Re: [sage-devel] linbox 64-bit charpoly

2016-09-26 Thread Jonathan Bober
On Tue, Sep 27, 2016 at 4:18 AM, William Stein wrote: > On Mon, Sep 26, 2016 at 6:55 PM, Jonathan Bober wrote: > > On Mon, Sep 26, 2016 at 11:52 PM, William Stein > wrote: > >> > >> On Mon, Sep 26, 2016 at 3:27 PM, Jonathan Bober

Re: [sage-devel] linbox 64-bit charpoly

2016-09-26 Thread William Stein
On Mon, Sep 26, 2016 at 6:55 PM, Jonathan Bober wrote: > On Mon, Sep 26, 2016 at 11:52 PM, William Stein wrote: >> >> On Mon, Sep 26, 2016 at 3:27 PM, Jonathan Bober wrote: >> > In the matrix_integer_dense charpoly() function, there is a

Re: [sage-devel] linbox 64-bit charpoly

2016-09-26 Thread Jonathan Bober
On Mon, Sep 26, 2016 at 11:52 PM, William Stein wrote: > On Mon, Sep 26, 2016 at 3:27 PM, Jonathan Bober wrote: > > In the matrix_integer_dense charpoly() function, there is a note in the > > docstring which says "Linbox charpoly disabled on 64-bit machines,

Re: [sage-devel] linbox 64-bit charpoly

2016-09-26 Thread William Stein
On Mon, Sep 26, 2016 at 3:27 PM, Jonathan Bober wrote: > In the matrix_integer_dense charpoly() function, there is a note in the > docstring which says "Linbox charpoly disabled on 64-bit machines, since it > hangs in many cases." > > As far as I can tell, that is not true, in

[sage-devel] linbox 64-bit charpoly

2016-09-26 Thread Jonathan Bober
In the matrix_integer_dense charpoly() function, there is a note in the docstring which says "Linbox charpoly disabled on 64-bit machines, since it hangs in many cases." As far as I can tell, that is not true, in the sense that (1) I have 64-bit machines, and Linbox charpoly is not disabled, (2)

Re: [sage-devel] Re: [sagemath-admins] trac not responding

2016-09-26 Thread William Stein
> On Mon, Sep 26, 2016 at 6:22 AM, Volker Braun wrote: >> Yes, both the file server files.sagemath.org and buildbot build.sagemath.org >> are down... I've done what I can and right now - files.sagemath.org - rsync.sagemath.org seem to respond to pings. And -

Re: [sage-devel] Re: openblas segfault?

2016-09-26 Thread Jonathan Bober
On Mon, Sep 26, 2016 at 10:10 PM, Jean-Pierre Flori wrote: > I suspect that perhaps the copy I have the works is working because I >> built it as sage 7.3 at some point with SAGE_ATLAS_LIB set and then rebuilt >> it on the develop branch, which didn't get rid of the atlas

Re: [sage-devel] Re: openblas segfault?

2016-09-26 Thread Jean-Pierre Flori
On Monday, September 26, 2016 at 9:06:17 PM UTC+2, Michael Orlitzky wrote: > > On 09/26/2016 03:03 PM, 'Martin R' via sage-devel wrote: > > > > Is there a quick fix? > > > > To get something usable, try > > ./configure --with-blas=atlas > > before running "make". I had a similar problem:

Re: [sage-devel] Re: [sagemath-admins] trac not responding

2016-09-26 Thread William Stein
On Mon, Sep 26, 2016 at 7:24 AM, William Stein wrote: > On Mon, Sep 26, 2016 at 6:22 AM, Volker Braun wrote: >> Yes, both the file server files.sagemath.org and buildbot build.sagemath.org >> are down... >> > > I'll check on these when I'm next on campus

Re: [sage-devel] Re: openblas segfault?

2016-09-26 Thread Jean-Pierre Flori
On Monday, September 26, 2016 at 8:42:26 PM UTC+2, Jonathan Bober wrote: > > I suspect that perhaps the copy I have the works is working because I > built it as sage 7.3 at some point with SAGE_ATLAS_LIB set and then rebuilt > it on the develop branch, which didn't get rid of the atlas

Re: [sage-devel] Re: openblas segfault?

