Re: Refinement of spiral magnetic structure from neutron powder diffraction

2009-07-23 Thread Alexander Barcza
Dear Ross,

Thanks for your reply. Sorry for being so exclusive in my initail mail, of
course I should have included everyone! The title of PhD student also
applies to me.

I've seen a talk about SARAh by Andrew Wills at ISIS and was impressed by
it. Therefore I've already downloaded it but didn't succeed in using it yet.

The problem is actually already at the beginning:
In my GSAS file I created a second phase with P1 and just copied the atoms
of the main phase over.

I loaded that file by clicking GSAS Controls, Load GSAS EXP file

How do I then define the MAT file?

Sorry, it must be obvious but I can't find it. I am happy to read some
documentation but couldn't find any on the website (
http://www.chem.ucl.ac.uk/people/wills/index.html).

Thanks again for your help
Alex



2009/7/23 Ross H Colman ucca...@ucl.ac.uk

 Dear Alex,

 You addressed your email to experts on magnetic refinement so I
 apologise if I am the only person to reply for I am a lowly PhD student.

 I am afraid I am not going to answer your questions directly but instead
 point you to the program that I use for magnetic refinements. Its free
 software available on CCP14 called SARAh. It allows you to input your
 magnetic atom sites, space group and k-vector then has the ability to
 modify your fullprof pcr file depending on how you wish to do the
 refinement.

 The process is a little involved, as it uses representational theory to
 reduce your problem to symmetry allowed structures, rather than freely
 refining all variables, but it has step by step instructions and I think
 there are even some online help videos for using it now.

 Available from:
 www.CCP14.ac.uk  or
 www.chem.ucl.ac.uk/people/wills/index.html

 Best regards and good luck
 Ross Colman


  Dear experts on magnetic refinement,
 
  We recently got some nice data on GEM, ISIS and I was able to get a
 decent
  structural fit using GSAS and FullProf.
 
  Now I would like to refine the magnetic structure but this is my first
  time
  so I struggle to give FullProf what it wants.
 
  Since I'm a novice treating the magnetic data I'd have some general
  questions about the input (which I attached below). The general structure
  of
  the pcr file seems to be OK, because it is read by FP but unfortunately
 in
  the current form leads to a singular matrix. I'm sure I've done something
  wrong with the input parameters.
 
  Here is a quick outline of what I want to achieve:
  There are two magnetic ions in the structure. Mn and Co, but Co has a
 very
  small moment (we know that from neutron diffraction from the 80's). The
  moments seem to order in two incommensurate spiral structures (one for Mn
  and one for Co) with the k-vector along c-axis. I thought it is best to
  include a separate purely magnetic phase in FP. Would you agree and if
 yes
  can I still do a multi-bank refinenment?
 
  Here is the snippet from the pcr file which was inspired by Ho2Cu2O5, an
  example from the FP webpage (questions below):
 
 --
  CoMnSi(magnetic
  reflection)
 
  !
  !Nat Dis Mom Jbt  Isy Str FurthATZ Nvk More
 2   0   0 -1-1  0   0  0.   2   1
  !Jvi Jdi Hel Sol Mom Ter
   3   0   0   0   0   0
  !Contributions (0/1) of this phase to the  6 patterns (FOR simplicity I
  deleted all but the first pattern to get started)
   1
  !Irf Npr Jtyp  Nsp_Ref Ph_Shift for Pattern#  1
-1  13   -1  0  0
  ! Pr1Pr2Pr3   Brind.   Rmua   Rmub   Rmuc for Pattern#  1
0.000  0.000  1.000  1.000  0.000  0.000  0.000
  P -1  --Space group symbol
  !Nsym Cen Laue MagMat
 4   1 31
  !
  SYMM  x,y,z
  MSYM  u,v,w,0.0
  SYMM -x,-y,z+1/2
  MSYM  u, v,-w,0.0
  SYMM  x+1/2,-y+1/2,z
  MSYM -u,v,-w,0.0
  SYMM -x+1/2,y+1/2,z+1/2
  MSYM  u,-v,-w,0.0
  !
  !Atom   Typ   Mag VekXYZ Biso   Occ  Rm
  Rphi  Rtheta
  !   Im   Iphi   Ithetabeta11   beta22   beta33   MagPh
  Co1 MCO2 1   1   0.15609  0.25000  0.05324  0.0   1.0
  0.323.0
  45.0
 
  220.00 0.00   230.00   280.00  0.00   0.0
  0.0   0.0
0.0  0.0  0.0  0.0  0.0   0.0
   0.00 0.00 0.00 0.00 0.00  0.00
  Mn1 MMN2 1   2   0.02093  0.25000  0.68070  0.0   1.0
  3.1 178.0
  13.0
 
   0.00 0.00 0.00 0.00  0.00
  0.0  0.0  0.0
0.0  0.0  0.0  0.0  0.0   0.0
   0.00 0.00 0.00 0.00 0.00  0.00
  !--- Profile Parameters for Pattern #  1
  !  Scale   Extinc  Bov Str1 Str2 Str3Strain-Model
4.8798   0.   0.   0.   0.   0.   0
  1.0 0.00 0.00 0.00 0.00 0.00
  ! Sig-2

Re: Refinement of spiral magnetic structure from neutron powder diffraction

2009-07-23 Thread Alexander Barcza
 of the magnetic structure can be very simple, 
 a set of moments in P1, so setting understanding
 what it all means is quite unambiguous.

