subject:"\[sage\-release\] Re\: Sage 6.10.rc2 binaries test"

Re: [sage-release] Re: Sage 6.10.rc2 binaries test

2015-12-22 Thread Volker Braun

The binaries are all built with SAGE_INSTALL_GCC=yes to be as 
self-contained as possible. AFAIK a default Ubuntu install doesn't include 
a fortran compiler, for example.

The LD_LIBRARY_PATH problem is fixed in Trac #19641



On Tuesday, December 22, 2015 at 9:40:25 AM UTC+1, Eric Gourgoulhon wrote:
>
> Hi,
>
> Le vendredi 18 décembre 2015 16:46:19 UTC+1, leif a écrit :
>>
>>
>> Not strange (although probably a flaw), but all binaries are built with 
>> SAGE_INSTALL_GCC=yes AFAIK, so Sage is mainly built with GCC 4.9.2 which 
>> ships with an older libstdc++. 
>>
>> The issue will presumably vanish when we get rid of setting 
>> LD_LIBRARY_PATH (and using sage-native-execute here and there); until 
>> then, you can simply create symlinks to your distro's libstdc++, 
>> libgfortran, etc. 
>>
>>
> Thanks for these explanations. 
> But this means that all Ubuntu 15.10 users will be facing the same issue. 
> Why are Sage binaries built with SAGE_INSTALL_GCC=yes instead of
> using gcc of the targeted system ? With Ubuntu 15.10, there is no problem 
> with the latter. Note that 15.10 is the latest Ubuntu version, so it is 
> somehow annoying if SageMath is shipping bad binaries for it, especially
> given the present discussion of making jupyter the default notebook. 
>
> Best wishes,
>
> Eric.
>

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Re: [sage-release] Re: Sage 6.10.rc2 binaries test

2015-12-22 Thread Eric Gourgoulhon

Hi,

Le vendredi 18 décembre 2015 16:46:19 UTC+1, leif a écrit :
>
>
> Not strange (although probably a flaw), but all binaries are built with 
> SAGE_INSTALL_GCC=yes AFAIK, so Sage is mainly built with GCC 4.9.2 which 
> ships with an older libstdc++. 
>
> The issue will presumably vanish when we get rid of setting 
> LD_LIBRARY_PATH (and using sage-native-execute here and there); until 
> then, you can simply create symlinks to your distro's libstdc++, 
> libgfortran, etc. 
>
>
Thanks for these explanations. 
But this means that all Ubuntu 15.10 users will be facing the same issue. 
Why are Sage binaries built with SAGE_INSTALL_GCC=yes instead of
using gcc of the targeted system ? With Ubuntu 15.10, there is no problem 
with the latter. Note that 15.10 is the latest Ubuntu version, so it is 
somehow annoying if SageMath is shipping bad binaries for it, especially
given the present discussion of making jupyter the default notebook. 

Best wishes,

Eric.

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Re: [sage-release] Re: Sage 6.10.rc2 binaries test

2015-12-22 Thread Eric Gourgoulhon


Le mardi 22 décembre 2015 09:58:41 UTC+1, Volker Braun a écrit :
>
> The binaries are all built with SAGE_INSTALL_GCC=yes to be as 
> self-contained as possible. AFAIK a default Ubuntu install doesn't include 
> a fortran compiler, for example.
>
> The LD_LIBRARY_PATH problem is fixed in Trac #19641
>

OK I see. 
But then there should be some warning somewhere telling the user to 
manually open http://localhost:/ and to not pay attention to the error 
message. Otherwise, I imagine many users will be disapointed (all the more 
that it worked well with Sage 6.9).

Best wishes,

Eric.
 