2016-09-26 Thread 'Martin R' via sage-devel
Thanks, now (and for the next few hours :-) trying... Am Montag, 26. September 2016 21:06:17 UTC+2 schrieb Michael Orlitzky: > > On 09/26/2016 03:03 PM, 'Martin R' via sage-devel wrote: > > > > Is there a quick fix? > > > > To get something usable, try > > ./configure --with-blas=atlas >

Re: [sage-devel] Re: openblas segfault?

2016-09-26 Thread Michael Orlitzky
On 09/26/2016 03:03 PM, 'Martin R' via sage-devel wrote: > > Is there a quick fix? > To get something usable, try ./configure --with-blas=atlas before running "make". I had a similar problem: https://trac.sagemath.org/ticket/21561 -- You received this message because you are subscribed

Re: [sage-devel] Re: openblas segfault?

2016-09-26 Thread 'Martin R' via sage-devel
I just tried make after saying "export TARGET=P2". Doing so, openblas starts to build but fails after a while saying ar: sgemm_kernel.o: No such file or directory ../Makefile.tail:40: recipe for target 'libs' failed make[4]: *** [libs] Error 1 make[4]: Leaving directory

Re: [sage-devel] Re: openblas segfault?

2016-09-26 Thread Jonathan Bober
I suspect that perhaps the copy I have the works is working because I built it as sage 7.3 at some point with SAGE_ATLAS_LIB set and then rebuilt it on the develop branch, which didn't get rid of the atlas symlinks that were already setup. So maybe it isn't actually using openBLAS. On Mon, Sep

Re: [sage-devel] Re: openblas segfault?

2016-09-26 Thread Jonathan Bober
I've rebuilt again from scratch, twice. Once after clearing all my possibly questionable environment variables (except for LD_LIBRARY_PATH, since that is needed for gcc-6.1.0, as set by module add gcc-6.1.0 for me). The second time I did "CFLAGS=-mno-xop make". I can see that flag took effect by

[sage-combinat-devel] Fomin's growth diagrams on dual graded graphs

2016-09-26 Thread 'Martin R' via sage-combinat-devel
Hi there! At https://trac.sagemath.org/ticket/21594 I have finally polished my personal growth diagrams code. Comments and patches are very welcome. In particular: * implement backward rules for domino insertion * implement semistandard domino insertion * implement Young-Fibonacci insertion

Re: [sage-devel] Re: openblas segfault?

2016-09-26 Thread 'Martin R' via sage-devel
I forgot: martin@Martin-Laptop:~/sage-develop$ lscpu Architecture: x86_64 CPU op-mode(s):32-bit, 64-bit Byte Order:Little Endian CPU(s):4 On-line CPU(s) list: 0-3 Thread(s) pro Kern:1 Kern(e) pro Socket:4 Socket(s): 1

Re: [sage-devel] Re: openblas segfault?

2016-09-26 Thread 'Martin R' via sage-devel
On my computer, 7.4.beta6 doesn't seem to compile openblas successfully either. After make distclean and make I get an error (log attached). real 135m22.614s user 407m51.656s sys 21m22.276s *** Error building Sage. The following

Re: [sage-devel] Re: [sagemath-admins] trac not responding

2016-09-26 Thread William Stein
On Mon, Sep 26, 2016 at 6:22 AM, Volker Braun wrote: > Yes, both the file server files.sagemath.org and buildbot build.sagemath.org > are down... > I'll check on these when I'm next on campus (probably today). William > > > On Monday, September 26, 2016 at 2:25:52 PM

Re: [sage-devel] Re: openblas segfault?

2016-09-26 Thread Jonathan Bober
On Mon, Sep 26, 2016 at 1:50 PM, leif wrote: > Jean-Pierre Flori wrote: > > > > > > On Monday, September 26, 2016 at 11:47:00 AM UTC+2, Jonathan Bober wrote: > > > > On Mon, Sep 26, 2016 at 9:44 AM, Dima Pasechnik > > wrote: > > > > > > > >

[sage-devel] Re: [sagemath-admins] trac not responding

2016-09-26 Thread Volker Braun
Yes, both the file server files.sagemath.org and buildbot build.sagemath.org are down... On Monday, September 26, 2016 at 2:25:52 PM UTC+2, leif wrote: > > Dima Pasechnik wrote: > > On Mon, Sep 26, 2016 at 7:50 AM, Harald Schilly > > wrote: > >> On Mon, Sep 26, 2016

[sage-devel] Re: openblas segfault?

