:
Fix for tabular space and forgotten \n when writing dx.maps config files.
bug #22023:(https://gna.org/bugs/?22023) relax dx.map produce .net files which
makes error
Author: tlinnet
Date: Thu May 8 01:55:07 2014
New Revision: 23073
URL: http://svn.gna.org/viewcvs/relax?rev=23073view=rev
Log:
Added functionality of the visualising the spin dynamics point which generated
the data.
This is to the script, which can visualize the synthetic CPMG data.
sr #3154
Author: tlinnet
Date: Thu May 8 02:44:18 2014
New Revision: 23075
URL: http://svn.gna.org/viewcvs/relax?rev=23075view=rev
Log:
Fix for the file name writing of the point file.
bug #22023:(https://gna.org/bugs/?22023) relax dx.map produce .net files which
makes error.
Modified:
trunk/lib
Author: tlinnet
Date: Thu May 8 02:44:16 2014
New Revision: 23074
URL: http://svn.gna.org/viewcvs/relax?rev=23074view=rev
Log:
Fix for script for the visualising the spin dynamics point which generated the
data.
This is to the script, which can visualize the synthetic CPMG data.
sr #3154
Author: tlinnet
Date: Thu May 8 12:43:56 2014
New Revision: 23076
URL: http://svn.gna.org/viewcvs/relax?rev=23076view=rev
Log:
Made systemtest Relax_disp.test_cpmg_synthetic_dx_map_points to start testing.
Modified also sample CPMG script to allow for this.
task #7791: (https://gna.org/task
Author: tlinnet
Date: Thu May 8 14:40:20 2014
New Revision: 23081
URL: http://svn.gna.org/viewcvs/relax?rev=23081view=rev
Log:
Added list_of_lists to uf_objects.
task #7791: (https://gna.org/task/index.php?7791 ) the dx.map should accept a
list of list with values for points.
Modified
Author: tlinnet
Date: Thu May 8 14:40:17 2014
New Revision: 23079
URL: http://svn.gna.org/viewcvs/relax?rev=23079view=rev
Log:
Added is_list_val_or_list_of_list_val to lib/arg_check.py.
This function is not yet done.
task #7791: (https://gna.org/task/index.php?7791 ) the dx.map should accept
Author: tlinnet
Date: Thu May 8 14:40:23 2014
New Revision: 23082
URL: http://svn.gna.org/viewcvs/relax?rev=23082view=rev
Log:
Made multiple writing of point files.
task #7791: (https://gna.org/task/index.php?7791 ) the dx.map should accept a
list of list with values for points.
Modified
Author: tlinnet
Date: Thu May 8 14:40:15 2014
New Revision: 23078
URL: http://svn.gna.org/viewcvs/relax?rev=23078view=rev
Log:
Modified user function dx.map to accept list og lists with values.
task #7791: (https://gna.org/task/index.php?7791 ) the dx.map should accept a
list of list
Author: tlinnet
Date: Thu May 8 14:40:19 2014
New Revision: 23080
URL: http://svn.gna.org/viewcvs/relax?rev=23080view=rev
Log:
Added list_of_lists to user_functions/objects.py.
task #7791: (https://gna.org/task/index.php?7791 ) the dx.map should accept a
list of list with values for points
Author: tlinnet
Date: Thu May 8 14:54:04 2014
New Revision: 23084
URL: http://svn.gna.org/viewcvs/relax?rev=23084view=rev
Log:
Added B14 to the the dispersion auto-analysis.
The B14 models will not create output files until this is done.
sr #3154: (https://gna.org/support/?3154) Implementation
Author: tlinnet
Date: Thu May 8 14:54:02 2014
New Revision: 23083
URL: http://svn.gna.org/viewcvs/relax?rev=23083view=rev
Log:
Added B14 to the dispersion software comparison table in the manual
(docs/latex/dispersion_software.tex).
sr #3154: (https://gna.org/support/?3154) Implementation
Author: tlinnet
Date: Thu May 8 15:01:04 2014
New Revision: 23085
URL: http://svn.gna.org/viewcvs/relax?rev=23085view=rev
Log:
Completely removed the list_of_lists argument.