 

>
>
>
> On Tuesday, December 22, 2015 at 9:40:25 AM UTC+1, Eric Gourgoulhon wrote:
>>
>> Hi,
>>
>> Le vendredi 18 décembre 2015 16:46:19 UTC+1, leif a écrit :
>>>
>>>
>>> Not strange (although probably a flaw), but all binaries are built with 
>>> SAGE_INSTALL_GCC=yes AFAIK, so Sage is mainly built with GCC 4.9.2 which 
>>> ships with an older libstdc++. 
>>>
>>> The issue will presumably vanish when we get rid of setting 
>>> LD_LIBRARY_PATH (and using sage-native-execute here and there); until 
>>> then, you can simply create symlinks to your distro's libstdc++, 
>>> libgfortran, etc. 
>>>
>>>
>> Thanks for these explanations. 
>> But this means that all Ubuntu 15.10 users will be facing the same issue. 
>> Why are Sage binaries built with SAGE_INSTALL_GCC=yes instead of
>> using gcc of the targeted system ? With Ubuntu 15.10, there is no problem 
>> with the latter. Note that 15.10 is the latest Ubuntu version, so it is 
>> somehow annoying if SageMath is shipping bad binaries for it, especially
>> given the present discussion of making jupyter the default notebook. 
>>
>> Best wishes,
>>
>> Eric.
>>
>

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[sage-release] Re: Sage 6.10.rc2 binaries test

2015-12-18 Thread Eric Gourgoulhon

Hi, 

I've tested sage-6.10.rc2-Ubuntu_15.10-x86_64.tar on a Ubuntu 15.10 
computer and got the following issue:
./sage -n jupyter
results in the error message:
Please wait while the Sage Notebook server starts...
[I 11:01:15.391 NotebookApp] Using MathJax: nbextensions/mathjax/MathJax.js
[W 11:01:15.420 NotebookApp] Terminals not available (error was No module 
named terminado)
[I 11:01:15.421 NotebookApp] Serving notebooks from local directory: 
/home/eric/sage/sage-bin/SageMath
[I 11:01:15.421 NotebookApp] 0 active kernels 
[I 11:01:15.421 NotebookApp] The IPython Notebook is running at: 
http://localhost:/
[I 11:01:15.421 NotebookApp] Use Control-C to stop this server and shut 
down all kernels (twice to skip confirmation).
/home/eric/sage/sage-bin/SageMath/local/lib64/libstdc++.so.6: version 
`GLIBCXX_3.4.21' not found (required by 
/usr/lib/x86_64-linux-gnu/libproxy.so.1)
Failed to load module: 
/usr/lib/x86_64-linux-gnu/gio/modules/libgiolibproxy.so
/usr/lib/firefox/firefox: 
/home/eric/sage/sage-bin/SageMath/local/lib64/libstdc++.so.6: version 
`GLIBCXX_3.4.21' not found (required by /usr/lib/firefox/firefox)

As a consequence, the notebook is not automatically opened in Firefox. 
However, if I manually open http://localhost:/ everything is fine: 
Jupyter notebook works (including MathJax display and 3D graphics). 

For sage notebook, there is no problem: ./sage -n triggers the opening of a 
new Firefox tab. 

On the same computer, there is no such problem with a compiled version of 
sage 6.10.rc1: ./sage -n jupyter does open a new Firefox tab (and there is 
no message "version `GLIBCXX_3.4.21' not found").

Eric. 

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Re: [sage-release] Re: Sage 6.10.rc2 binaries test

2015-12-18 Thread Francois Bissey

Fun! Your distro is built with a gcc that is more recent than the one your sage
binary has been built with - and the libstdc++ from your distro is masked by 
the one from
sage.

