Re: [sage-release] Re: Sage 8.3.beta1 released

[John Cremona]

Built 8.3.beta1 from scratch (after make distclean at least after
previously reported pip version issues).  Two failing files both
complaining that lrslib is not found:

sage -t --long src/sage/game_theory/normal_form_game.py  # 2 doctests failed
sage -t --long src/sage/game_theory/catalog_normal_form_games.py  # 15
doctests failed

all failures report "   PackageNotFoundError: the package 'lrslib' was not
found. You can install it by running 'sage -i lrslib' in a shell  "

That looks like some optional doctests have not been marked #optional,
perhaps?

On 17 May 2018 at 14:28, Eric Gourgoulhon  wrote:

> On Ubuntu 16.04 x86_64 Xeon E5-2623 + 16 GB RAM, from a fresh git clone +
> pull develop, parallel (-j16) build OK and make ptestlong failed with 4
> transient doctests. 3 of them are  due to "Jmol failed to create file", as
> usual on this computer (race error?), but the 4th one is a different type:
>
> sage -t --long --warn-long 51.8 src/sage/schemes/elliptic_curves/padics.py
> **
> File "src/sage/schemes/elliptic_curves/padics.py", line 878, in
> sage.schemes.elliptic_curves.padics.padic_height_via_multiply
> Failed example:
> for prec in range(2, max_prec): # long time
> assert E.padic_height_via_multiply(5, prec)(P) == full   # long
> time
> Exception raised:
> Traceback (most recent call last):
>   File "/home/eric/sage/8.3.beta1/local/lib/python2.7/site-
> packages/sage/doctest/forker.py", line 562, in _run
> self.compile_and_execute(example, compiler, test.globs)
>   File "/home/eric/sage/8.3.beta1/local/lib/python2.7/site-
> packages/sage/doctest/forker.py", line 972, in compile_and_execute
> exec(compiled, globs)
>   File " sage.schemes.elliptic_curves.padics.padic_height_via_multiply[13]>",
> line 2, in 
> assert E.padic_height_via_multiply(Integer(5), prec)(P) == full
> # long time
>   File "/home/eric/sage/8.3.beta1/local/lib/python2.7/site-
> packages/sage/schemes/elliptic_curves/padics.py", line 908, in
> padic_height_via_multiply
> sigma = self.padic_sigma_truncated(p, N=adjusted_prec, E2=E2,
> lamb=lamb)
>   File "/home/eric/sage/8.3.beta1/local/lib/python2.7/site-
> packages/sage/schemes/elliptic_curves/padics.py", line 1285, in
> padic_sigma_truncated
> E2 = self.padic_E2(p, N-2, check_hypotheses=False)
>   File "/home/eric/sage/8.3.beta1/local/lib/python2.7/site-
> packages/sage/schemes/elliptic_curves/padics.py", line 1506, in padic_E2
> frob_p = self.matrix_of_frobenius(p, prec, check,
> check_hypotheses, algorithm).change_ring(Integers(p**prec))
>   File "/home/eric/sage/8.3.beta1/local/lib/python2.7/site-
> packages/sage/schemes/elliptic_curves/padics.py", line 1657, in
> matrix_of_frobenius
> Q, p, adjusted_prec, trace)
>   File "/home/eric/sage/8.3.beta1/local/lib/python2.7/site-
> packages/sage/schemes/hyperelliptic_curves/monsky_washnitzer.py", line
> 1659, in matrix_of_frobenius
> F1_reduced = reduce_all(Q, p, F1_coeffs, offset)
>   File "/home/eric/sage/8.3.beta1/local/lib/python2.7/site-
> packages/sage/schemes/hyperelliptic_curves/monsky_washnitzer.py", line
> 1024, in reduce_all
> exact_form = reduce_negative(Q, p, coeffs, offset, exact_form)
>   File "/home/eric/sage/8.3.beta1/local/lib/python2.7/site-
> packages/sage/schemes/hyperelliptic_curves/monsky_washnitzer.py", line
> 800, in reduce_negative
> a[1] = base_ring(lift(a[1]) / (j+1))
>   File "sage/structure/parent.pyx", line 920, in
> sage.structure.parent.Parent.__call__ (build/cythonized/sage/
> structure/parent.c:9734)
> return mor._call_(x)
>   File "sage/structure/coerce_maps.pyx", line 145, in
> sage.structure.coerce_maps.DefaultConvertMap_unique._call_
> (build/cythonized/sage/structure/coerce_maps.c:4555)
> raise
>   File "sage/structure/coerce_maps.pyx", line 140, in
> sage.structure.coerce_maps.DefaultConvertMap_unique._call_
> (build/cythonized/sage/structure/coerce_maps.c:4423)
> return C._element_constructor(x)
>   File "/home/eric/sage/8.3.beta1/local/lib/python2.7/site-
> packages/sage/rings/finite_rings/integer_mod_ring.py", line 1168, in
> _element_constructor_
> return integer_mod.IntegerMod(self, x)
>   File "sage/rings/finite_rings/integer_mod.pyx", line 197, in
> sage.rings.finite_rings.integer_mod.IntegerMod
> (build/cythonized/sage/rings/finite_rings/integer_mod.c:4557)
> return t(parent, value)
>   File "sage/rings/finite_rings/integer_mod.pyx", line 350, in
> sage.rings.finite_rings.integer_mod.IntegerMod_abstract.__init__
> (build/cythonized/sage/rings/finite_rings/integer_mod.c:5738)
> z = value % self.__modulus.sageInteger
>   File "sage/rings/rational.pyx", line 2867, in
> sage.rings.rational.Rational.__mod__ (build/cythonized/sage/rings/
> rational.c:25746)
> d 

[sage-release] Re: Sage 8.3.beta1 released

[Eric Gourgoulhon]

On Ubuntu 16.04 x86_64 Xeon E5-2623 + 16 GB RAM, from a fresh git clone + 
pull develop, parallel (-j16) build OK and make ptestlong failed with 4 
transient doctests. 3 of them are  due to "Jmol failed to create file", as 
usual on this computer (race error?), but the 4th one is a different type:

sage -t --long --warn-long 51.8 src/sage/schemes/elliptic_curves/padics.py
**
File "src/sage/schemes/elliptic_curves/padics.py", line 878, in 
sage.schemes.elliptic_curves.padics.padic_height_via_multiply
Failed example:
for prec in range(2, max_prec): # long time
assert E.padic_height_via_multiply(5, prec)(P) == full   # long time
Exception raised:
Traceback (most recent call last):
  File 
"/home/eric/sage/8.3.beta1/local/lib/python2.7/site-packages/sage/doctest/forker.py",
 
line 562, in _run
self.compile_and_execute(example, compiler, test.globs)
  File 
"/home/eric/sage/8.3.beta1/local/lib/python2.7/site-packages/sage/doctest/forker.py",
 
line 972, in compile_and_execute
exec(compiled, globs)
  File "", line 
2, in 
assert E.padic_height_via_multiply(Integer(5), prec)(P) == full   # 
long time
  File 
"/home/eric/sage/8.3.beta1/local/lib/python2.7/site-packages/sage/schemes/elliptic_curves/padics.py",
 
line 908, in padic_height_via_multiply
sigma = self.padic_sigma_truncated(p, N=adjusted_prec, E2=E2, 
lamb=lamb)
  File 
"/home/eric/sage/8.3.beta1/local/lib/python2.7/site-packages/sage/schemes/elliptic_curves/padics.py",
 
line 1285, in padic_sigma_truncated
E2 = self.padic_E2(p, N-2, check_hypotheses=False)
  File 
"/home/eric/sage/8.3.beta1/local/lib/python2.7/site-packages/sage/schemes/elliptic_curves/padics.py",
 
line 1506, in padic_E2
frob_p = self.matrix_of_frobenius(p, prec, check, check_hypotheses, 
algorithm).change_ring(Integers(p**prec))
  File 
"/home/eric/sage/8.3.beta1/local/lib/python2.7/site-packages/sage/schemes/elliptic_curves/padics.py",
 
line 1657, in matrix_of_frobenius
Q, p, adjusted_prec, trace)
  File 
"/home/eric/sage/8.3.beta1/local/lib/python2.7/site-packages/sage/schemes/hyperelliptic_curves/monsky_washnitzer.py",
 
line 1659, in matrix_of_frobenius
F1_reduced = reduce_all(Q, p, F1_coeffs, offset)
  File 
"/home/eric/sage/8.3.beta1/local/lib/python2.7/site-packages/sage/schemes/hyperelliptic_curves/monsky_washnitzer.py",
 