task #7791: (https://gna.org/task/index.php?7791 ) the dx.map should accept a
list of list with values for points
Author: tlinnet
Date: Thu May 8 15:04:09 2014
New Revision: 23086
URL: http://svn.gna.org/viewcvs/relax?rev=23086view=rev
Log:
Modified the description of making x,y,z points in the chi2 space for the
userfunction dx.map.
task #7791: (https://gna.org/task/index.php?7791 ) the dx.map should
Author: tlinnet
Date: Thu May 8 15:59:36 2014
New Revision: 23087
URL: http://svn.gna.org/viewcvs/relax?rev=23087view=rev
Log:
Tried to make writing of the map.general file.
task #7791: (https://gna.org/task/index.php?7791 ) the dx.map should accept a
list of list with values for points
Author: tlinnet
Date: Thu May 8 18:35:51 2014
New Revision: 23091
URL: http://svn.gna.org/viewcvs/relax?rev=23091view=rev
Log:
Made solutions for math domain error.
Prevented to take log of negative values, and division by zero.
This though slows the implementation down.
Systemtest
Author: tlinnet
Date: Thu May 8 18:39:52 2014
New Revision: 23092
URL: http://svn.gna.org/viewcvs/relax?rev=23092view=rev
Log:
Reverted r23087 as this was a bad implementation.
The command used was:
svn merge -r23087:r23086 .
.
Tried to make writing of the map.general file.
task
Author: tlinnet
Date: Thu May 8 19:42:05 2014
New Revision: 23098
URL: http://svn.gna.org/viewcvs/relax?rev=23098view=rev
Log:
Added systemtest for the production of dx map.
Relax_disp.test_cpmg_synthetic_dx_map_points.
task #7791: (https://gna.org/task/index.php?7791 ) the dx.map should
Author: tlinnet
Date: Thu May 8 19:42:03 2014
New Revision: 23097
URL: http://svn.gna.org/viewcvs/relax?rev=23097view=rev
Log:
Modified dx.map to accept more than one point.
task #7791: (https://gna.org/task/index.php?7791 ) the dx.map should accept a
list of list with values for points
Author: tlinnet
Date: Thu May 8 19:41:59 2014
New Revision: 23096
URL: http://svn.gna.org/viewcvs/relax?rev=23096view=rev
Log:
Added FIXME in lib/arg_check.py.
task #7791: (https://gna.org/task/index.php?7791 ) the dx.map should accept a
list of list with values for points.
Modified
Author: tlinnet
Date: Thu May 8 20:04:32 2014
New Revision: 23102
URL: http://svn.gna.org/viewcvs/relax?rev=23102view=rev
Log:
Documentation fix for IT99. Changed kex to tex.
Still needs to be changed at homepage:
http://www.nmr-relax.com/analyses/relaxation_dispersion.html#IT99
bug #22019
Author: tlinnet
Date: Thu May 8 20:16:53 2014
New Revision: 23106
URL: http://svn.gna.org/viewcvs/relax?rev=23106view=rev
Log:
Small extra explanation in auto analysis.
bug #21799(https://gna.org/bugs/?21799): Insufficient recommendations/Warning
message for the execution of dauvergne protocol
Author: tlinnet
Date: Fri May 9 17:33:08 2014
New Revision: 23133
URL: http://svn.gna.org/viewcvs/relax?rev=23133view=rev
Log:
Made the parsing of the min,max and median chi2 value to be used to define the
chi2 hypersurfaces when writing the dx .net program.
task #7792: (https://gna.org/task
Author: tlinnet
Date: Fri May 9 17:33:05 2014
New Revision: 23132
URL: http://svn.gna.org/viewcvs/relax?rev=23132view=rev
Log:
Made collecting of min, max and median value of chi2, when creating the chi2
map.
task #7792: (https://gna.org/task/?7792) Make the dx.map write suggest chi
surface
Author: tlinnet
Date: Fri May 9 18:57:35 2014
New Revision: 23138
URL: http://svn.gna.org/viewcvs/relax?rev=23138view=rev
Log:
Added the chi_surface=None to the backend function.
When None, it will try to find reasonale chi2 values.