François

> On 18/12/2015, at 23:10, Eric Gourgoulhon  wrote:
> 
> Hi, 
> 
> I've tested sage-6.10.rc2-Ubuntu_15.10-x86_64.tar on a Ubuntu 15.10 computer 
> and got the following issue:
> ./sage -n jupyter
> results in the error message:
> Please wait while the Sage Notebook server starts...
> [I 11:01:15.391 NotebookApp] Using MathJax: nbextensions/mathjax/MathJax.js
> [W 11:01:15.420 NotebookApp] Terminals not available (error was No module 
> named terminado)
> [I 11:01:15.421 NotebookApp] Serving notebooks from local directory: 
> /home/eric/sage/sage-bin/SageMath
> [I 11:01:15.421 NotebookApp] 0 active kernels 
> [I 11:01:15.421 NotebookApp] The IPython Notebook is running at: 
> http://localhost:/
> [I 11:01:15.421 NotebookApp] Use Control-C to stop this server and shut down 
> all kernels (twice to skip confirmation).
> /home/eric/sage/sage-bin/SageMath/local/lib64/libstdc++.so.6: version 
> `GLIBCXX_3.4.21' not found (required by 
> /usr/lib/x86_64-linux-gnu/libproxy.so.1)
> Failed to load module: /usr/lib/x86_64-linux-gnu/gio/modules/libgiolibproxy.so
> /usr/lib/firefox/firefox: 
> /home/eric/sage/sage-bin/SageMath/local/lib64/libstdc++.so.6: version 
> `GLIBCXX_3.4.21' not found (required by /usr/lib/firefox/firefox)
> 
> As a consequence, the notebook is not automatically opened in Firefox. 
> However, if I manually open http://localhost:/ everything is fine: 
> Jupyter notebook works (including MathJax display and 3D graphics). 
> 
> For sage notebook, there is no problem: ./sage -n triggers the opening of a 
> new Firefox tab. 
> 
> On the same computer, there is no such problem with a compiled version of 
> sage 6.10.rc1: ./sage -n jupyter does open a new Firefox tab (and there is no 
> message "version `GLIBCXX_3.4.21' not found").
> 
> Eric. 
> 
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Re: [sage-release] Re: Sage 6.10.rc2 binaries test

2015-12-18 Thread Henri Girard

Yes I wrote the same problem on 16.04. I run sage -n=ipython  and then I 
opened firefox. I noticed for me it's even better I just created an icon 
with sage -n=ipython (as application) so I don't see any terminal 
running and I run firefox. I noticed that file can be relocated in any 
dir, which is a good improvment.


Le 18/12/2015 11:10, Eric Gourgoulhon a écrit :

Hi,

I've tested sage-6.10.rc2-Ubuntu_15.10-x86_64.tar on a Ubuntu 15.10 
computer and got the following issue:

./sage -n jupyter
results in the error message:
Please wait while the Sage Notebook server starts...
[I 11:01:15.391 NotebookApp] Using MathJax: 
nbextensions/mathjax/MathJax.js
[W 11:01:15.420 NotebookApp] Terminals not available (error was No 
module named terminado)
[I 11:01:15.421 NotebookApp] Serving notebooks from local directory: 
/home/eric/sage/sage-bin/SageMath

[I 11:01:15.421 NotebookApp] 0 active kernels
[I 11:01:15.421 NotebookApp] The IPython Notebook is running at: 
http://localhost:/
[I 11:01:15.421 NotebookApp] Use Control-C to stop this server and 
shut down all kernels (twice to skip confirmation).
/home/eric/sage/sage-bin/SageMath/local/lib64/libstdc++.so.6: version 
`GLIBCXX_3.4.21' not found (required by 
/usr/lib/x86_64-linux-gnu/libproxy.so.1)
Failed to load module: 
/usr/lib/x86_64-linux-gnu/gio/modules/libgiolibproxy.so
/usr/lib/firefox/firefox: 
/home/eric/sage/sage-bin/SageMath/local/lib64/libstdc++.so.6: version 
`GLIBCXX_3.4.21' not found (required by /usr/lib/firefox/firefox)


As a consequence, the notebook is not automatically opened in Firefox.
However, if I manually open http://localhost:/ everything is fine: 
Jupyter notebook works (including MathJax display and 3D graphics).


For sage notebook, there is no problem: ./sage -n triggers the opening 
of a new Firefox tab.


On the same computer, there is no such problem with a compiled version 
of sage 6.10.rc1: ./sage -n jupyter does open a new Firefox tab (and 
there is no message "version `GLIBCXX_3.4.21' not found").