line 1024, in reduce_all
exact_form = reduce_negative(Q, p, coeffs, offset, exact_form)
  File 
"/home/eric/sage/8.3.beta1/local/lib/python2.7/site-packages/sage/schemes/hyperelliptic_curves/monsky_washnitzer.py",
 
line 800, in reduce_negative
a[1] = base_ring(lift(a[1]) / (j+1))
  File "sage/structure/parent.pyx", line 920, in 
sage.structure.parent.Parent.__call__ 
(build/cythonized/sage/structure/parent.c:9734)
return mor._call_(x)
  File "sage/structure/coerce_maps.pyx", line 145, in 
sage.structure.coerce_maps.DefaultConvertMap_unique._call_ 
(build/cythonized/sage/structure/coerce_maps.c:4555)
raise
  File "sage/structure/coerce_maps.pyx", line 140, in 
sage.structure.coerce_maps.DefaultConvertMap_unique._call_ 
(build/cythonized/sage/structure/coerce_maps.c:4423)
return C._element_constructor(x)
  File 
"/home/eric/sage/8.3.beta1/local/lib/python2.7/site-packages/sage/rings/finite_rings/integer_mod_ring.py",
 
line 1168, in _element_constructor_
return integer_mod.IntegerMod(self, x)
  File "sage/rings/finite_rings/integer_mod.pyx", line 197, in 
sage.rings.finite_rings.integer_mod.IntegerMod 
(build/cythonized/sage/rings/finite_rings/integer_mod.c:4557)
return t(parent, value)
  File "sage/rings/finite_rings/integer_mod.pyx", line 350, in 
sage.rings.finite_rings.integer_mod.IntegerMod_abstract.__init__ 
(build/cythonized/sage/rings/finite_rings/integer_mod.c:5738)
z = value % self.__modulus.sageInteger
  File "sage/rings/rational.pyx", line 2867, in 
sage.rings.rational.Rational.__mod__ 
(build/cythonized/sage/rings/rational.c:25746)
d = d.inverse_mod(other)
  File "sage/rings/integer.pyx", line 6607, in 
sage.rings.integer.Integer.inverse_mod 
(build/cythonized/sage/rings/integer.c:41598)
raise ZeroDivisionError("Inverse does not exist.")
ZeroDivisionError: Inverse does not exist.
**
1 item had failures:
   1 of  15 in sage.schemes.elliptic_curves.padics.padic_height_via_multiply
[199 tests, 1 failure, 15.26 s]

Again, the error is transient: all doctests in that file are passed when 
run standalone:

./sage -t --long --warn-long 51.8 src/sage/schemes/elliptic_curves/padics.py
Running doctests with ID 2018-05-17-15-21-32-76509919.
Git branch: develop
Using --optional=mpir,python2,sage
Doctesting 1 file.
sage -t --long --warn-long 51.8 

[sage-release] Re: Sage 8.3.beta1 released

[Sébastien Labbé]

On Tuesday, May 15, 2018 at 9:24:26 PM UTC+2, Sébastien Labbé wrote:
>
> On Ubuntu 16.04, the command `./sage -t -p --all --long 
> --optional=sage,optional,external` finishes with:
>
> --
> sage -t --long src/sage/coding/code_constructions.py  # 1 doctest failed
> --
> Total time for all tests: 1821.3 seconds
> cpu time: 11639.5 seconds
> cumulative wall time: 14059.4 seconds
> External software detected for doctesting: gurobi,latex
> Traceback (most recent call last):
>   File "/home/slabbe/GitBox/sage/src/bin/sage-runtests", line 127, in 
> 
> err = DC.run()
>   File 
> "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/doctest/control.py",
>  
> line 1176, in run
> + ','.join(available_software.seen()))
>   File 
> "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/doctest/control.py",
>  
> line 583, in log
> self.logger.write(s + end)
>   File 
> "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/doctest/control.py",
>  
> line 250, in write
> f.write(x)
> ValueError: I/O operation on closed file
>
>
>
I created  https://trac.sagemath.org/ticket/25378 for the ValueError: I/O 
operation on closed file

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Re: [sage-release] Re: Sage 8.3.beta1 released

[John Cremona]

On 16 May 2018 at 22:15, Jeroen Demeyer  wrote:

> On 2018-05-16 17:26, Erik Bray wrote:
>
>> I'm not sure, but I think this might be pip-related.  I think Jeroen
>> mentioned something about this to me a couple weeks ago.  Is it
>> possible you upgraded the pip in your Sage install?
>>
>
> Indeed, I guess you are using pip 10 by accident.
>

I think so.  I killed that build, downgraded pip, and restarted make.
Something was confused enough that I then just did "make distclean && make"
and now all is well.


>
> It might be a good idea to upgrade the pip in Sage and fix this issue.


I myself have no idea what the implications of that might be!

John


>
>
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Re: [sage-release] Re: Sage 8.3.beta1 released

[Vincent Delecroix]

On 15/05/2018 21:24, Sébastien Labbé wrote:

On Ubuntu 16.04, the command `./sage -t -p --all --long
--optional=sage,optional,external` finishes with:

sage -t --long src/sage/coding/code_constructions.py
**
File "src/sage/coding/code_constructions.py", line 624, in
sage.coding.code_constructions.QuadraticResidueCodeOddPair
Failed example:
 codes.QuadraticResidueCodeOddPair(17, GF(13))
Exception raised:
 Traceback (most recent call last):
 Ring morphism:
   From: Finite Field of size 13
   To:   Finite Field in z of size 13^4
**
1 item had failures:
1 of  13 in sage.coding.code_constructions.QuadraticResidueCodeOddPair
 [146 tests, 1 failure, 2.56 s]


Same error at

https://patchbot.sagemath.org/log/24783/Ubuntu/16.04/x86_64/4.4.0-124-generic/quasar/2018-05-16%2012:29:14?short

I opened ticket #25379

Vincent

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Re: [sage-release] Re: Sage 8.3.beta1 released

[Jeroen Demeyer]

On 2018-05-16 17:26, Erik Bray wrote:

I'm not sure, but I think this might be pip-related.  I think Jeroen
mentioned something about this to me a couple weeks ago.  Is it
possible you upgraded the pip in your Sage install?


Indeed, I guess you are using pip 10 by accident.

It might be a good idea to upgrade the pip in Sage and fix this issue.

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Re: [sage-release] Re: Sage 8.3.beta1 released

[Maarten Derickx]

pip should be able to uninstall itself so

sage -pip uninstall pip
sage -i pip

should give you the standard sage version of pip back. I did not test this, 
so use at your own risk.