These will define surface levels for the Innermost, Inner
Author: tlinnet
Date: Fri May 9 18:57:38 2014
New Revision: 23140
URL: http://svn.gna.org/viewcvs/relax?rev=23140view=rev
Log:
Added mathematics functions to lib/mathematics.py to calculate percentile.
This is because percentile is only available in numpy 1.9.
task #7792: (https://gna.org/task
Author: tlinnet
Date: Fri May 9 18:57:33 2014
New Revision: 23137
URL: http://svn.gna.org/viewcvs/relax?rev=23137view=rev
Log:
Added the keyword chi_surface to the front-end dx.map function.
To set the chi2 surface level for the Innermost, Inner, Middle and Outer
Isosurface.
task #7792
Author: tlinnet
Date: Fri May 9 18:57:32 2014
New Revision: 23136
URL: http://svn.gna.org/viewcvs/relax?rev=23136view=rev
Log:
Removed the keywords for remap in backend function, since this was not used.
task #7792: (https://gna.org/task/?7792) Make the dx.map write suggest chi
surface values
Author: tlinnet
Date: Fri May 9 18:57:37 2014
New Revision: 23139
URL: http://svn.gna.org/viewcvs/relax?rev=23139view=rev
Log:
Now saves all chi2 values, to better find reasonable chi level for the
Innermost, Inner, Middle and Outer Isosurface.
task #7792: (https://gna.org/task/?7792) Make
Author: tlinnet
Date: Fri May 9 18:57:40 2014
New Revision: 23141
URL: http://svn.gna.org/viewcvs/relax?rev=23141view=rev
Log:
Made the standard values of chi2 surface be 10, 20, 50 and 90 percentile of all
chi2 values.
task #7792: (https://gna.org/task/?7792) Make the dx.map write suggest chi
Author: tlinnet
Date: Sat May 10 10:06:49 2014
New Revision: 23146
URL: http://svn.gna.org/viewcvs/relax?rev=23146view=rev
Log:
Changed the percentage which is different in percentile from numpy_future.
task #7792: (https://gna.org/task/?7792) Make the dx.map write suggest chi
surface values
Author: tlinnet
Date: Sat May 10 10:06:46 2014
New Revision: 23145
URL: http://svn.gna.org/viewcvs/relax?rev=23145view=rev
Log:
Changed the import of percentile from lib.mathematics to lib.numpy_future.
task #7792: (https://gna.org/task/?7792) Make the dx.map write suggest chi
surface values
Author: tlinnet
Date: Sat May 10 10:06:50 2014
New Revision: 23147
URL: http://svn.gna.org/viewcvs/relax?rev=23147view=rev
Log:
Added lib/numpy_future.py.
This module is for implementing numpy function code from higher versions of
numpy.
The relax dependencies listed at the download page
Author: tlinnet
Date: Sat May 10 10:06:52 2014
New Revision: 23148
URL: http://svn.gna.org/viewcvs/relax?rev=23148view=rev
Log:
Added numpy_future to the __init__.py file in lib directory.
task #7792: (https://gna.org/task/?7792) Make the dx.map write suggest chi
surface values.
Modified
Author: tlinnet
Date: Sat May 10 18:57:16 2014
New Revision: 23149
URL: http://svn.gna.org/viewcvs/relax?rev=23149view=rev
Log:
Moved numpy_future from lib to extern.
Extern is special package for external software or code that is bundled with
relax.
task #7792: (https://gna.org/task/?7792
Author: tlinnet
Date: Sat May 10 19:02:39 2014
New Revision: 23150
URL: http://svn.gna.org/viewcvs/relax?rev=23150view=rev
Log:
Created branch for the testing of speeding up dispersion analysis.
This can be a disruptive process, and needs its own branch.
This branch can then be tested for speed
Author: tlinnet
Date: Sun May 11 19:52:45 2014
New Revision: 23151
URL: http://svn.gna.org/viewcvs/relax?rev=23151view=rev
Log:
Updated synthetic CPMG data script.
This is to analyse complex dispersion data.
