Hi
I am new of rpy2, i tried to install it, but i constantly get errors.
I get something like this:
D:\local\Software\python\rpy2-2.1.7\rpy2-2.1.7>python setup.py build
running build
running build_py
running build_ext
C:\R\R-2.12.0
C:\R\R-2.12.0\bin\R
<_sre.SRE_Match object at 0x02429DA0>
Traceb
On Fri, 5 Nov 2010 12:08:23 +
Peter wrote:
> On Fri, Nov 5, 2010 at 11:03 AM, Paul wrote:
> >
> > i tried all the combinations for {python2.6.5 , python2.6.6}
> > {R2.10.1, R2.11.1, R2.12.0} {rpy2.15, rpy2.17, rpy_cvs2.1.x,
> > rpycvs2.2.x}
> >
> > m
On Fri, 5 Nov 2010 14:40:18 +
Peter wrote:
> Hi Paul,
>
> On Fri, Nov 5, 2010 at 1:55 PM, Paul wrote:
> >
> > about the installer, i could not possibly find it.
> > I just found (and tried) the 2.0.8 from
> > http://bitbucket.org/lgautier/rpy2/downloads
27;asm' or
'__attribute__' before '{' token
src/rpymodule2062.c:1665: error: expected '=', ',', ';', 'asm' or
'__attribute__' before '{' token
src/rpymodule2062.c:1685: error: expected '=', ',', '
quot;/usr/lib64/R" is RHOME.
-Paul.
On 4/11/08, Laurent Gautier <[EMAIL PROTECTED]> wrote:
> One line in the log tells:
> src/RPy.h:56:20: error: Python.h: No such file or directory
>
> wouldn't you have the development headers missing ?
>
>
>
> 2008/4/11, P
. Also, I think the issue concerns data.frames since I don't get
any problems when I use lsfit (which does the regression using vectors
instead of a data frame). Any experience with such issues or
suggestions as to where to look for a solution would be much
appreciated.
Thanks,
Paul
RHOME= /us
ognized: File format not recognized
collect2: ld returned 1 exit status
error: command 'gcc' failed with exit status 1
Any ideas here? I need this bad! Thanks!
--
Paul Geeleher
Department of Mathematics
National University of Ireland
Galway
Ireland
-
Hey Laurent, sorry for the delay, I was away. The output is:
/usr/lib64/libpython2.5.so Symbolic link to 'libpython2.5.so.1.0'
-Paul.
On Thu, Jul 10, 2008 at 6:30 PM, laurent oget <[EMAIL PROTECTED]> wrote:
>
>
>>
>> gcc -pthread -shared build/temp.linux-x86_6
27; is:
"libpython2.5.so: symbolic link to `libpython2.5.so.1.0'"
So its a link and the output of 'file libpython2.5.so.1.0' is:
"libpython2.5.so.1.0: ELF 64-bit LSB shared object, AMD x86-64, version 1
(SYSV), stripped&
So its a link and the output of 'file libpython2.5.so.1.0' is:
"libpython2.5.so.1.0: ELF 64-bit LSB shared object, AMD x86-64, version 1
(SYSV), stripped"
Any ideas here guys? (please!)
-Paul.
-
This SF
Thanks for the response Laurent. I'll give it a go and let you know how it
works out.
-Paul.
On Fri, Nov 14, 2008 at 7:18 PM, laurent oget <[EMAIL PROTECTED]> wrote:
> This definitely looks weird. I have built rpy and rpy2 on 64-bit
> linux, but this was always using a pyth
;)
>>> from rpy import *
Any ideas here would be greatly appreciated.
Thanks,
-Paul.
On 11/14/08, Paul Geeleher <[EMAIL PROTECTED]> wrote:
>
> Thanks for the response Laurent. I'll give it a go and let you know how it
> works out.
>
> -Paul.
&
ning build_ext
running install_lib
running install_egg_info
Removing /usr/local/lib/python2.5/site-packages/rpy-1.0.3-py2.5.egg-info
Writing /usr/local/lib/python2.5/site-packages/rpy-1.0.3-py2.5.egg-info
-Paul
On Sun, Nov 16, 2008 at 5:30 PM, laurent oget <[EMAIL PROTECTED]> wrote:
>
Hi,
I'm importing into version 2.5.2. Thats the version that I compiled from
source and that now starts by default when I type "python" at the command
prompt.
-Paul.
On Mon, Nov 17, 2008 at 3:53 AM, laurent oget <[EMAIL PROTECTED]> wrote:
> One question i forgot to ask:
h has
done the trick.