On Wednesday, 16 May 2018 17:33:50 UTC+2, John Cremona wrote:
>
>
>
> On Wed, 16 May 2018, 16:26 Erik Bray,  
> wrote:
>
>> On Wed, May 16, 2018 at 9:56 AM, John Cremona > > wrote:
>> > I started to build this yesterday after pulling from trac into a place 
>> where
>> > beta0 had already built OK.  This morning I find the lines
>> >
>> > [scipy-0.19.1] Skipping scipy as it is not installed.
>> > [scipy-0.19.1] Skipping scipy as it is not installed.
>> > [scipy-0.19.1] Skipping scipy as it is not installed.
>> > [scipy-0.19.1] Skipping scipy as it is not installed.
>> > [scipy-0.19.1] Skipping scipy as it is not installed.
>> > [scipy-0.19.1] Skipping scipy as it is not installed.
>> > [scipy-0.19.1] Skipping scipy as it is not installed.
>> > [scipy-0.19.1] Skipping scipy as it is not installed.
>> > [scipy-0.19.1] Skipping scipy as it is not installed.
>> > [scipy-0.19.1] Skipping scipy as it is not installed.
>> > [scipy-0.19.1] Skipping scipy as it is not installed.
>> > [scipy-0.19.1] Skipping scipy as it is not installed.
>> > [scipy-0.19.1] Skipping scipy as it is not installed.
>> > [scipy-0.19.1] Skipping scipy as it is not installed.
>> > [scipy-0.19.1] Skipping scipy as it is not installed.
>> > [scipy-0.19.1] Skipping scipy as it is not installed.
>> > [scipy-0.19.1] Skipping scipy as it is not installed.
>> > [scipy-0.19.1] Skipping scipy as it is not installed.
>> > [scipy-0.19.1] Skipping scipy as it is not installed.
>> > [scipy-0.19.1] Skipping scipy as it is not installed.
>> > [scipy-0.19.1] Skipping scipy as it is not installed.
>> > [scipy-0.19.1] Skipping scipy as it is not installed.
>> > [scipy-0.19.1] Skipping scipy as it is not installed.
>> > [scipy-0.19.1] Skipping scipy as it is not installed.
>> > [scipy-0.19.1] Skipping scipy as it is not installed.
>> >
>> > being repeated for ever.  I have left that going in case someone wants 
>> to
>> > see any log files.
>>
>> I'm not sure, but I think this might be pip-related.  I think Jeroen
>> mentioned something about this to me a couple weeks ago.  Is it
>> possible you upgraded the pip in your Sage install?
>>
>>
> Yes I did!  I had installed some stuff needed for LMFDB using sage -i pip 
>> instal ...  and it told me my pip was not the most recent and should be 
>> upgraded, so I did.
>>
>
> What should I do?
>
>
>>
>>
>>
>>
>> > On 16 May 2018 at 08:44, Henri Girard > > wrote:
>> >>
>> >> Bionic 18.04 AMD x8 64 bits, compile perfect. I started from fresh git
>> >> sage because upgrading from 8.2 failed. It couldn't find many libs. By 
>> the
>> >> way I found my crash problem while compiling : I had to config the bios
>> >> allowing warmer processing.
>> >>
>> >>
>> >> Le 15/05/2018 à 21:24, Sébastien Labbé a écrit :
>> >>
>> >> On Ubuntu 16.04, the command `./sage -t -p --all --long
>> >> --optional=sage,optional,external` finishes with:
>> >>
>> >> --
>> >> sage -t --long src/sage/coding/code_constructions.py  # 1 doctest 
>> failed
>> >> --
>> >> Total time for all tests: 1821.3 seconds
>> >> cpu time: 11639.5 seconds
>> >> cumulative wall time: 14059.4 seconds
>> >> External software detected for doctesting: gurobi,latex
>> >> Traceback (most recent call last):
>> >>   File "/home/slabbe/GitBox/sage/src/bin/sage-runtests", line 127, in
>> >> 
>> >> err = DC.run()
>> >>   File
>> >> 
>> "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/doctest/control.py",
>> >> line 1176, in run
>> >> + ','.join(available_software.seen()))
>> >>   File
>> >> 
>> "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/doctest/control.py",
>> >> line 583, in log
>> >> self.logger.write(s + end)
>> >>   File
>> >> 
>> "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/doctest/control.py",
>> >> line 250, in write
>> >> f.write(x)
>> >> ValueError: I/O operation on closed file
>> >>
>> >>
>> >> The code_construction error is copied below (I can not reproduce it) :
>> >>
>> >>
>> >>
>> >> sage -t --long src/sage/coding/code_constructions.py
>> >> **
>> >> File "src/sage/coding/code_constructions.py", line 624, in
>> >> sage.coding.code_constructions.QuadraticResidueCodeOddPair
>> >> Failed example:
>> >> codes.QuadraticResidueCodeOddPair(17, GF(13))
>> >> Exception raised:
>> >> Traceback (most recent call last):
>> >>   File
>> >> 
>> "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/doctest/forker.py",
>> >> line 562, in _run
>> >> self.compile_and_execute(example, compiler, test.globs)
>> >>   File

Re: [sage-release] Re: Sage 8.3.beta1 released

[Erik Bray]

On Wed, May 16, 2018 at 9:56 AM, John Cremona  wrote:
> I started to build this yesterday after pulling from trac into a place where
> beta0 had already built OK.  This morning I find the lines
>
> [scipy-0.19.1] Skipping scipy as it is not installed.
> [scipy-0.19.1] Skipping scipy as it is not installed.
> [scipy-0.19.1] Skipping scipy as it is not installed.
> [scipy-0.19.1] Skipping scipy as it is not installed.
> [scipy-0.19.1] Skipping scipy as it is not installed.
> [scipy-0.19.1] Skipping scipy as it is not installed.
> [scipy-0.19.1] Skipping scipy as it is not installed.
> [scipy-0.19.1] Skipping scipy as it is not installed.
> [scipy-0.19.1] Skipping scipy as it is not installed.
> [scipy-0.19.1] Skipping scipy as it is not installed.
> [scipy-0.19.1] Skipping scipy as it is not installed.
> [scipy-0.19.1] Skipping scipy as it is not installed.
> [scipy-0.19.1] Skipping scipy as it is not installed.
> [scipy-0.19.1] Skipping scipy as it is not installed.
> [scipy-0.19.1] Skipping scipy as it is not installed.
> [scipy-0.19.1] Skipping scipy as it is not installed.
> [scipy-0.19.1] Skipping scipy as it is not installed.
> [scipy-0.19.1] Skipping scipy as it is not installed.
> [scipy-0.19.1] Skipping scipy as it is not installed.
> [scipy-0.19.1] Skipping scipy as it is not installed.
> [scipy-0.19.1] Skipping scipy as it is not installed.
> [scipy-0.19.1] Skipping scipy as it is not installed.
> [scipy-0.19.1] Skipping scipy as it is not installed.
> [scipy-0.19.1] Skipping scipy as it is not installed.
> [scipy-0.19.1] Skipping scipy as it is not installed.
>
> being repeated for ever.  I have left that going in case someone wants to
> see any log files.

I'm not sure, but I think this might be pip-related.  I think Jeroen
mentioned something about this to me a couple weeks ago.  Is it
possible you upgraded the pip in your Sage install?



> On 16 May 2018 at 08:44, Henri Girard  wrote:
>>
>> Bionic 18.04 AMD x8 64 bits, compile perfect. I started from fresh git
>> sage because upgrading from 8.2 failed. It couldn't find many libs. By the
>> way I found my crash problem while compiling : I had to config the bios
>> allowing warmer processing.
>>
>>
>> Le 15/05/2018 à 21:24, Sébastien Labbé a écrit :
>>
>> On Ubuntu 16.04, the command `./sage -t -p --all --long
>> --optional=sage,optional,external` finishes with:
>>
>> --
>> sage -t --long src/sage/coding/code_constructions.py  # 1 doctest failed
>> --
>> Total time for all tests: 1821.3 seconds
>> cpu time: 11639.5 seconds
>> cumulative wall time: 14059.4 seconds
>> External software detected for doctesting: gurobi,latex
>> Traceback (most recent call last):
>>   File "/home/slabbe/GitBox/sage/src/bin/sage-runtests", line 127, in
>> 
>> err = DC.run()
>>   File
>> "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/doctest/control.py",
>> line 1176, in run
>> + ','.join(available_software.seen()))
>>   File
>> "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/doctest/control.py",
>> line 583, in log
>> self.logger.write(s + end)
>>   File
>> "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/doctest/control.py",
>> line 250, in write
>> f.write(x)
>> ValueError: I/O operation on closed file
>>
>>
>> The code_construction error is copied below (I can not reproduce it) :
>>
>>
>>
>> sage -t --long src/sage/coding/code_constructions.py
>> **
>> File "src/sage/coding/code_constructions.py", line 624, in
>> sage.coding.code_constructions.QuadraticResidueCodeOddPair
>> Failed example:
>> codes.QuadraticResidueCodeOddPair(17, GF(13))
>> Exception raised:
>> Traceback (most recent call last):
>>   File
>> "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/doctest/forker.py",
>> line 562, in _run
>> self.compile_and_execute(example, compiler, test.globs)
>>   File
>> "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/doctest/forker.py",
>> line 972, in compile_and_execute
>> exec(compiled, globs)
>>   File "> sage.coding.code_constructions.QuadraticResidueCodeOddPair[0]>", line 1, in
>> 
>> codes.QuadraticResidueCodeOddPair(Integer(17), GF(Integer(13)))
>>   File
>> "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/coding/code_constructions.py",
>> line 666, in Quadratic
>> ResidueCodeOddPair
>> return DuadicCodeOddPair(F,Q,N)
>>   File
>> "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/coding/code_constructions.py",
>> line 425, in DuadicCod
>> eOddPair
>> gg1 = P2(coeffs1)
>>   File "sage/structure/parent.pyx", line 920, in
>> sage.structure.parent.Parent.__call__ (build/cythonized/sage/structure/paren
>> 

Re: [sage-release] Re: Sage 8.3.beta1 released

[John Cremona]

I started to build this yesterday after pulling from trac into a place
where beta0 had already built OK.  This morning I find the lines