Related to problem:
bug #22021:(https://gna.org/bugs/?22021) Model B14 shows bad
Author: tlinnet
Date: Sun May 18 20:16:05 2014
New Revision: 23212
URL: http://svn.gna.org/viewcvs/relax?rev=23212view=rev
Log:
Initialized merge tracking via svnmerge with revisions 1-23149 from
svn+ssh://tlin...@svn.gna.org/svn/relax/trunk
Modified:
branches/disp_speed/ (props changed
Author: tlinnet
Date: Sun May 18 21:24:01 2014
New Revision: 23213
URL: http://svn.gna.org/viewcvs/relax?rev=23213view=rev
Log:
Branch disp_speed deleted, since svnmerge.py give a strange error:
svnmerge: no integration info available.
Removed:
branches/disp_speed
Author: tlinnet
Date: Sun May 18 22:11:48 2014
New Revision: 23215
URL: http://svn.gna.org/viewcvs/relax?rev=23215view=rev
Log:
Initialized merge tracking via svnmerge with revisions 1-23213 from
svn+ssh://tlin...@svn.gna.org/svn/relax/trunk
Modified:
branches/disp_speed/ (props changed
Author: tlinnet
Date: Sun May 18 23:36:14 2014
New Revision: 23216
URL: http://svn.gna.org/viewcvs/relax?rev=23216view=rev
Log:
Huge speed-up for model CR72.
task #7793: (https://gna.org/task/?7793) Speed-up of dispersion models.
Systemtest Relax_disp.test_cpmg_synthetic_cr72_full_noise_cluster
Author: tlinnet
Date: Sun May 18 23:36:17 2014
New Revision: 23217
URL: http://svn.gna.org/viewcvs/relax?rev=23217view=rev
Log:
Fix for systemtest test_cpmg_synthetic_dx_map_points.
task #7793: (https://gna.org/task/?7793) Speed-up of dispersion models.
This is after commit 23216
Author: tlinnet
Date: Mon May 19 00:51:20 2014
New Revision: 23220
URL: http://svn.gna.org/viewcvs/relax?rev=23220view=rev
Log:
Huge speed-up of model B14.
task #7793: (https://gna.org/task/?7793) Speed-up of dispersion models.
Time test for systemtests:
test_baldwin_synthetic
2.626s - 1.990s
Author: tlinnet
Date: Mon May 19 01:19:02 2014
New Revision: 23221
URL: http://svn.gna.org/viewcvs/relax?rev=23221view=rev
Log:
Speed-up of model TP02.
task #7793: (https://gna.org/task/?7793) Speed-up of dispersion models.
The change for running systemtest is:
test_curve_type_r1rho_fixed_time
Author: tlinnet
Date: Mon May 19 03:20:49 2014
New Revision: 23225
URL: http://svn.gna.org/viewcvs/relax?rev=23225view=rev
Log:
Speed-up for model M61.
task #7793: (https://gna.org/task/?7793) Speed-up of dispersion models.
Change in speed is:
test_m61_data_to_m61
6.692s - 3.480s
Modified
Author: tlinnet
Date: Mon May 19 03:20:54 2014
New Revision: 23228
URL: http://svn.gna.org/viewcvs/relax?rev=23228view=rev
Log:
Added missing imports of numpy.array.
task #7793: (https://gna.org/task/?7793) Speed-up of dispersion models.
Modified:
branches/disp_speed/lib/dispersion/lm63.py
Author: tlinnet
Date: Mon May 19 03:20:46 2014
New Revision: 23223
URL: http://svn.gna.org/viewcvs/relax?rev=23223view=rev
Log:
Speed-up of model MP05.
task #7793: (https://gna.org/task/?7793) Speed-up of dispersion models.
The change in systemtest is:
test_tp02_data_to_mp05
10.750s - 6.644s
Author: tlinnet
Date: Mon May 19 03:20:53 2014
New Revision: 23227
URL: http://svn.gna.org/viewcvs/relax?rev=23227view=rev
Log:
Speed-up of model IT99.
task #7793: (https://gna.org/task/?7793) Speed-up of dispersion models.
Change in speed is:
test_hansen_cpmg_data_auto_analysis
9.74s - 8.330s
Author: tlinnet
Date: Mon May 19 03:20:43 2014
New Revision: 23222
URL: http://svn.gna.org/viewcvs/relax?rev=23222view=rev
Log:
Huge speed-up for model TAP03.
task #7793: (https://gna.org/task/?7793) Speed-up of dispersion models.