Eric.
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Re: [sage-release] Re: Sage 6.10.rc2 binaries test

2015-12-18 Thread Henri Girard


yes... But not fun :)

Le 18/12/2015 11:16, Francois Bissey a écrit :

Fun! Your distro is built with a gcc that is more recent than the one your sage
binary has been built with - and the libstdc++ from your distro is masked by 
the one from
sage.

François


On 18/12/2015, at 23:10, Eric Gourgoulhon  wrote:

Hi,

I've tested sage-6.10.rc2-Ubuntu_15.10-x86_64.tar on a Ubuntu 15.10 computer 
and got the following issue:
./sage -n jupyter
results in the error message:
Please wait while the Sage Notebook server starts...
[I 11:01:15.391 NotebookApp] Using MathJax: nbextensions/mathjax/MathJax.js
[W 11:01:15.420 NotebookApp] Terminals not available (error was No module named 
terminado)
[I 11:01:15.421 NotebookApp] Serving notebooks from local directory: 
/home/eric/sage/sage-bin/SageMath
[I 11:01:15.421 NotebookApp] 0 active kernels
[I 11:01:15.421 NotebookApp] The IPython Notebook is running at: 
http://localhost:/
[I 11:01:15.421 NotebookApp] Use Control-C to stop this server and shut down 
all kernels (twice to skip confirmation).
/home/eric/sage/sage-bin/SageMath/local/lib64/libstdc++.so.6: version 
`GLIBCXX_3.4.21' not found (required by /usr/lib/x86_64-linux-gnu/libproxy.so.1)
Failed to load module: /usr/lib/x86_64-linux-gnu/gio/modules/libgiolibproxy.so
/usr/lib/firefox/firefox: 
/home/eric/sage/sage-bin/SageMath/local/lib64/libstdc++.so.6: version 
`GLIBCXX_3.4.21' not found (required by /usr/lib/firefox/firefox)

As a consequence, the notebook is not automatically opened in Firefox.
However, if I manually open http://localhost:/ everything is fine: Jupyter 
notebook works (including MathJax display and 3D graphics).

For sage notebook, there is no problem: ./sage -n triggers the opening of a new 
Firefox tab.

On the same computer, there is no such problem with a compiled version of sage 6.10.rc1: 
./sage -n jupyter does open a new Firefox tab (and there is no message "version 
`GLIBCXX_3.4.21' not found").

Eric.

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Re: [sage-release] Re: Sage 6.10.rc2 binaries test

2015-12-18 Thread Henri Girard

I noticed too, that sagemanifolds compiled perfect on the rc2 version. I 
think I have gcc 5xx.


Le 18/12/2015 11:16, Francois Bissey a écrit :

Fun! Your distro is built with a gcc that is more recent than the one your sage
binary has been built with - and the libstdc++ from your distro is masked by 
the one from
sage.

François


On 18/12/2015, at 23:10, Eric Gourgoulhon  wrote:

Hi,

I've tested sage-6.10.rc2-Ubuntu_15.10-x86_64.tar on a Ubuntu 15.10 computer 
and got the following issue:
./sage -n jupyter
results in the error message:
Please wait while the Sage Notebook server starts...
[I 11:01:15.391 NotebookApp] Using MathJax: nbextensions/mathjax/MathJax.js
[W 11:01:15.420 NotebookApp] Terminals not available (error was No module named 
terminado)
[I 11:01:15.421 NotebookApp] Serving notebooks from local directory: 
/home/eric/sage/sage-bin/SageMath
[I 11:01:15.421 NotebookApp] 0 active kernels
[I 11:01:15.421 NotebookApp] The IPython Notebook is running at: 
http://localhost:/
[I 11:01:15.421 NotebookApp] Use Control-C to stop this server and shut down 
all kernels (twice to skip confirmation).
/home/eric/sage/sage-bin/SageMath/local/lib64/libstdc++.so.6: version 
`GLIBCXX_3.4.21' not found (required by /usr/lib/x86_64-linux-gnu/libproxy.so.1)
Failed to load module: /usr/lib/x86_64-linux-gnu/gio/modules/libgiolibproxy.so
/usr/lib/firefox/firefox: 
/home/eric/sage/sage-bin/SageMath/local/lib64/libstdc++.so.6: version 
`GLIBCXX_3.4.21' not found (required by /usr/lib/firefox/firefox)

As a consequence, the notebook is not automatically opened in Firefox.
However, if I manually open http://localhost:/ everything is fine: Jupyter 
notebook works (including MathJax display and 3D graphics).