[scipy-0.19.1] Skipping scipy as it is not installed.
[scipy-0.19.1] Skipping scipy as it is not installed.
[scipy-0.19.1] Skipping scipy as it is not installed.
[scipy-0.19.1] Skipping scipy as it is not installed.
[scipy-0.19.1] Skipping scipy as it is not installed.
[scipy-0.19.1] Skipping scipy as it is not installed.
[scipy-0.19.1] Skipping scipy as it is not installed.
[scipy-0.19.1] Skipping scipy as it is not installed.
[scipy-0.19.1] Skipping scipy as it is not installed.
[scipy-0.19.1] Skipping scipy as it is not installed.
[scipy-0.19.1] Skipping scipy as it is not installed.
[scipy-0.19.1] Skipping scipy as it is not installed.
[scipy-0.19.1] Skipping scipy as it is not installed.
[scipy-0.19.1] Skipping scipy as it is not installed.
[scipy-0.19.1] Skipping scipy as it is not installed.
[scipy-0.19.1] Skipping scipy as it is not installed.
[scipy-0.19.1] Skipping scipy as it is not installed.
[scipy-0.19.1] Skipping scipy as it is not installed.
[scipy-0.19.1] Skipping scipy as it is not installed.
[scipy-0.19.1] Skipping scipy as it is not installed.
[scipy-0.19.1] Skipping scipy as it is not installed.
[scipy-0.19.1] Skipping scipy as it is not installed.
[scipy-0.19.1] Skipping scipy as it is not installed.
[scipy-0.19.1] Skipping scipy as it is not installed.
[scipy-0.19.1] Skipping scipy as it is not installed.

being repeated for ever.  I have left that going in case someone wants to
see any log files.

On 16 May 2018 at 08:44, Henri Girard  wrote:

> Bionic 18.04 AMD x8 64 bits, compile perfect. I started from fresh git
> sage because upgrading from 8.2 failed. It couldn't find many libs. By the
> way I found my crash problem while compiling : I had to config the bios
> allowing warmer processing.
>
> Le 15/05/2018 à 21:24, Sébastien Labbé a écrit :
>
> On Ubuntu 16.04, the command `./sage -t -p --all --long
> --optional=sage,optional,external` finishes with:
>
> --
> sage -t --long src/sage/coding/code_constructions.py  # 1 doctest failed
> --
> Total time for all tests: 1821.3 seconds
> cpu time: 11639.5 seconds
> cumulative wall time: 14059.4 seconds
> External software detected for doctesting: gurobi,latex
> Traceback (most recent call last):
>   File "/home/slabbe/GitBox/sage/src/bin/sage-runtests", line 127, in
> 
> err = DC.run()
>   File "/home/slabbe/GitBox/sage/local/lib/python2.7/site-
> packages/sage/doctest/control.py", line 1176, in run
> + ','.join(available_software.seen()))
>   File "/home/slabbe/GitBox/sage/local/lib/python2.7/site-
> packages/sage/doctest/control.py", line 583, in log
> self.logger.write(s + end)
>   File "/home/slabbe/GitBox/sage/local/lib/python2.7/site-
> packages/sage/doctest/control.py", line 250, in write
> f.write(x)
> ValueError: I/O operation on closed file
>
>
> The code_construction error is copied below (I can not reproduce it) :
>
>
>
> sage -t --long src/sage/coding/code_constructions.py
> **
> File "src/sage/coding/code_constructions.py", line 624, in
> sage.coding.code_constructions.QuadraticResidueCodeOddPair
> Failed example:
> codes.QuadraticResidueCodeOddPair(17, GF(13))
> Exception raised:
> Traceback (most recent call last):
>   File "/home/slabbe/GitBox/sage/local/lib/python2.7/site-
> packages/sage/doctest/forker.py", line 562, in _run
> self.compile_and_execute(example, compiler, test.globs)
>   File "/home/slabbe/GitBox/sage/local/lib/python2.7/site-
> packages/sage/doctest/forker.py", line 972, in compile_and_execute
> exec(compiled, globs)
>   File " QuadraticResidueCodeOddPair[0]>", line 1, in 
> codes.QuadraticResidueCodeOddPair(Integer(17), GF(Integer(13)))
>   File "/home/slabbe/GitBox/sage/local/lib/python2.7/site-
> packages/sage/coding/code_constructions.py", line 666, in Quadratic
> ResidueCodeOddPair
> return DuadicCodeOddPair(F,Q,N)
>   File "/home/slabbe/GitBox/sage/local/lib/python2.7/site-
> packages/sage/coding/code_constructions.py", line 425, in DuadicCod
> eOddPair
> gg1 = P2(coeffs1)
>   File "sage/structure/parent.pyx", line 920, in
> sage.structure.parent.Parent.__call__ (build/cythonized/sage/
> structure/paren
> t.c:9734)
> return mor._call_(x)
>   File "sage/structure/coerce_maps.pyx", line 145, in
> sage.structure.coerce_maps.DefaultConvertMap_unique._call_ (build/cytho
> nized/sage/structure/coerce_maps.c:4555)
> raise
>   File "sage/structure/coerce_maps.pyx", line 140, in
> sage.structure.coerce_maps.DefaultConvertMap_unique._call_ (build/cytho
> nized/sage/structure/coerce_maps.c:4423)
> return 

Re: [sage-release] Re: Sage 8.3.beta1 released

[Henri Girard]

Bionic 18.04 AMD x8 64 bits, compile perfect. I started from fresh git 
sage because upgrading from 8.2 failed. It couldn't find many libs. By 
the way I found my crash problem while compiling : I had to config the 
bios allowing warmer processing.



Le 15/05/2018 à 21:24, Sébastien Labbé a écrit :
On Ubuntu 16.04, the command `./sage -t -p --all --long 
--optional=sage,optional,external` finishes with:


--
sage -t --long src/sage/coding/code_constructions.py  # 1 doctest failed
--
Total time for all tests: 1821.3 seconds
    cpu time: 11639.5 seconds
    cumulative wall time: 14059.4 seconds
External software detected for doctesting: gurobi,latex
Traceback (most recent call last):
  File "/home/slabbe/GitBox/sage/src/bin/sage-runtests", line 127, in 


    err = DC.run()
  File 
"/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/doctest/control.py", 
line 1176, in run

    + ','.join(available_software.seen()))
  File 
"/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/doctest/control.py", 
line 583, in log

    self.logger.write(s + end)
  File 
"/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/doctest/control.py", 
line 250, in write

    f.write(x)
ValueError: I/O operation on closed file


The code_construction error is copied below (I can not reproduce it) :



sage -t --long src/sage/coding/code_constructions.py
**
File "src/sage/coding/code_constructions.py", line 624, in 
sage.coding.code_constructions.QuadraticResidueCodeOddPair

Failed example:
    codes.QuadraticResidueCodeOddPair(17, GF(13))
Exception raised:
    Traceback (most recent call last):
  File 
"/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/doctest/forker.py", 
line 562, in _run

    self.compile_and_execute(example, compiler, test.globs)
  File 
"/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/doctest/forker.py", 
line 972, in compile_and_execute

    exec(compiled, globs)
  File "sage.coding.code_constructions.QuadraticResidueCodeOddPair[0]>", line 
1, in 

    codes.QuadraticResidueCodeOddPair(Integer(17), GF(Integer(13)))
  File 
"/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/coding/code_constructions.py", 
line 666, in Quadratic

ResidueCodeOddPair
    return DuadicCodeOddPair(F,Q,N)
  File 
"/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/coding/code_constructions.py", 
line 425, in DuadicCod

eOddPair
    gg1 = P2(coeffs1)
  File "sage/structure/parent.pyx", line 920, in 
sage.structure.parent.Parent.__call__ 
(build/cythonized/sage/structure/paren

t.c:9734)
    return mor._call_(x)
  File "sage/structure/coerce_maps.pyx", line 145, in 
sage.structure.coerce_maps.DefaultConvertMap_unique._call_ (build/cytho

nized/sage/structure/coerce_maps.c:4555)
    raise
  File "sage/structure/coerce_maps.pyx", line 140, in 
sage.structure.coerce_maps.DefaultConvertMap_unique._call_ (build/cytho

nized/sage/structure/coerce_maps.c:4423)
    return C._element_constructor(x)
  File 
"/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/rings/polynomial/polynomial_ring.py", 
line 404, in _e

lement_constructor_
    return C(self, x, check=check, is_gen=False, construct=construct)
  File "sage/rings/polynomial/polynomial_zmod_flint.pyx", line 
100, in sage.rings.polynomial.polynomial_zmod_flint.Polynomial
_zmod_flint.__init__ 
(build/cythonized/sage/rings/polynomial/polynomial_zmod_flint.cpp:14358)

    lst = [k(i) for i in x]
  File "sage/structure/parent.pyx", line 920, in 
sage.structure.parent.Parent.__call__ 
(build/cythonized/sage/structure/paren

t.c:9734)
    return mor._call_(x)
  File "sage/rings/finite_rings/hom_prime_finite_field.pyx", line 
46, in sage.rings.finite_rings.hom_prime_finite_field.Secti
onFiniteFieldHomomorphism_prime._call_ 
(build/cythonized/sage/rings/finite_rings/hom_prime_finite_field.c:3457)
    raise ValueError("%s is not in the image of %s" % (x, 
self._inverse))
    ValueError: 3*z^3 + 2*z^2 + 8*z + 1 is not in the image of (map 
internal to coercion system -- copy before use)

    Ring morphism:
  From: Finite Field of size 13
  To:   Finite Field in z of size 13^4
**
1 item had failures:
   1 of  13 in sage.coding.code_constructions.QuadraticResidueCodeOddPair
    [146 tests, 1 failure, 2.56 s]

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[sage-release] Re: Sage 8.3.beta1 released

[Samuel Lelievre]

Under macOS 10.10.5, after downloading the cysignals patch

https://github.com/sagemath/cysignals
/commit/daef81e2fc111378ccc58b3f572eb18c70753a30.patch

into

build/pkgs/cysignals/patches

both the build+docbuild of Python2-based Sage
and the build+nodocbuild of Python3-based Sage
were successful. I have not run the tests.