The change for running systemtest is:
test_tp02_data_to_tap03
Author: tlinnet
Date: Mon May 19 03:20:51 2014
New Revision: 23226
URL: http://svn.gna.org/viewcvs/relax?rev=23226view=rev
Log:
Speed-up of model LM63.
task #7793: (https://gna.org/task/?7793) Speed-up of dispersion models.
Change in systemtest was:
test_hansen_cpmg_data_auto_analysis
13.731s
Author: tlinnet
Date: Mon May 19 03:20:47 2014
New Revision: 23224
URL: http://svn.gna.org/viewcvs/relax?rev=23224view=rev
Log:
Speed-up of model MMQ CR72.
task #7793: (https://gna.org/task/?7793) Speed-up of dispersion models.
Change in systemtest:
test_sprangers_data_to_mmq_cr72
9.892s
Author: tlinnet
Date: Mon May 19 03:20:56 2014
New Revision: 23229
URL: http://svn.gna.org/viewcvs/relax?rev=23229view=rev
Log:
Speed-up of model DPL94.
task #7793: (https://gna.org/task/?7793) Speed-up of dispersion models.
Change in speed is:
test_dpl94_data_to_dpl94
19.412s - 4.427s
Author: tlinnet
Date: Mon May 19 14:44:10 2014
New Revision: 23239
URL: http://svn.gna.org/viewcvs/relax?rev=23239view=rev
Log:
Math-domain catching for model B14.
task #7793: (https://gna.org/task/?7793) Speed-up of dispersion models.
This is to implement catching of math domain errors, before
Author: tlinnet
Date: Tue May 20 01:47:30 2014
New Revision: 23246
URL: http://svn.gna.org/viewcvs/relax?rev=23246view=rev
Log:
Math-domain catching for model: 'NS CPMG 2-site expanded'.
task #7793: (https://gna.org/task/?7793) Speed-up of dispersion models.
This is to implement catching
Author: tlinnet
Date: Tue May 20 01:47:37 2014
New Revision: 23249
URL: http://svn.gna.org/viewcvs/relax?rev=23249view=rev
Log:
An attempt to fix the pipe_control/minimisy.py minimise() call to
processor.run_queue().
It was thought that I was modifying the address of array class(back_calc
Author: tlinnet
Date: Tue May 20 01:47:32 2014
New Revision: 23247
URL: http://svn.gna.org/viewcvs/relax?rev=23247view=rev
Log:
Math-domain catching for model CR72.
task #7793: (https://gna.org/task/?7793) Speed-up of dispersion models.
This is to implement catching of math domain errors
Author: tlinnet
Date: Tue May 20 01:47:34 2014
New Revision: 23248
URL: http://svn.gna.org/viewcvs/relax?rev=23248view=rev
Log:
Turned of processor.run_queue() when using calc().
task #7793: (https://gna.org/task/?7793) Speed-up of dispersion models.
A weird behaviour was found when running
Author: tlinnet
Date: Tue May 20 02:02:19 2014
New Revision: 23250
URL: http://svn.gna.org/viewcvs/relax?rev=23250view=rev
Log:
Fix for variable num_points not set.
Modified:
branches/disp_speed/target_functions/relax_disp.py
Modified: branches/disp_speed/target_functions/relax_disp.py
URL
Author: tlinnet
Date: Tue May 20 14:55:11 2014
New Revision: 23259
URL: http://svn.gna.org/viewcvs/relax?rev=23259view=rev
Log:
Reverted r23250-23248 as the correct fix was done in fixing bug 22055.
bug #22055 (https://gna.org/bugs/?22055) The processor.run_queue() does not
clean up
Author: tlinnet
Date: Tue May 20 17:40:12 2014
New Revision: 23261
URL: http://svn.gna.org/viewcvs/relax?rev=23261view=rev
Log:
Merged revisions 23254,23260 via svnmerge from
svn+ssh://tlin...@svn.gna.org/svn/relax/trunk
r23254 | bugman | 2014-05-20 13:37:32 +0200 (Tue, 20 May 2014
Author: tlinnet
Date: Tue May 20 22:29:40 2014
New Revision: 23270
URL: http://svn.gna.org/viewcvs/relax?rev=23270view=rev
Log:
Math-domain catching for model TP02.
task #7793: (https://gna.org/task/?7793) Speed-up of dispersion models.