 FullProf has a k vector and is far more flexible in the ways in which
 magnetic structures can be defined. This flexibility can make it hard to set
 up a magnetic phase. SARAh -Refine tries to deal with most of these problems
 for you (see the video help for the entire process), but it is sometimes
 less obvious to see what is happening in the pcr file.

 If you have any questions, feel free to get in contact. Good luck!

 Andrew

 ps/ to see the SARAh documentation- install SARAh (which contains
 SARAh-Representational Analysis and SARAh-Refine) on a windows computer
 (including macs with parallels or vmfusion), and look in the help menu


 On 23 Jul 2009, at 12:27, Alexander Barcza wrote:

 Dear Ross,

 Thanks for your reply. Sorry for being so exclusive in my initail mail, of
 course I should have included everyone! The title of PhD student also
 applies to me.

 I've seen a talk about SARAh by Andrew Wills at ISIS and was impressed by
 it. Therefore I've already downloaded it but didn't succeed in using it yet.

 The problem is actually already at the beginning:
 In my GSAS file I created a second phase with P1 and just copied the atoms
 of the main phase over.

 I loaded that file by clicking GSAS Controls, Load GSAS EXP file

 How do I then define the MAT file?

 Sorry, it must be obvious but I can't find it. I am happy to read some
 documentation but couldn't find any on the website (
 http://www.chem.ucl.ac.uk/people/wills/index.html).

 Thanks again for your help
 Alex



 2009/7/23 Ross H Colman ucca...@ucl.ac.uk

 Dear Alex,

 You addressed your email to experts on magnetic refinement so I
 apologise if I am the only person to reply for I am a lowly PhD student.

 I am afraid I am not going to answer your questions directly but instead
 point you to the program that I use for magnetic refinements. Its free
 software available on CCP14 called SARAh. It allows you to input your
 magnetic atom sites, space group and k-vector then has the ability to
 modify your fullprof pcr file depending on how you wish to do the
 refinement.

 The process is a little involved, as it uses representational theory to
 reduce your problem to symmetry allowed structures, rather than freely
 refining all variables, but it has step by step instructions and I think
 there are even some online help videos for using it now.

 Available from:
 www.CCP14.ac.uk  or
 www.chem.ucl.ac.uk/people/wills/index.html

 Best regards and good luck
 Ross Colman


  Dear experts on magnetic refinement,
 
  We recently got some nice data on GEM, ISIS and I was able to get a
 decent
  structural fit using GSAS and FullProf.
 
  Now I would like to refine the magnetic structure but this is my first
  time
  so I struggle to give FullProf what it wants.
 
  Since I'm a novice treating the magnetic data I'd have some general
  questions about the input (which I attached below). The general
 structure
  of
  the pcr file seems to be OK, because it is read by FP but unfortunately
 in
  the current form leads to a singular matrix. I'm sure I've done
 something
  wrong with the input parameters.
 
  Here is a quick outline of what I want to achieve:
  There are two magnetic ions in the structure. Mn and Co, but Co has a
 very
  small moment (we know that from neutron diffraction from the 80's). The
  moments seem to order in two incommensurate spiral structures (one for
 Mn
  and one for Co) with the k-vector along c-axis. I thought it is best to
  include a separate purely magnetic phase in FP. Would you agree and if
 yes
  can I still do a multi-bank refinenment?
 
  Here is the snippet from the pcr file which was inspired by Ho2Cu2O5, an
  example from the FP webpage (questions below):
 
 --
  CoMnSi(magnetic
  reflection)
 
  !
  !Nat Dis Mom Jbt  Isy Str FurthATZ Nvk More
 2   0   0 -1-1  0   0  0.   2   1
  !Jvi Jdi Hel Sol Mom Ter
   3   0   0   0   0   0
  !Contributions (0/1) of this phase to the  6 patterns (FOR simplicity I
  deleted all but the first pattern to get started)
   1
  !Irf Npr Jtyp  Nsp_Ref Ph_Shift for Pattern#  1
-1  13   -1  0  0
  ! Pr1Pr2Pr3   Brind.   Rmua   Rmub   Rmuc for Pattern#  1
0.000  0.000  1.000  1.000  0.000  0.000  0.000
  P -1  --Space group symbol
  !Nsym Cen Laue MagMat
 4   1 31
  !
  SYMM  x,y,z
  MSYM  u,v,w,0.0
  SYMM -x,-y,z+1/2
  MSYM  u, v,-w,0.0
  SYMM  x+1/2,-y+1/2,z
  MSYM -u,v,-w,0.0
  SYMM -x+1/2,y+1/2,z+1/2
  MSYM  u,-v,-w,0.0
  !
  !Atom   Typ   Mag VekXYZ Biso   Occ  Rm
  Rphi  Rtheta
  !   Im   Iphi   Ithetabeta11   beta22   beta33   MagPh
  Co1 MCO2 1   1