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[sage-release] Re: Sage 8.3.beta1 released

[Sébastien Labbé]

On Ubuntu 16.04, the command `./sage -t -p --all --long 
--optional=sage,optional,external` finishes with:

--
sage -t --long src/sage/coding/code_constructions.py  # 1 doctest failed
--
Total time for all tests: 1821.3 seconds
cpu time: 11639.5 seconds
cumulative wall time: 14059.4 seconds
External software detected for doctesting: gurobi,latex
Traceback (most recent call last):
  File "/home/slabbe/GitBox/sage/src/bin/sage-runtests", line 127, in 

err = DC.run()
  File 
"/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/doctest/control.py",
 
line 1176, in run
+ ','.join(available_software.seen()))
  File 
"/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/doctest/control.py",
 
line 583, in log
self.logger.write(s + end)
  File 
"/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/doctest/control.py",
 
line 250, in write
f.write(x)
ValueError: I/O operation on closed file


The code_construction error is copied below (I can not reproduce it) :



sage -t --long src/sage/coding/code_constructions.py
**
File "src/sage/coding/code_constructions.py", line 624, in 
sage.coding.code_constructions.QuadraticResidueCodeOddPair
Failed example:
codes.QuadraticResidueCodeOddPair(17, GF(13))
Exception raised:
Traceback (most recent call last):
  File 
"/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/doctest/forker.py",
 
line 562, in _run
self.compile_and_execute(example, compiler, test.globs)
  File 
"/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/doctest/forker.py",
 
line 972, in compile_and_execute
exec(compiled, globs)
  File "", line 1, in 

codes.QuadraticResidueCodeOddPair(Integer(17), GF(Integer(13)))
  File 
"/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/coding/code_constructions.py",
 
line 666, in Quadratic
ResidueCodeOddPair
return DuadicCodeOddPair(F,Q,N)
  File 
"/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/coding/code_constructions.py",
 
line 425, in DuadicCod
eOddPair
gg1 = P2(coeffs1)
  File "sage/structure/parent.pyx", line 920, in 
sage.structure.parent.Parent.__call__ (build/cythonized/sage/structure/paren
t.c:9734)
return mor._call_(x)
  File "sage/structure/coerce_maps.pyx", line 145, in 
sage.structure.coerce_maps.DefaultConvertMap_unique._call_ (build/cytho
nized/sage/structure/coerce_maps.c:4555)
raise
  File "sage/structure/coerce_maps.pyx", line 140, in 
sage.structure.coerce_maps.DefaultConvertMap_unique._call_ (build/cytho
nized/sage/structure/coerce_maps.c:4423)
return C._element_constructor(x)
  File 
"/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/rings/polynomial/polynomial_ring.py",
 
line 404, in _e
lement_constructor_
return C(self, x, check=check, is_gen=False, construct=construct)
  File "sage/rings/polynomial/polynomial_zmod_flint.pyx", line 100, in 
sage.rings.polynomial.polynomial_zmod_flint.Polynomial
_zmod_flint.__init__ 
(build/cythonized/sage/rings/polynomial/polynomial_zmod_flint.cpp:14358)
lst = [k(i) for i in x]
  File "sage/structure/parent.pyx", line 920, in 
sage.structure.parent.Parent.__call__ (build/cythonized/sage/structure/paren
t.c:9734)
return mor._call_(x)
  File "sage/rings/finite_rings/hom_prime_finite_field.pyx", line 46, 
in sage.rings.finite_rings.hom_prime_finite_field.Secti
onFiniteFieldHomomorphism_prime._call_ 
(build/cythonized/sage/rings/finite_rings/hom_prime_finite_field.c:3457)
raise ValueError("%s is not in the image of %s" % (x, 
self._inverse))
ValueError: 3*z^3 + 2*z^2 + 8*z + 1 is not in the image of (map 
internal to coercion system -- copy before use)
Ring morphism:
  From: Finite Field of size 13
  To:   Finite Field in z of size 13^4
**
1 item had failures:
   1 of  13 in sage.coding.code_constructions.QuadraticResidueCodeOddPair
[146 tests, 1 failure, 2.56 s]

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[sage-release] Re: Sage 8.3.beta1 released

[Dima Pasechnik]

this is already fixed in https://trac.sagemath.org/ticket/25323
please review :-)

On Tuesday, May 15, 2018 at 4:44:03 PM UTC+1, John H Palmieri wrote:
>
> For me on OS X, I get the same failures as in earlier versions (which may 
> be related somehow to my system). But if I then do "sage -i database_gap" 
> and run tests again, I get failures in permgroup.py and features/gap.py. 
> For example:
>
> sage -t --long src/sage/features/gap.py
> **
> File "src/sage/features/gap.py", line 41, in 
> sage.features.gap.GapPackage._is_present
> Failed example:
> GapPackage("prim", spkg="database_gap").is_present()  # optional: 
> database_gap
> Expected:
> FeatureTestResult('GAP package prim', True)
> Got:
> FeatureTestResult('GAP package prim', False)
> **
> 1 item had failures:
>1 of   3 in sage.features.gap.GapPackage._is_present
> [12 tests, 1 failure, 5.81 s]
> --
> sage -t --long src/sage/features/gap.py  # 1 doctest failed
> --
>
> Emmanuel, is this what you are seeing?
>
> -- 
> John
>
>
>
> On Tuesday, May 15, 2018 at 5:46:00 AM UTC-7, Emmanuel Charpentier wrote:
>>
>> FWIW : on Debian testing running on Core i7 + 16 GB RAM, same results as 
>> for 8.3.beta0, i. e. one transient and two permanent errors (the same as 
>> before) :
>>
>> --
>> sage -t --long src/sage/rings/padics/padic_lattice_element.py  # Timed out
>> sage -t --long src/sage/groups/perm_gps/permgroup.py  # 1 doctest failed
>> sage -t --long src/sage/features/gap.py  # 1 doctest failed
>> --
>>
>> HTH,
>>
>> --
>> Emmanuel Charpentier
>>
>>
>> Le lundi 14 mai 2018 20:10:54 UTC+2, Volker Braun a écrit :
>>>
>>> As always, you can get the latest beta version from the "develop" git 
>>> branch. Alternatively, the self-contained source tarball is at 
>>> http://www.sagemath.org/download-latest.html
>>>
>>> 6fc1e20c66 (tag: 8.3.beta1) Updated SageMath version to 8.3.beta1
>>> 8c327b9901 Trac #25258: Gurobi breaks lots of doctests in make ptestlong
>>> 47a7327e12 Trac #25248: py3: fix sage.parallel.map_reduce
>>> 7feb4d298c Trac #25244: LatticePoset: Add is_interval_dismantlable
>>> 3e6075d57b Trac #25236: Deprecate various functions from old coercion 
>>> model
>>> c4b415fa9f Trac #25235: q-Stirling numbers of the second kind
>>> 2c90815686 Trac #25224: Mismatch in the definition of dilog() between 
>>> fricas and sympy
>>> 3ab97b15d3 Trac #25223: Cleaning of the usage of BFS
>>> bf0beabf6a Trac #25220: fix definite fricas integration
>>> 88e1ed6d0e Trac #25216: py3: fix bytes handling bugs in sage.plot.animate
>>> deae517486 Trac #25211: code should not depend ordering of codegrees
>>> eb2f271af2 Trac #25203: Speed up FiniteField.zeta()
>>> 22b8be8a05 Trac #25201: Use super() in MatrixSpace.__getitem__
>>> 9a7f40d097 Trac #25200: Incorrect long element for signed permutations
>>> eba77d3f14 Trac #25195: py3: fix segfault in element wrapper on Python 3
>>> f5527d2184 Trac #25192: primitivity test for integral matrices
>>> b3b4f75048 Trac #25186: Use ZZ.random_element for random_prime
>>> 7e6c6ab9e5 Trac #25182: coherent output type for polynomial.degree()
>>> 6aafae Trac #25174: conversion of I to fricas is wrong
>>> 6a34919efb Trac #25169: py3: fixing print in sage-starts script
>>> 80d4a17edc Trac #25161: Sphinx build hangs when a BaseException occurs
>>> 6f130ae999 Trac #25146: Cleanup of AbstractPartitionDiagram
>>> 41c9fffbe1 Trac #24966: package primecount 4.3
>>> 72980a10a1 Trac #24890: Tensor product of lattices
>>> 951fa49129 Trac #24460: py3: fixes to sage.libs.gap
>>> e5af4884cc Trac #15508: Implement Fock space
>>> 4756f04cbe Trac #25335: Missing imports in 
>>> src/sage/geometry/polyhedron/base.py
>>> faad356119 Trac #25133: Implement WQSym
>>> b593af3371 Trac #25132: Define the class of SuperPartitions
>>> c1a36a02ee Trac #25131: FQSym: add G basis
>>> ad72cec5b8 Trac #25128: Have py_scalar_to_element convert gmpy2 numbers
>>> 81f7d7a341 Trac #25121: fix edge color format in graphviz_string
>>> 8821bb1454 Trac #25120: dot2tex edge coloring is broken
>>> 80fa1be913 Trac #25117: some pyflakes cleanup for unused variables
>>> fd8c5d4676 Trac #25112: perl_term_readline_gnu: Upgrade to 1.35 and 
>>> patch away ncurses problem
>>> bf6cbafbed Trac #25109: Upgrade cmake to 3.11.0
>>> 07ce7c88bf Trac #25105: ell_number_field.py takes a long time to test
>>> bb996e69ec Trac #25098: Fix LaTeX usage in Rings documentation
>>> eecf07e8c7 Trac #25095: polygon3d ignores the "alpha" (and equivalent 
>>> "opacity") argument
>>> 15b5aa2b60 Trac #25081: The polar of a polyhedron should carry the 
>>> backend used.
>>> 