If you are interested to know, I am using Rpy as part of a bioinformatics
application that I am developing as part of an MSc. There is a link here:
http://www3.it.nuigalway.ie/agolden/bioconductor/
Thanks for all the help with this and for developing such a great
h has
done the trick.
If you are interested to know, I am using Rpy as part of a bioinformatics
application that I am developing as part of an MSc. There is a link here:
http://www3.it.nuigalway.ie/agolden/bioconductor/
Thanks for all the help with this and for developing such a great
testing to
ensure the migration is error-free. thanks,
Paul
execute: python setup.py install
RHOMES= []
DEBUG= True
Setting RHOMES to ['/usr/local/lib64/R']
### Using R verion 2.8.0 installed at /usr/local/lib64/R ###
RHOME= /usr/local/lib64/R
copying src/rpymodule.c -> src/rpym
thanks -- I had trouble searching the listserv archives for this workaround
-- if this is related to R 2.8.0, perhaps the rpy maintainers could post
this workaround to the installation documentation -- seems like it'd be
useful for a lot of people still using the 1.0 version.
paul
On Tue, D
Hey guys
should i use rpy or rpy2
i m learning r language and rpy simultaneously
thanks a lot for pointers
--
Check out the new SourceForge.net Marketplace.
It is the best place to buy or sell services for
just about anyth
http://www.bitbucket.org/lgautier/rpy2/
Where can i hg pull rpy2 ?
the above site is down
On 1/7/09, paul jobs wrote:
>
> Hey guys
> should i use rpy or rpy2
> i m learning r language and rpy simultaneously
>
> thanks
so i do
hg clone http://bitbucket.org/lgautier/rpy2/
On 1/8/09, Laurent Gautier wrote:
>
> paul jobs wrote:
>
>> http://www.bitbucket.org/lgautier/rpy2/
>> Where can i hg pull rpy2 ?
>> the above site is down
>>
>
> Seems to be up at the moment.
>
ked up by
the next script, so as to save the time it takes to repeatedly write
my session to and read it from the hard disk?
--
Paul Geeleher
School of Mathematics, Statistics and Applied Mathematics
National University
Hi guys, I'm getting this error below when I try to load the bioconductor
affy library through rpy. It loads find in R though. Its a 64 bit opensuse
system. Any ideas would be greatly appreciated! Paul.
>>> from rpy import r
>>> r('library("affy")')
Lo
Hi,
I installed Rpy following the instructions in the README file. Thing is I
want to remove this version and use the version in the Ubuntu repository
instead. How do I completely remove the original version? I'm sure its very
simple I can't find this information anywhere.
Thanks
Paul
mands here:
http://rpy.sourceforge.net/rpy2/doc-2.1/html/introduction.html
indicates that everything is working as well as i need it too.
Thanks very much for all work put into this!
-paul
--
Live Security Virtual Confer
Add the path to the R executable to your system path.
See here for instructions:
http://www.computerhope.com/issues/ch000549.htm#0
On Thu, Oct 18, 2012 at 7:57 AM, Shane Carey wrote:
> Hi,
>
> I have downloaded Rpy2, but when I go to install it, I get the following
> error,
> Error Tried to gues
y of users who are familiar with
> python and R both. (they need not to learn other class like Formula and so
> on.
>
>
I don't have any experience with this, but I remember seeing this section
of documentation. You might find it useful:
http://pandas.pydata.org/pandas-docs/st
On Sun, May 12, 2013 at 8:30 AM, Terry Tan wrote:
> I am just frustrated when I try to install rpy2 on my computer. I
> download rpy2-2.3.6.win32-py2.7.exe and use it to install. but when i test
> the tests.py , it give me that error:
>
> Traceback (most recent call last):
> File "C:\Users\tanh
t;
R_HOME is that path to the R installation directory (e.g., C:\Program
Files\R\R-2.12.1)
R_USER is your user name/login on the machine.
-paul
--
How ServiceNow helps IT people transform IT departments:
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On Mon, Jun 3, 2013 at 3:14 PM, David Chalenski wrote:
> I am running into similar but slightly different problems. I am able to
> change path, and have edited the r_interface\__init__.py file to output
> what Rlib and os.path are. It guesses the correct location of R.dll, but
> still throws an
You might need to set R_HOME and R_USER system environment variables. I
haven't messed with rpy2 in a while, but last time I did, setting R_HOME tp
"C:\Program Files\R\R-2.12.1" and R_USER to my login name worked.
Give that a shot and let me know.
On Thu, Dec 12, 2013 at 11:34 AM, Marvin Ward, J
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