For sage notebook, there is no problem: ./sage -n triggers the opening of a new 
Firefox tab.

On the same computer, there is no such problem with a compiled version of sage 6.10.rc1: 
./sage -n jupyter does open a new Firefox tab (and there is no message "version 
`GLIBCXX_3.4.21' not found").

Eric.

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Re: [sage-release] Re: Sage 6.10.rc2 binaries test

2015-12-18 Thread Eric Gourgoulhon



Le vendredi 18 décembre 2015 11:16:05 UTC+1, François a écrit :
>
> Fun! Your distro is built with a gcc that is more recent than the one your 
> sage 
> binary has been built with - and the libstdc++ from your distro is masked 
> by the one from 
> sage. 
>

What is strange is that the sage binary is called "Ubuntu 15.10" and my 
distro is exactly that one, with the standard gcc shipped with it, i.e. gcc 
5.2.1. 
  

>
> François 
>
> > On 18/12/2015, at 23:10, Eric Gourgoulhon  > wrote: 
> > 
> > Hi, 
> > 
> > I've tested sage-6.10.rc2-Ubuntu_15.10-x86_64.tar on a Ubuntu 15.10 
> computer and got the following issue: 
> > ./sage -n jupyter 
> > results in the error message: 
> > Please wait while the Sage Notebook server starts... 
> > [I 11:01:15.391 NotebookApp] Using MathJax: 
> nbextensions/mathjax/MathJax.js 
> > [W 11:01:15.420 NotebookApp] Terminals not available (error was No 
> module named terminado) 
> > [I 11:01:15.421 NotebookApp] Serving notebooks from local directory: 
> /home/eric/sage/sage-bin/SageMath 
> > [I 11:01:15.421 NotebookApp] 0 active kernels 
> > [I 11:01:15.421 NotebookApp] The IPython Notebook is running at: 
> http://localhost:/ 
> > [I 11:01:15.421 NotebookApp] Use Control-C to stop this server and shut 
> down all kernels (twice to skip confirmation). 
> > /home/eric/sage/sage-bin/SageMath/local/lib64/libstdc++.so.6: version 
> `GLIBCXX_3.4.21' not found (required by 
> /usr/lib/x86_64-linux-gnu/libproxy.so.1) 
> > Failed to load module: 
> /usr/lib/x86_64-linux-gnu/gio/modules/libgiolibproxy.so 
> > /usr/lib/firefox/firefox: 
> /home/eric/sage/sage-bin/SageMath/local/lib64/libstdc++.so.6: version 
> `GLIBCXX_3.4.21' not found (required by /usr/lib/firefox/firefox) 
> > 
> > As a consequence, the notebook is not automatically opened in Firefox. 
> > However, if I manually open http://localhost:/ everything is fine: 
> Jupyter notebook works (including MathJax display and 3D graphics). 
> > 
> > For sage notebook, there is no problem: ./sage -n triggers the opening 
> of a new Firefox tab. 
> > 
> > On the same computer, there is no such problem with a compiled version 
> of sage 6.10.rc1: ./sage -n jupyter does open a new Firefox tab (and there 
> is no message "version `GLIBCXX_3.4.21' not found"). 
> > 
> > Eric. 
> > 
> > -- 
> > You received this message because you are subscribed to the Google 
> Groups "sage-release" group. 
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> an email to sage-release...@googlegroups.com . 
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> > For more options, visit https://groups.google.com/d/optout. 
>
>

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Re: [sage-release] Re: Sage 6.10.rc2 binaries test

2015-12-18 Thread leif

Eric Gourgoulhon wrote:
> Le vendredi 18 décembre 2015 11:16:05 UTC+1, François a écrit :
> 
> Fun! Your distro is built with a gcc that is more recent than the
> one your sage
> binary has been built with - and the libstdc++ from your distro is
> masked by the one from
> sage.
> 
> 
> What is strange is that the sage binary is called "Ubuntu 15.10" and my
> distro is exactly that one, with the standard gcc shipped with it, i.e.
> gcc 5.2.1.