[sage-release] Re: Sage 8.3.beta1 released

[Dima Pasechnik]

On Tuesday, May 15, 2018 at 4:44:03 PM UTC+1, John H Palmieri wrote:
>
> For me on OS X, I get the same failures as in earlier versions (which may 
> be related somehow to my system). But if I then do "sage -i database_gap" 
> and run tests again, I get failures in permgroup.py and features/gap.py. 
> For example:
>
> sage -t --long src/sage/features/gap.py
> **
> File "src/sage/features/gap.py", line 41, in 
> sage.features.gap.GapPackage._is_present
> Failed example:
> GapPackage("prim", spkg="database_gap").is_present()  # optional: 
> database_gap
> Expected:
> FeatureTestResult('GAP package prim', True)
> Got:
> FeatureTestResult('GAP package prim', False)
> **
> 1 item had failures:
>1 of   3 in sage.features.gap.GapPackage._is_present
> [12 tests, 1 failure, 5.81 s]
> --
> sage -t --long src/sage/features/gap.py  # 1 doctest failed
> --
>
> Emmanuel, is this what you are seeing?
>
> -- 
> John
>
>
>
> On Tuesday, May 15, 2018 at 5:46:00 AM UTC-7, Emmanuel Charpentier wrote:
>>
>> FWIW : on Debian testing running on Core i7 + 16 GB RAM, same results as 
>> for 8.3.beta0, i. e. one transient and two permanent errors (the same as 
>> before) :
>>
>> --
>> sage -t --long src/sage/rings/padics/padic_lattice_element.py  # Timed out
>> sage -t --long src/sage/groups/perm_gps/permgroup.py  # 1 doctest failed
>> sage -t --long src/sage/features/gap.py  # 1 doctest failed
>> --
>>
>> HTH,
>>
>> --
>> Emmanuel Charpentier
>>
>>
>> Le lundi 14 mai 2018 20:10:54 UTC+2, Volker Braun a écrit :
>>>
>>> As always, you can get the latest beta version from the "develop" git 
>>> branch. Alternatively, the self-contained source tarball is at 
>>> http://www.sagemath.org/download-latest.html
>>>
>>> 6fc1e20c66 (tag: 8.3.beta1) Updated SageMath version to 8.3.beta1
>>> 8c327b9901 Trac #25258: Gurobi breaks lots of doctests in make ptestlong
>>> 47a7327e12 Trac #25248: py3: fix sage.parallel.map_reduce
>>> 7feb4d298c Trac #25244: LatticePoset: Add is_interval_dismantlable
>>> 3e6075d57b Trac #25236: Deprecate various functions from old coercion 
>>> model
>>> c4b415fa9f Trac #25235: q-Stirling numbers of the second kind
>>> 2c90815686 Trac #25224: Mismatch in the definition of dilog() between 
>>> fricas and sympy
>>> 3ab97b15d3 Trac #25223: Cleaning of the usage of BFS
>>> bf0beabf6a Trac #25220: fix definite fricas integration
>>> 88e1ed6d0e Trac #25216: py3: fix bytes handling bugs in sage.plot.animate
>>> deae517486 Trac #25211: code should not depend ordering of codegrees
>>> eb2f271af2 Trac #25203: Speed up FiniteField.zeta()
>>> 22b8be8a05 Trac #25201: Use super() in MatrixSpace.__getitem__
>>> 9a7f40d097 Trac #25200: Incorrect long element for signed permutations
>>> eba77d3f14 Trac #25195: py3: fix segfault in element wrapper on Python 3
>>> f5527d2184 Trac #25192: primitivity test for integral matrices
>>> b3b4f75048 Trac #25186: Use ZZ.random_element for random_prime
>>> 7e6c6ab9e5 Trac #25182: coherent output type for polynomial.degree()
>>> 6aafae Trac #25174: conversion of I to fricas is wrong
>>> 6a34919efb Trac #25169: py3: fixing print in sage-starts script
>>> 80d4a17edc Trac #25161: Sphinx build hangs when a BaseException occurs
>>> 6f130ae999 Trac #25146: Cleanup of AbstractPartitionDiagram
>>> 41c9fffbe1 Trac #24966: package primecount 4.3
>>> 72980a10a1 Trac #24890: Tensor product of lattices
>>> 951fa49129 Trac #24460: py3: fixes to sage.libs.gap
>>> e5af4884cc Trac #15508: Implement Fock space
>>> 4756f04cbe Trac #25335: Missing imports in 
>>> src/sage/geometry/polyhedron/base.py
>>> faad356119 Trac #25133: Implement WQSym
>>> b593af3371 Trac #25132: Define the class of SuperPartitions
>>> c1a36a02ee Trac #25131: FQSym: add G basis
>>> ad72cec5b8 Trac #25128: Have py_scalar_to_element convert gmpy2 numbers
>>> 81f7d7a341 Trac #25121: fix edge color format in graphviz_string
>>> 8821bb1454 Trac #25120: dot2tex edge coloring is broken
>>> 80fa1be913 Trac #25117: some pyflakes cleanup for unused variables
>>> fd8c5d4676 Trac #25112: perl_term_readline_gnu: Upgrade to 1.35 and 
>>> patch away ncurses problem
>>> bf6cbafbed Trac #25109: Upgrade cmake to 3.11.0
>>> 07ce7c88bf Trac #25105: ell_number_field.py takes a long time to test
>>> bb996e69ec Trac #25098: Fix LaTeX usage in Rings documentation
>>> eecf07e8c7 Trac #25095: polygon3d ignores the "alpha" (and equivalent 
>>> "opacity") argument
>>> 15b5aa2b60 Trac #25081: The polar of a polyhedron should carry the 
>>> backend used.
>>> 62a893aba3 Trac #25080: code for Cartesian factorization of posets
>>> 89ec1fb5c2 Trac 

[sage-release] Re: Sage 8.3.beta1 released

[John H Palmieri]

For me on OS X, I get the same failures as in earlier versions (which may 
be related somehow to my system). But if I then do "sage -i database_gap" 
and run tests again, I get failures in permgroup.py and features/gap.py. 
For example:

sage -t --long src/sage/features/gap.py
**
File "src/sage/features/gap.py", line 41, in 
sage.features.gap.GapPackage._is_present
Failed example:
GapPackage("prim", spkg="database_gap").is_present()  # optional: 
database_gap
Expected:
FeatureTestResult('GAP package prim', True)
Got:
FeatureTestResult('GAP package prim', False)
**
1 item had failures:
   1 of   3 in sage.features.gap.GapPackage._is_present
[12 tests, 1 failure, 5.81 s]
--
sage -t --long src/sage/features/gap.py  # 1 doctest failed
--

Emmanuel, is this what you are seeing?