2016-09-26 Thread leif
Jean-Pierre Flori wrote: > > > On Monday, September 26, 2016 at 11:47:00 AM UTC+2, Jonathan Bober wrote: > > On Mon, Sep 26, 2016 at 9:44 AM, Dima Pasechnik > wrote: > > > > On Monday, September 26, 2016 at 2:22:51 AM UTC, Jonathan Bober > wrote: >

Re: [sage-devel] Re: openblas segfault?

2016-09-26 Thread Jonathan Bober
I now seem to have built a version that doesn't segfault on this, without intentionally changing anything. So I don't know what is going on. I may try another build from scratch, just for the sake of my sanity. On Mon, Sep 26, 2016 at 11:09 AM, Jean-Pierre Flori wrote: > > >

[sage-devel] Re: [sagemath-admins] trac not responding

2016-09-26 Thread leif
Dima Pasechnik wrote: > > > On Monday, September 26, 2016 at 9:04:08 AM UTC, Volker Braun wrote: > > Somebody killed unauthorized git:// over the weekend... incorrect > firewall rule? > > > It was William, I suppose. > Actually, disabling anonymous git:// would perhaps help to reduce

[sage-devel] Re: [sagemath-admins] trac not responding

2016-09-26 Thread leif
Dima Pasechnik wrote: > On Mon, Sep 26, 2016 at 7:50 AM, Harald Schilly > wrote: >> On Mon, Sep 26, 2016 at 3:51 AM, Jonathan Bober wrote: >>> tracgit://trac.sagemath.org/sage.git (fetch) >>> tracg...@trac.sagemath.org:sage.git (push) >> >> As

Re: [sage-devel] Re: [sagemath-admins] trac not responding

2016-09-26 Thread Volker Braun
Didn't we have that problem previously that OS updates would overwrite system config (I'm guessing thats what happened). On Monday, September 26, 2016 at 12:02:36 PM UTC+2, Dima Pasechnik wrote: > > > > On Monday, September 26, 2016 at 9:04:08 AM UTC, Volker Braun wrote: >> >> Somebody killed

Re: [sage-devel] Re: openblas segfault?

2016-09-26 Thread Jean-Pierre Flori
On Monday, September 26, 2016 at 11:47:00 AM UTC+2, Jonathan Bober wrote: > > On Mon, Sep 26, 2016 at 9:44 AM, Dima Pasechnik > wrote: > >> >> >> On Monday, September 26, 2016 at 2:22:51 AM UTC, Jonathan Bober wrote: >>> >>> I recompiled with gcc 6.1.0, and get the same

Re: [sage-devel] Re: [sagemath-admins] trac not responding

2016-09-26 Thread Dima Pasechnik
On Monday, September 26, 2016 at 9:04:08 AM UTC, Volker Braun wrote: > > Somebody killed unauthorized git:// over the weekend... incorrect firewall > rule? > It was William, I suppose. Actually, disabling anonymous git:// would perhaps help to reduce server load, without real functionality

Re: [sage-devel] Re: openblas segfault?

2016-09-26 Thread Jonathan Bober
On Mon, Sep 26, 2016 at 9:44 AM, Dima Pasechnik wrote: > > > On Monday, September 26, 2016 at 2:22:51 AM UTC, Jonathan Bober wrote: >> >> I recompiled with gcc 6.1.0, and get the same segfault. I did a ./sage -i >> gdb to get a better crash report, which is attached. I don't

Re: [sage-devel] Re: Trac unavailable again?

2016-09-26 Thread Jori Mäntysalo
On Mon, 26 Sep 2016, Dima Pasechnik wrote: i.e. you should see  trac        g...@trac.sagemath.org:sage.git (fetch)  trac        g...@trac.sagemath.org:sage.git (push)  Thanks! This works now. -- Jori Mäntysalo

Re: [sage-devel] Re: [sagemath-admins] trac not responding

2016-09-26 Thread Volker Braun
Somebody killed unauthorized git:// over the weekend... incorrect firewall rule? On Monday, September 26, 2016 at 10:52:13 AM UTC+2, Harald Schilly wrote: > > On Mon, Sep 26, 2016 at 10:16 AM, Dima Pasechnik > wrote: > > this really has to be documented properly. > > just

Re: [sage-devel] Re: [sagemath-admins] trac not responding

2016-09-26 Thread Harald Schilly
On Mon, Sep 26, 2016 at 10:16 AM, Dima Pasechnik wrote: > this really has to be documented properly. just added to your ticket a comment, repeating it here: it's not only the git-trac page, but also the "the hard way" page:

Re: [sage-devel] Re: Trac unavailable again?