Not strange (although probably a flaw), but all binaries are built with
SAGE_INSTALL_GCC=yes AFAIK, so Sage is mainly built with GCC 4.9.2 which
ships with an older libstdc++.

The issue will presumably vanish when we get rid of setting
LD_LIBRARY_PATH (and using sage-native-execute here and there); until
then, you can simply create symlinks to your distro's libstdc++,
libgfortran, etc.

-leif

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[sage-release] Re: Sage 6.10.rc2 binaries test

2015-12-17 Thread Eric Gourgoulhon

I've tested sage-6.10.rc2-Ubuntu_14.04-x86_64.tar.bz2.
Looks good to me (the Jupyter issues are fixed). Thanks.

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[sage-release] Re: Sage 6.10.rc2 binaries test

2015-12-17 Thread Henri Girard


Sorry I just read your message... http... works



Le 18/12/2015 00:55, Henri Girard a écrit :

Hi,
I have these annoying message with ./sage -n=ipython
I does work well on ./sage -n
Any help ?
Regards
Henri


./sage -n=ipython
┌┐
│ SageMath Version 6.10.rc2, Release Date: 2015-12-16 │
│ Type "notebook()" for the browser-based notebook interface. │
│ Type "help()" for help. │
└┘
┏┓
┃ Warning: this is a prerelease version, and it may be unstable. ┃
┗┛
Please wait while the Sage Notebook server starts...
[I 00:52:18.922 NotebookApp] Using MathJax: 
nbextensions/mathjax/MathJax.js
[I 00:52:18.937 NotebookApp] Writing notebook server cookie secret to 
/run/user/1000/jupyter/notebook_cookie_secret
[W 00:52:19.038 NotebookApp] Terminals not available (error was No 
module named terminado)
[I 00:52:19.038 NotebookApp] Serving notebooks from local directory: 
/home/riri/sage

[I 00:52:19.039 NotebookApp] 0 active kernels
[I 00:52:19.039 NotebookApp] The IPython Notebook is running at: 
http://localhost:/
[I 00:52:19.039 NotebookApp] Use Control-C to stop this server and 
shut down all kernels (twice to skip confirmation).
/home/riri/sage/local/lib64/libstdc++.so.6: version `GLIBCXX_3.4.21' 
not found (required by /usr/lib/x86_64-linux-gnu/libproxy.so.1)
Failed to load module: 
/usr/lib/x86_64-linux-gnu/gio/modules/libgiolibproxy.so
/usr/lib/firefox/firefox: /home/riri/sage/local/lib64/libstdc++.so.6: 
version `GLIBCXX_3.4.21' not found (required by /usr/lib/firefox/firefox)





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Re: [sage-release] Re: Sage 6.10.rc2 binaries test

Re: [sage-release] Re: Sage 6.10.rc2 binaries test

Re: [sage-release] Re: Sage 6.10.rc2 binaries test

[sage-release] Re: Sage 6.10.rc2 binaries test

Re: [sage-release] Re: Sage 6.10.rc2 binaries test

Re: [sage-release] Re: Sage 6.10.rc2 binaries test

Re: [sage-release] Re: Sage 6.10.rc2 binaries test

Re: [sage-release] Re: Sage 6.10.rc2 binaries test

Re: [sage-release] Re: Sage 6.10.rc2 binaries test

Re: [sage-release] Re: Sage 6.10.rc2 binaries test

[sage-release] Re: Sage 6.10.rc2 binaries test

[sage-release] Re: Sage 6.10.rc2 binaries test

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