-- 
John



On Tuesday, May 15, 2018 at 5:46:00 AM UTC-7, Emmanuel Charpentier wrote:
>
> FWIW : on Debian testing running on Core i7 + 16 GB RAM, same results as 
> for 8.3.beta0, i. e. one transient and two permanent errors (the same as 
> before) :
>
> --
> sage -t --long src/sage/rings/padics/padic_lattice_element.py  # Timed out
> sage -t --long src/sage/groups/perm_gps/permgroup.py  # 1 doctest failed
> sage -t --long src/sage/features/gap.py  # 1 doctest failed
> --
>
> HTH,
>
> --
> Emmanuel Charpentier
>
>
> Le lundi 14 mai 2018 20:10:54 UTC+2, Volker Braun a écrit :
>>
>> As always, you can get the latest beta version from the "develop" git 
>> branch. Alternatively, the self-contained source tarball is at 
>> http://www.sagemath.org/download-latest.html
>>
>> 6fc1e20c66 (tag: 8.3.beta1) Updated SageMath version to 8.3.beta1
>> 8c327b9901 Trac #25258: Gurobi breaks lots of doctests in make ptestlong
>> 47a7327e12 Trac #25248: py3: fix sage.parallel.map_reduce
>> 7feb4d298c Trac #25244: LatticePoset: Add is_interval_dismantlable
>> 3e6075d57b Trac #25236: Deprecate various functions from old coercion 
>> model
>> c4b415fa9f Trac #25235: q-Stirling numbers of the second kind
>> 2c90815686 Trac #25224: Mismatch in the definition of dilog() between 
>> fricas and sympy
>> 3ab97b15d3 Trac #25223: Cleaning of the usage of BFS
>> bf0beabf6a Trac #25220: fix definite fricas integration
>> 88e1ed6d0e Trac #25216: py3: fix bytes handling bugs in sage.plot.animate
>> deae517486 Trac #25211: code should not depend ordering of codegrees
>> eb2f271af2 Trac #25203: Speed up FiniteField.zeta()
>> 22b8be8a05 Trac #25201: Use super() in MatrixSpace.__getitem__
>> 9a7f40d097 Trac #25200: Incorrect long element for signed permutations
>> eba77d3f14 Trac #25195: py3: fix segfault in element wrapper on Python 3
>> f5527d2184 Trac #25192: primitivity test for integral matrices
>> b3b4f75048 Trac #25186: Use ZZ.random_element for random_prime
>> 7e6c6ab9e5 Trac #25182: coherent output type for polynomial.degree()
>> 6aafae Trac #25174: conversion of I to fricas is wrong
>> 6a34919efb Trac #25169: py3: fixing print in sage-starts script
>> 80d4a17edc Trac #25161: Sphinx build hangs when a BaseException occurs
>> 6f130ae999 Trac #25146: Cleanup of AbstractPartitionDiagram
>> 41c9fffbe1 Trac #24966: package primecount 4.3
>> 72980a10a1 Trac #24890: Tensor product of lattices
>> 951fa49129 Trac #24460: py3: fixes to sage.libs.gap
>> e5af4884cc Trac #15508: Implement Fock space
>> 4756f04cbe Trac #25335: Missing imports in 
>> src/sage/geometry/polyhedron/base.py
>> faad356119 Trac #25133: Implement WQSym
>> b593af3371 Trac #25132: Define the class of SuperPartitions
>> c1a36a02ee Trac #25131: FQSym: add G basis
>> ad72cec5b8 Trac #25128: Have py_scalar_to_element convert gmpy2 numbers
>> 81f7d7a341 Trac #25121: fix edge color format in graphviz_string
>> 8821bb1454 Trac #25120: dot2tex edge coloring is broken
>> 80fa1be913 Trac #25117: some pyflakes cleanup for unused variables
>> fd8c5d4676 Trac #25112: perl_term_readline_gnu: Upgrade to 1.35 and patch 
>> away ncurses problem
>> bf6cbafbed Trac #25109: Upgrade cmake to 3.11.0
>> 07ce7c88bf Trac #25105: ell_number_field.py takes a long time to test
>> bb996e69ec Trac #25098: Fix LaTeX usage in Rings documentation
>> eecf07e8c7 Trac #25095: polygon3d ignores the "alpha" (and equivalent 
>> "opacity") argument
>> 15b5aa2b60 Trac #25081: The polar of a polyhedron should carry the 
>> backend used.
>> 62a893aba3 Trac #25080: code for Cartesian factorization of posets
>> 89ec1fb5c2 Trac #25075: pyflakes cleanup in combinat
>> 329c579bac Trac #25074: upgrade to ipywidgets 7.2.0
>> a5122d141e Trac #25067: Implement quantum group q-numbers
>> 054122ae77 Trac #25065: partition input is 

Re: [sage-release] Re: Sage 8.3.beta1 released

[Erik Bray]

Thanks for the release.

On Ubuntu 14.04 I get LOTS of test timeouts that I didn't get
previously.  It's possible though that the system is just uder heavy
load, but even re-running the tests with --failed keeps giving me
timeouts for some modules.  So I'm concerned about a real performance
regression somewhere.  I'm running ./sage -t -a --failed yet again,
but from my last run I got:

sage -t src/sage/libs/gap/all_documented_functions.py  # Timed out
sage -t src/sage/libs/gap/assigned_names.py  # Timed out
sage -t src/sage/manifolds/differentiable/affine_connection.py  # Timed out
sage -t src/sage/manifolds/differentiable/euclidean.py  # Timed out
sage -t src/sage/manifolds/differentiable/metric.py  # Timed out
sage -t src/sage/manifolds/differentiable/multivectorfield.py  # Timed out
sage -t src/sage/manifolds/differentiable/tensorfield.py  # Timed out
sage -t src/sage/plot/plot.py  # Timed out
sage -t src/sage/rings/padics/padic_base_leaves.py  # Timed out
sage -t src/sage/rings/padics/padic_lattice_element.py  # Timed out
(and interrupt failed)


Will try 16.04 (the current base for my Docker images) and 18.04 next.