2016-09-26 Thread Dima Pasechnik
On Monday, September 26, 2016 at 8:47:12 AM UTC, Dima Pasechnik wrote: > > > > On Monday, September 26, 2016 at 8:38:00 AM UTC, Jori Mäntysalo wrote: >> >> On Mon, 26 Sep 2016, Dima Pasechnik wrote: >> >> > please show us the output of >> > git remote -v >> >> origin

Re: [sage-devel] Re: Trac unavailable again?

2016-09-26 Thread Dima Pasechnik
On Monday, September 26, 2016 at 8:38:00 AM UTC, Jori Mäntysalo wrote: > > On Mon, 26 Sep 2016, Dima Pasechnik wrote: > > > please show us the output of > > git remote -v > > origingit://github.com/sagemath/sage.git (fetch) > origingit://github.com/sagemath/sage.git (push) >

Re: [sage-devel] Re: openblas segfault?

2016-09-26 Thread Dima Pasechnik
On Monday, September 26, 2016 at 2:22:51 AM UTC, Jonathan Bober wrote: > > I recompiled with gcc 6.1.0, and get the same segfault. I did a ./sage -i > gdb to get a better crash report, which is attached. I don't know if it is > useful. Also, it mentions some gcc 5.1.0 paths, which seems odd. I

Re: [sage-devel] Re: Trac unavailable again?

2016-09-26 Thread Jori Mäntysalo
On Mon, 26 Sep 2016, Dima Pasechnik wrote: please show us the output of git remote -v origin git://github.com/sagemath/sage.git (fetch) origin git://github.com/sagemath/sage.git (push) tracgit://trac.sagemath.org/sage.git (fetch) tracg...@trac.sagemath.org:sage.git (push) trac2

Re: [sage-devel] Re: [sagemath-admins] trac not responding

2016-09-26 Thread Dima Pasechnik
On Monday, September 26, 2016 at 8:16:56 AM UTC, Dima Pasechnik wrote: > > On Mon, Sep 26, 2016 at 7:50 AM, Harald Schilly > <> wrote: > > On Mon, Sep 26, 2016 at 3:51 AM, Jonathan Bober <> wrote: > >> tracgit://trac.sagemath.org/sage.git (fetch) > >> trac

[sage-devel] Re: Trac unavailable again?

2016-09-26 Thread Dima Pasechnik
please show us the output of git remote -v I suspect you have git protocol (i.e. git://...) remote for fetching, which don't work - you need git@... (i.e. ssh) remotes for both fetch and push. See https://github.com/sagemath/sage_trac_plugin/issues/18 On Monday, September 26, 2016 at

Re: [sage-devel] Re: [sagemath-admins] trac not responding

2016-09-26 Thread Dima Pasechnik
On Mon, Sep 26, 2016 at 7:50 AM, Harald Schilly wrote: > On Mon, Sep 26, 2016 at 3:51 AM, Jonathan Bober wrote: >> tracgit://trac.sagemath.org/sage.git (fetch) >> tracg...@trac.sagemath.org:sage.git (push) > > As a random idea, since several

Re: [sage-devel] Re: [sagemath-admins] trac not responding

2016-09-26 Thread Jori Mäntysalo
On Mon, 26 Sep 2016, Harald Schilly wrote: or maybe this: git remote add trac2 g...@trac.sagemath.org:sage.git git fetch trac2 and see if that works. Works, but then how to checkout tickets after that? -- Jori Mäntysalo

Re: [sage-devel] Re: [sagemath-admins] trac not responding

2016-09-26 Thread Harald Schilly
On Mon, Sep 26, 2016 at 3:51 AM, Jonathan Bober wrote: > tracgit://trac.sagemath.org/sage.git (fetch) > tracg...@trac.sagemath.org:sage.git (push) As a random idea, since several others were also asking me about this: Did you try setting both trac remotes to

[sage-devel] Trac unavailable again?

2016-09-26 Thread Jori Mäntysalo
$ git trac checkout 21592 Loading ticket #21592... Checking out Trac #21592 remote branch u/jmantysalo/note-colons -> local branch t/21592/note-colons... Traceback (most recent call last): . . . git_trac.git_error.GitError: git returned with non-zero exit code (128) when executing "git fetch