This is to implement catching of math domain errors
Author: tlinnet
Date: Tue May 20 22:29:35 2014
New Revision: 23268
URL: http://svn.gna.org/viewcvs/relax?rev=23268view=rev
Log:
Fix for commit 23246.
http://svn.gna.org/viewcvs/relax?view=revisionrevision=23246
The testing taking a value to a power was performed wrong.
This made systemtest
Author: tlinnet
Date: Tue May 20 22:29:38 2014
New Revision: 23269
URL: http://svn.gna.org/viewcvs/relax?rev=23269view=rev
Log:
Math-domain catching for model TSMFK01.
task #7793: (https://gna.org/task/?7793) Speed-up of dispersion models.
This is to implement catching of math domain errors
Author: tlinnet
Date: Tue May 20 22:29:41 2014
New Revision: 23271
URL: http://svn.gna.org/viewcvs/relax?rev=23271view=rev
Log:
Math-domain catching for model TAP03.
task #7793: (https://gna.org/task/?7793) Speed-up of dispersion models.
This is to implement catching of math domain errors
Author: tlinnet
Date: Tue May 20 22:29:52 2014
New Revision: 23277
URL: http://svn.gna.org/viewcvs/relax?rev=23277view=rev
Log:
Math-domain catching for model M61.
task #7793: (https://gna.org/task/?7793) Speed-up of dispersion models.
This is to implement catching of math domain errors, before
Author: tlinnet
Date: Tue May 20 22:29:49 2014
New Revision: 23275
URL: http://svn.gna.org/viewcvs/relax?rev=23275view=rev
Log:
Math-domain catching for model IT99.
task #7793: (https://gna.org/task/?7793) Speed-up of dispersion models.
This is to implement catching of math domain errors
Author: tlinnet
Date: Tue May 20 22:29:43 2014
New Revision: 23272
URL: http://svn.gna.org/viewcvs/relax?rev=23272view=rev
Log:
Math-domain catching for model DPL94.
task #7793: (https://gna.org/task/?7793) Speed-up of dispersion models.
This is to implement catching of math domain errors
Author: tlinnet
Date: Tue May 20 22:29:45 2014
New Revision: 23273
URL: http://svn.gna.org/viewcvs/relax?rev=23273view=rev
Log:
Math-domain catching for model TAP03.
Another check for division with 0 inserted.
Modified:
branches/disp_speed/lib/dispersion/tap03.py
Modified: branches
Author: tlinnet
Date: Tue May 20 22:29:47 2014
New Revision: 23274
URL: http://svn.gna.org/viewcvs/relax?rev=23274view=rev
Log:
Math-domain catching for model MP05.
task #7793: (https://gna.org/task/?7793) Speed-up of dispersion models.
This is to implement catching of math domain errors
Author: tlinnet
Date: Tue May 20 22:29:50 2014
New Revision: 23276
URL: http://svn.gna.org/viewcvs/relax?rev=23276view=rev
Log:
Removed class object back_calc being updated per time point for model LM63.
task #7793: (https://gna.org/task/?7793) Speed-up of dispersion models.
To make the code
Author: tlinnet
Date: Tue May 20 22:29:54 2014
New Revision: 23278
URL: http://svn.gna.org/viewcvs/relax?rev=23278view=rev
Log:
Math-domain catching for model MMQ CR72.
task #7793: (https://gna.org/task/?7793) Speed-up of dispersion models.
This is to implement catching of math domain errors
Author: tlinnet
Date: Tue May 20 22:42:12 2014
New Revision: 23279
URL: http://svn.gna.org/viewcvs/relax?rev=23279view=rev
Log:
Merged revisions 23262-23264,23267 via svnmerge from
svn+ssh://tlin...@svn.gna.org/svn/relax/trunk
r23262 | bugman | 2014-05-20 17:50:10 +0200 (Tue, 20 May
Author: tlinnet
Date: Wed May 21 13:02:58 2014
New Revision: 23297
URL: http://svn.gna.org/viewcvs/relax?rev=23297view=rev
Log:
Align math-domain catching for model IT99 with trunk implementation.
task #7793: (https://gna.org/task/?7793) Speed-up of dispersion models.