On Tue, May 15, 2018 at 2:46 PM, Emmanuel Charpentier
 wrote:
> FWIW : on Debian testing running on Core i7 + 16 GB RAM, same results as for
> 8.3.beta0, i. e. one transient and two permanent errors (the same as before)
> :
>
> --
> sage -t --long src/sage/rings/padics/padic_lattice_element.py  # Timed out
> sage -t --long src/sage/groups/perm_gps/permgroup.py  # 1 doctest failed
> sage -t --long src/sage/features/gap.py  # 1 doctest failed
> --
>
> HTH,
>
> --
> Emmanuel Charpentier
>
>
> Le lundi 14 mai 2018 20:10:54 UTC+2, Volker Braun a écrit :
>>
>> As always, you can get the latest beta version from the "develop" git
>> branch. Alternatively, the self-contained source tarball is at
>> http://www.sagemath.org/download-latest.html
>>
>> 6fc1e20c66 (tag: 8.3.beta1) Updated SageMath version to 8.3.beta1
>> 8c327b9901 Trac #25258: Gurobi breaks lots of doctests in make ptestlong
>> 47a7327e12 Trac #25248: py3: fix sage.parallel.map_reduce
>> 7feb4d298c Trac #25244: LatticePoset: Add is_interval_dismantlable
>> 3e6075d57b Trac #25236: Deprecate various functions from old coercion
>> model
>> c4b415fa9f Trac #25235: q-Stirling numbers of the second kind
>> 2c90815686 Trac #25224: Mismatch in the definition of dilog() between
>> fricas and sympy
>> 3ab97b15d3 Trac #25223: Cleaning of the usage of BFS
>> bf0beabf6a Trac #25220: fix definite fricas integration
>> 88e1ed6d0e Trac #25216: py3: fix bytes handling bugs in sage.plot.animate
>> deae517486 Trac #25211: code should not depend ordering of codegrees
>> eb2f271af2 Trac #25203: Speed up FiniteField.zeta()
>> 22b8be8a05 Trac #25201: Use super() in MatrixSpace.__getitem__
>> 9a7f40d097 Trac #25200: Incorrect long element for signed permutations
>> eba77d3f14 Trac #25195: py3: fix segfault in element wrapper on Python 3
>> f5527d2184 Trac #25192: primitivity test for integral matrices
>> b3b4f75048 Trac #25186: Use ZZ.random_element for random_prime
>> 7e6c6ab9e5 Trac #25182: coherent output type for polynomial.degree()
>> 6aafae Trac #25174: conversion of I to fricas is wrong
>> 6a34919efb Trac #25169: py3: fixing print in sage-starts script
>> 80d4a17edc Trac #25161: Sphinx build hangs when a BaseException occurs
>> 6f130ae999 Trac #25146: Cleanup of AbstractPartitionDiagram
>> 41c9fffbe1 Trac #24966: package primecount 4.3
>> 72980a10a1 Trac #24890: Tensor product of lattices
>> 951fa49129 Trac #24460: py3: fixes to sage.libs.gap
>> e5af4884cc Trac #15508: Implement Fock space
>> 4756f04cbe Trac #25335: Missing imports in
>> src/sage/geometry/polyhedron/base.py
>> faad356119 Trac #25133: Implement WQSym
>> b593af3371 Trac #25132: Define the class of SuperPartitions
>> c1a36a02ee Trac #25131: FQSym: add G basis
>> ad72cec5b8 Trac #25128: Have py_scalar_to_element convert gmpy2 numbers
>> 81f7d7a341 Trac #25121: fix edge color format in graphviz_string
>> 8821bb1454 Trac #25120: dot2tex edge coloring is broken
>> 80fa1be913 Trac #25117: some pyflakes cleanup for unused variables
>> fd8c5d4676 Trac #25112: perl_term_readline_gnu: Upgrade to 1.35 and patch
>> away ncurses problem
>> bf6cbafbed Trac #25109: Upgrade cmake to 3.11.0
>> 07ce7c88bf Trac #25105: ell_number_field.py takes a long time to test
>> bb996e69ec Trac #25098: Fix LaTeX usage in Rings documentation
>> eecf07e8c7 Trac #25095: polygon3d ignores the "alpha" (and equivalent
>> "opacity") argument
>> 15b5aa2b60 Trac #25081: The polar of a polyhedron should carry the backend
>> used.
>> 62a893aba3 Trac #25080: code for Cartesian factorization of posets
>> 89ec1fb5c2 Trac #25075: pyflakes cleanup in combinat
>> 329c579bac Trac #25074: upgrade to ipywidgets 7.2.0
>> a5122d141e Trac #25067: Implement quantum group 

[sage-release] Re: Sage 8.3.beta1 released

[Emmanuel Charpentier]

FWIW : on Debian testing running on Core i7 + 16 GB RAM, same results as 
for 8.3.beta0, i. e. one transient and two permanent errors (the same as 
before) :

--
sage -t --long src/sage/rings/padics/padic_lattice_element.py  # Timed out
sage -t --long src/sage/groups/perm_gps/permgroup.py  # 1 doctest failed
sage -t --long src/sage/features/gap.py  # 1 doctest failed
--

HTH,

--
Emmanuel Charpentier


Le lundi 14 mai 2018 20:10:54 UTC+2, Volker Braun a écrit :
>
> As always, you can get the latest beta version from the "develop" git 
> branch. Alternatively, the self-contained source tarball is at 
> http://www.sagemath.org/download-latest.html
>
> 6fc1e20c66 (tag: 8.3.beta1) Updated SageMath version to 8.3.beta1
> 8c327b9901 Trac #25258: Gurobi breaks lots of doctests in make ptestlong
> 47a7327e12 Trac #25248: py3: fix sage.parallel.map_reduce
> 7feb4d298c Trac #25244: LatticePoset: Add is_interval_dismantlable
> 3e6075d57b Trac #25236: Deprecate various functions from old coercion model
> c4b415fa9f Trac #25235: q-Stirling numbers of the second kind
> 2c90815686 Trac #25224: Mismatch in the definition of dilog() between 
> fricas and sympy
> 3ab97b15d3 Trac #25223: Cleaning of the usage of BFS
> bf0beabf6a Trac #25220: fix definite fricas integration
> 88e1ed6d0e Trac #25216: py3: fix bytes handling bugs in sage.plot.animate
> deae517486 Trac #25211: code should not depend ordering of codegrees
> eb2f271af2 Trac #25203: Speed up FiniteField.zeta()
> 22b8be8a05 Trac #25201: Use super() in MatrixSpace.__getitem__
> 9a7f40d097 Trac #25200: Incorrect long element for signed permutations
> eba77d3f14 Trac #25195: py3: fix segfault in element wrapper on Python 3
> f5527d2184 Trac #25192: primitivity test for integral matrices
> b3b4f75048 Trac #25186: Use ZZ.random_element for random_prime
> 7e6c6ab9e5 Trac #25182: coherent output type for polynomial.degree()
> 6aafae Trac #25174: conversion of I to fricas is wrong
> 6a34919efb Trac #25169: py3: fixing print in sage-starts script
> 80d4a17edc Trac #25161: Sphinx build hangs when a BaseException occurs
> 6f130ae999 Trac #25146: Cleanup of AbstractPartitionDiagram
> 41c9fffbe1 Trac #24966: package primecount 4.3
> 72980a10a1 Trac #24890: Tensor product of lattices
> 951fa49129 Trac #24460: py3: fixes to sage.libs.gap
> e5af4884cc Trac #15508: Implement Fock space
> 4756f04cbe Trac #25335: Missing imports in 
> src/sage/geometry/polyhedron/base.py
> faad356119 Trac #25133: Implement WQSym
> b593af3371 Trac #25132: Define the class of SuperPartitions
> c1a36a02ee Trac #25131: FQSym: add G basis
> ad72cec5b8 Trac #25128: Have py_scalar_to_element convert gmpy2 numbers
> 81f7d7a341 Trac #25121: fix edge color format in graphviz_string
> 8821bb1454 Trac #25120: dot2tex edge coloring is broken
> 80fa1be913 Trac #25117: some pyflakes cleanup for unused variables
> fd8c5d4676 Trac #25112: perl_term_readline_gnu: Upgrade to 1.35 and patch 
> away ncurses problem
> bf6cbafbed Trac #25109: Upgrade cmake to 3.11.0
> 07ce7c88bf Trac #25105: ell_number_field.py takes a long time to test
> bb996e69ec Trac #25098: Fix LaTeX usage in Rings documentation
> eecf07e8c7 Trac #25095: polygon3d ignores the "alpha" (and equivalent 
> "opacity") argument
> 15b5aa2b60 Trac #25081: The polar of a polyhedron should carry the backend 
> used.
> 62a893aba3 Trac #25080: code for Cartesian factorization of posets
> 89ec1fb5c2 Trac #25075: pyflakes cleanup in combinat
> 329c579bac Trac #25074: upgrade to ipywidgets 7.2.0
> a5122d141e Trac #25067: Implement quantum group q-numbers
> 054122ae77 Trac #25065: partition input is ignored when casting DiGraph as 
> BipartiteGraph
> 09f6b467c5 Trac #25064: more conversions from http to https
> 7f5a1dad2b Trac #25063: py3: get rid of __cmp__ in interfaces
> 430abb3957 Trac #25062: another typo ticket, yet
> ae77a27f60 Trac #25061: Replace MatrixFactory.__call__ by an ordinary 
> function
> 920bfc0f16 Trac #25060: py3: more rich comparison for multivariate 
> polynomials
> eec16d96bd Trac #25059: py3: get rid of some  __cmp__ in string monoids
> d7b39179bc Trac #25058: corrections to input for posets
> 7993a2d1d3 Trac #25053: py3: remove __cmp__ in free monoids
> 6513b621f8 Trac #25052: Add DESTDIR support for openblas
> ab02054314 Trac #25042: Add DESTDIR support for freetype
> bc875efff0 Trac #15597: Quasi-shuffle product
> 670713abd7 Trac #25129: Fix "offline" viewing of threejs plots on Cygwin
> 6cfeb59db4 Trac #25038: Use sage-dist-helpers for curl and gc
> 235703c6da Trac #25037: Add destdir support and other cleanup for ntl
> fbcf50432c Trac #25036: Code cleanup in plot3d
> a698014552 Trac #25023: Adds function to compute quadratic defect
> 1f7f75b42f Trac #25022: change_ring broken on polynomials
> f997efffd1 Trac #25018: Bug in shuffle product `ShuffleProduct_w1w2`
> 1c38098666 Trac #25016: Add PyCygwin