Source: r-bioc-genomicalignments Version: 1.4.1-1 Severity: serious Justification: fails to build from source User: reproducible-builds@lists.alioth.debian.org Usertags: ftbfs X-Debbugs-Cc: reproducible-builds@lists.alioth.debian.org
Dear Maintainer, r-bioc-genomicalignments fails to build from source in unstable/amd64: [..] cigar_utils.c: In function 'drop_or_append_or_merge_range': cigar_utils.c:179:33: error: request for member 'elts' in something not a structure or union prev_end_plus_1 = range_buf->a.elts[buf_nelt_minus_1] + ^ cigar_utils.c:180:19: error: request for member 'elts' in something not a structure or union range_buf->b.elts[buf_nelt_minus_1]; ^ cigar_utils.c:183:16: error: request for member 'elts' in something not a structure or union range_buf->b.elts[buf_nelt_minus_1] += width; ^ cigar_utils.c:185:21: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] OP_buf_prev_elt = OP_buf->elts + ^ cigar_utils.c:196:18: error: incompatible types when assigning to type 'CharAE {aka struct char_ae}' from type 'CharAE * {aka struct char_ae *}' OP_buf_new_elt = new_CharAE(1); ^ cigar_utils.c: In function 'explode_cigar_ops': cigar_utils.c:361:8: error: incompatible types when assigning to type 'CharAE {aka struct char_ae}' from type 'CharAE * {aka struct char_ae *}' OPbuf = new_CharAE(0); ^ cigar_utils.c: In function 'explode_cigar_op_lengths': cigar_utils.c:403:9: error: incompatible types when assigning to type 'IntAE {aka struct int_ae}' from type 'IntAE * {aka struct int_ae *}' OPLbuf = new_IntAE(0, 0, 0); ^ cigar_utils.c: In function 'cigar_ranges': cigar_utils.c:607:14: error: incompatible types when assigning to type 'IntPairAE {aka struct intpair_ae}' from type 'IntPairAE * {aka struct intpair_ae *}' range_buf1 = new_IntPairAE(ans_len, 0); ^ cigar_utils.c:614:14: error: incompatible types when assigning to type 'IntPairAEAE {aka struct intpair_aeae}' from type 'IntPairAEAE * {aka struct intpair_aeae *}' range_buf2 = new_IntPairAEAE(ans_len, ans_len); ^ cigar_utils.c:621:10: error: incompatible types when assigning to type 'CharAEAE {aka struct char_aeae}' from type 'CharAEAE * {aka struct char_aeae *}' OP_buf = new_CharAEAE(cigar_len, 0); ^ cigar_utils.c:660:16: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] range_buf_p = range_buf2.elts + *f_elt - 1; ^ /usr/lib/R/etc/Makeconf:134: recipe for target 'cigar_utils.o' failed make[1]: *** [cigar_utils.o] Error 1 make[1]: Leaving directory '/build/r-bioc-genomicalignments-1.4.1/src' make[1]: Entering directory '/build/r-bioc-genomicalignments-1.4.1/src' make[1]: Leaving directory '/build/r-bioc-genomicalignments-1.4.1/src' ERROR: compilation failed for package 'GenomicAlignments' * removing '/build/r-bioc-genomicalignments-1.4.1/debian/r-bioc-genomicalignments/usr/lib/R/site-library/GenomicAlignments' /usr/share/R/debian/r-cran.mk:98: recipe for target 'R_any_arch' failed make: *** [R_any_arch] Error 1 dpkg-buildpackage: error: fakeroot debian/rules binary gave error exit status 2 [..] The full build log is attached or (an alternate build) can be viewed here: https://reproducible.debian.net/logs/unstable/amd64/r-bioc-genomicalignments_1.4.1-1.build1.log.gz Regards, -- ,''`. : :' : Chris Lamb `. `'` la...@debian.org / chris-lamb.co.uk `-
r-bioc-genomicalignments.1.4.1-1.unstable.amd64.log.txt.gz
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