This is to implement
Author: tlinnet
Date: Wed May 21 13:02:55 2014
New Revision: 23295
URL: http://svn.gna.org/viewcvs/relax?rev=23295view=rev
Log:
Align math-domain catching for model CR72 with trunk implementation.
task #7793: (https://gna.org/task/?7793) Speed-up of dispersion models.
This is to implement
Author: tlinnet
Date: Wed May 21 13:03:02 2014
New Revision: 23300
URL: http://svn.gna.org/viewcvs/relax?rev=23300view=rev
Log:
Align math-domain catching for model MP05 with trunk implementation.
task #7793: (https://gna.org/task/?7793) Speed-up of dispersion models.
This is to implement
Author: tlinnet
Date: Wed May 21 13:03:04 2014
New Revision: 23301
URL: http://svn.gna.org/viewcvs/relax?rev=23301view=rev
Log:
Align math-domain catching for model TAP03 with trunk implementation.
task #7793: (https://gna.org/task/?7793) Speed-up of dispersion models.
This is to implement
Author: tlinnet
Date: Wed May 21 13:03:09 2014
New Revision: 23304
URL: http://svn.gna.org/viewcvs/relax?rev=23304view=rev
Log:
Removing unnecessary math-domain catching for model IT99.
task #7793: (https://gna.org/task/?7793) Speed-up of dispersion models..
The denominator is always positive
Author: tlinnet
Date: Wed May 21 13:03:06 2014
New Revision: 23302
URL: http://svn.gna.org/viewcvs/relax?rev=23302view=rev
Log:
Align math-domain catching for model TP02 with trunk implementation.
task #7793: (https://gna.org/task/?7793) Speed-up of dispersion models.
This is to implement
Author: tlinnet
Date: Wed May 21 13:23:10 2014
New Revision: 23305
URL: http://svn.gna.org/viewcvs/relax?rev=23305view=rev
Log:
Merged revisions 23289-23290 via svnmerge from
svn+ssh://tlin...@svn.gna.org/svn/relax/trunk
r23289 | bugman | 2014-05-21 10:41:57 +0200 (Wed, 21 May 2014
Author: tlinnet
Date: Wed May 21 17:43:49 2014
New Revision: 23311
URL: http://svn.gna.org/viewcvs/relax?rev=23311view=rev
Log:
Modified cpmg_synthetic script to first create all time structures before doing
back-calculation.
bug #22017: (https://gna.org/bugs/index.php?22017) LinAlgError
Author: tlinnet
Date: Wed May 21 17:43:47 2014
New Revision: 23310
URL: http://svn.gna.org/viewcvs/relax?rev=23310view=rev
Log:
Modified system test Relax_disp.test_cpmg_synthetic_ns3d_to_cr72 to catch bug.
bug #22017: (https://gna.org/bugs/index.php?22017) LinAlgError, for all
numerical CPMG
Author: tlinnet
Date: Wed May 21 18:00:19 2014
New Revision: 23312
URL: http://svn.gna.org/viewcvs/relax?rev=23312view=rev
Log:
Renamed systemtest to test_cpmg_synthetic_ns3d_to_cr72_noise_cluster.
The model that creates the data has been changed to numerical model.
bug #22017: (https://gna.org
Author: tlinnet
Date: Wed May 21 18:11:52 2014
New Revision: 23313
URL: http://svn.gna.org/viewcvs/relax?rev=23313view=rev
Log:
Merged revisions 23310-23312 via svnmerge from
svn+ssh://tlin...@svn.gna.org/svn/relax/trunk
r23310 | tlinnet | 2014-05-21 17:43:47 +0200 (Wed, 21 May 2014
Author: tlinnet
Date: Wed May 21 20:36:37 2014
New Revision: 23317
URL: http://svn.gna.org/viewcvs/relax?rev=23317view=rev
Log:
Parameter precision increase for systemtest Relax_disp.test_baldwin_synthetic.
