Hello. I work with high resolution projections (32 mp) and reconstuction
takes some longstanding time. At the same time there are two video cards in
my computer, but uses only one. I wonder if i can use two video cards to
reduce reconstruction time.
What i tried to do in short:
- execute this script on newest rtk revisiion
for ($i in $(grep -nrl "cuCtxSetCurrent" utilities/ITKCudaCommon/*))
echo "!$i"
p="_"
grep -vE "(cuCtxSetCurrent)" $i > $i$p
mv $i$p $i
done
i.e. remove all lines where happens setting of video card context
- in rtkfdk.cxx by using posix threads create two threads, where i set
contexts through cuCtxSetCurrent(0) and cuCtxSetCurrentset(1)
correspondingly and wait for signals;
- in main thread for each working thread it created separated graphs, with
reader, ddf, pssf, constant (which is splitted by two, i.e. dimension[1]
/= 2; origin+= ), fdk.
- then fdk pointers put to shared data, so working threads can use them.
After all signal is emmited and fdk->update() is called at working threads
- since job is done, i copy two resulted subvolumes to one and save.
it works and reconstuction time is reduced for about 1.5 times! However, if
i run it a lot of times, finally it crashes with
img->GetRequestedRegion() = [ img->GetRequestedRegion() = [
ImageRegionImageRegion ( (0x7f45f02293600x7f45f0229360)
)
Dimension: Dimension: 0x30x3
Index:
Index: [[00, , 0x14d0x14d, , 0xcf0xcf]]
Size:
Size: [[0x3e8, 0x14f, 0x3e8, 0x1]0x14f,
]
img->GetLargestPossibleRegion() = [ 0x1ImageRegion (]0x7f45f0229328)
Dimension: ]
img->GetLargestPossibleRegion() = [ ImageRegion (0x30x7f45f0229328
)
Index: [0, 0, 0]
Size: [0x3e8, 0x29a, 0x1bc]
]
Dimension: 0x3
Index: [0, 0, 0]
Size: [0x3e8, 0x29a, 0x1bc]
]
ExceptionObject caught with arg->fdk->Update() in file rtkfdk.cxx line
ExceptionObject caught with arg->fdk->Update() in file 242
rtkfdk.cxx line 242
itk::InvalidRequestedRegionError (itk::InvalidRequestedRegionError
(0x7f45d048a100)
0x7f45d85a9ee0)
Location: "unknown"
Location: "unknown"
File:
/home/koza/thirdparty/InsightToolkit-4.8.0/Modules/Core/Common/src/itkDataObject.cxx
Line: File:
/home/koza/thirdparty/InsightToolkit-4.8.0/Modules/Core/Common/src/itkDataObject.cxx
Line: 393
Description: Requested region is (at least partially) outside the largest
possible region.
393
Description: Requested region is (at least partially) outside the largest
possible region.
It seems that itk classes are not reenterable, Is there way to fix it ? Or
is there another way to make several video cards using for reconstuction in
parallel ?
Thanks.
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