The correct implementation of the trigometric functions allow for higher
precision.
bug
Author: tlinnet
Date: Wed May 21 20:36:33 2014
New Revision: 23315
URL: http://svn.gna.org/viewcvs/relax?rev=23315view=rev
Log:
Implemented systemtest Relax_disp.test_cpmg_synthetic_ns3d_to_b14.
bug #22021: (https://gna.org/bugs/?22021) Model B14 shows bad fitting to data.
This is to catch
Author: tlinnet
Date: Wed May 21 20:36:41 2014
New Revision: 23319
URL: http://svn.gna.org/viewcvs/relax?rev=23319view=rev
Log:
Code clean-up in systemtest Relax_disp.test_baldwin_synthetic.
bug #22021: (https://gna.org/bugs/?22021) Model B14 shows bad fitting to data.
Removing many unnecessary
Author: tlinnet
Date: Wed May 21 20:36:39 2014
New Revision: 23318
URL: http://svn.gna.org/viewcvs/relax?rev=23318view=rev
Log:
Code cleanup in systemtest Relax_disp.test_baldwin_synthetic_full.
bug #22021: (https://gna.org/bugs/?22021) Model B14 shows bad fitting to data.
The precision could
Author: tlinnet
Date: Wed May 21 20:36:36 2014
New Revision: 23316
URL: http://svn.gna.org/viewcvs/relax?rev=23316view=rev
Log:
Extremely important fix to the model B14.
This was discovered by author Andrew Baldwin of the inspection of his code in
relax.
bug #22021: (https://gna.org/bugs
Author: tlinnet
Date: Thu May 22 10:42:17 2014
New Revision: 23323
URL: http://svn.gna.org/viewcvs/relax?rev=23323view=rev
Log:
Branch created from trunk to compare to the disp_speed branch.
The branch will be used to write a range of system tests that should
fail in the trunk, and now pass
Author: tlinnet
Date: Thu May 22 10:49:08 2014
New Revision: 23324
URL: http://svn.gna.org/viewcvs/relax?rev=23324view=rev
Log:
Initialized merge tracking via svnmerge with revisions 1-23322 from
svn+ssh://tlin...@svn.gna.org/svn/relax/trunk
Modified:
branches/disp_speed_compare/ (props
Author: tlinnet
Date: Thu May 22 14:50:55 2014
New Revision: 23330
URL: http://svn.gna.org/viewcvs/relax?rev=23330view=rev
Log:
Merged revisions 23327-23329 via svnmerge from
svn+ssh://tlin...@svn.gna.org/svn/relax/trunk
r23327 | bugman | 2014-05-22 14:05:01 +0200 (Thu, 22 May 2014
Author: tlinnet
Date: Thu May 22 14:59:45 2014
New Revision: 23332
URL: http://svn.gna.org/viewcvs/relax?rev=23332view=rev
Log:
Merged revisions 23331 via svnmerge from
svn+ssh://tlin...@svn.gna.org/svn/relax/trunk
r23331 | bugman | 2014-05-22 14:52:08 +0200 (Thu, 22 May 2014) | 10
Author: tlinnet
Date: Thu May 22 15:19:30 2014
New Revision: 2
URL: http://svn.gna.org/viewcvs/relax?rev=2view=rev
Log:
Align math-domain catching for model NS CPMG 2-site expanded with trunk
implementation.
task #7793: (https://gna.org/task/?7793) Speed-up of dispersion models
Author: tlinnet
Date: Thu May 22 15:19:32 2014
New Revision: 23334
URL: http://svn.gna.org/viewcvs/relax?rev=23334view=rev
Log:
Modified unit tests demonstrating edge case 'no Rex' failures of the model 'NS
CPMG 2-site expanded'.
This is to align with the current return of data
Author: tlinnet
Date: Thu May 22 16:56:32 2014
New Revision: 23338
URL: http://svn.gna.org/viewcvs/relax?rev=23338view=rev
Log:
Added 7 unit tests demonstrating edge case 'no Rex' failures of the model
'DPL94'.
This follows from the ideas in the post
http://article.gmane.org
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