Re: [sage-release] Re: Sage 8.7.beta6 released

[kcrisman]

For a data point, I am currently trying to use binary-pkg to create a Sage 
9.0 binary for Mac, and ran into *exactly* the same issue - presumably 
because it (the version of Sage I had in binary-pkg, that is) had upgraded 
from 8.9.beta6 or so.  I guess it must have hit the window for not having 
this dist-helpers file around.

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Re: [sage-release] Re: Sage 8.7.beta6 released

[kcrisman]

>
> > This has also been reported on devel [1,2] and might affect more Mac 
> users when upgrading to 8.9. Perhaps a copy of sage-dist-helpers could be 
> added back to src/bin for some deprecation period? 
>
> A symlink could do it. 
>

Very nice sleuthing all around.  I do recommend something be done for that 
as a stopgap for an 8.9rc - presumably it should also be tested out.  But 
for people who do not regularly upgrade to betas, but do build from source, 
this would be quite helpful. 

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Re: [sage-release] Re: Sage 8.7.beta6 released

[E. Madison Bray]

On Thu, Aug 15, 2019 at 6:58 PM Markus Wageringel
 wrote:
>
> This also happened to me a few weeks ago. The underlying problem seems to be 
> that the uninstall script fails because it tries to call sage-dist-helpers, 
> but cannot find it. This file has recently been moved from src/bin to 
> build/bin, which the uninstall script cannot know about. Once upgraded to Gap 
> 4.10.2.p0, it points to the new location of sage-dist-helpers, so this 
> particular problem should not happen again.

Good catch!

> This has also been reported on devel [1,2] and might affect more Mac users 
> when upgrading to 8.9. Perhaps a copy of sage-dist-helpers could be added 
> back to src/bin for some deprecation period?

A symlink could do it.

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Re: [sage-release] Re: Sage 8.7.beta6 released

[John H Palmieri]

Yes, that fits. Now that I know to look, I see buried in my gap install log 

Uninstalling existing 'gap'
Running pre-uninstall script for 'gap'
/Users/jpalmier/Desktop/Sage/git/sage/local/var/lib/sage/scripts/gap/spkg-prerm:
 
line 13: /Users/jpalmier/Desktop/Sage/git/sage/src/bin/sage-dist-helpers: 
No such file or directory
Error: failed to source sage-dist-helpers
Is /Users/jpalmier/Desktop/Sage/git/sage the correct SAGE_ROOT?
Error: The pre-uninstall script for 'gap' failed; the package will not be 
uninstalled, and some manual intervention may be needed to repair the 
package's state before uninstallation can proceed.  Check further up in 
this log for more details, or the pre-uninstall script itself at 
/Users/jpalmier/Desktop/Sage/git/sage/local/var/lib/sage/scripts/gap/spkg-prerm.



On Thursday, August 15, 2019 at 10:58:22 AM UTC-7, Markus Wageringel wrote:
>
> This also happened to me a few weeks ago. The underlying problem seems to 
> be that the uninstall script fails because it tries to call 
> sage-dist-helpers, but cannot find it. This file has recently been moved 
> from src/bin to build/bin, which the uninstall script cannot know about. 
> Once upgraded to Gap 4.10.2.p0, it points to the new location of 
> sage-dist-helpers, so this particular problem should not happen again.
>
> This has also been reported on devel [1,2] and might affect more Mac users 
> when upgrading to 8.9. Perhaps a copy of sage-dist-helpers could be added 
> back to src/bin for some deprecation period?
>
> [1] https://groups.google.com/forum/#!topic/sage-devel/cdw793St6cE
> [2] https://groups.google.com/forum/#!topic/sage-devel/h-hXvO2fxgc
>
>

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Re: [sage-release] Re: Sage 8.7.beta6 released

[Markus Wageringel]

This also happened to me a few weeks ago. The underlying problem seems to 
be that the uninstall script fails because it tries to call 
sage-dist-helpers, but cannot find it. This file has recently been moved 
from src/bin to build/bin, which the uninstall script cannot know about. 
Once upgraded to Gap 4.10.2.p0, it points to the new location of 
sage-dist-helpers, so this particular problem should not happen again.

This has also been reported on devel [1,2] and might affect more Mac users 
when upgrading to 8.9. Perhaps a copy of sage-dist-helpers could be added 
back to src/bin for some deprecation period?

[1] https://groups.google.com/forum/#!topic/sage-devel/cdw793St6cE
[2] https://groups.google.com/forum/#!topic/sage-devel/h-hXvO2fxgc

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Re: [sage-release] Re: Sage 8.7.beta6 released

[kcrisman]

> That's expected.  The package build directory is under SAGE_LOCAL 
> ($SAGE_LOCAL/var/tmp/sage/build/gap-4.10.0.p0) but the file's 
> destination path ($SAGE_LOCAL) is appended to this.  This is how it's 
> supposed to work (DESTDIR installation). 
>
> It's probably too late to diagnose now (though it would be good if you 
> could give steps to reproduce). 


Yeah, unfortunately my main goal was getting a working Sage install, so the 
evidence has been eliminated, so to speak.
 

>  But the question is what type of file 
> was 
>
> /Users/karl.crisman/Downloads/sage/local/./share/gap/bin/x86_64-apple-darwin15.6.0-default64/src
>  
>
>
> that it refuses to overwrite because it was supposedly a directory? 
>


I can tell you a rough answer to that, after my most recent upgrade the 
name of the directory seems to have changed slightly though:

$ ls -l 
~/Downloads/sage/local/share/gap/bin/x86_64-apple-darwin15.6.0-default64-kv3/

total 32

lrwxr-xr-x  1 karl.crisman  78570554  18 Aug 14 14:39 config.h -> 
../../gen/config.h

lrwxr-xr-x  1 karl.crisman  78570554   9 Aug 14 14:39 gac -> ../../gac

lrwxr-xr-x  1 karl.crisman  78570554   9 Aug 14 14:39 gap -> ../../gap

lrwxr-xr-x  1 karl.crisman  78570554   9 Aug 14 14:40 src -> ../../src
 

>
> The GAP package installs a *symlink* at the path 
> $SAGE_LOCAL/share/gap/bin//src 
>
>
So yes, that is what seems to be happening.
 

> When you upgrade GAP, first of all, it should be *uninstalling* the 
> previous gap package, so this link should just be removed.  The 
> question is was it a symlink for you in the first place?


Apparently.
 

>  Or an actual 
> directory?  When you run `make clean-gap` does it get removed? 
>
>
Is that something I can do from within Sage?  I didn't know that was a make 
target for us.   My assumption is that the symlink was not removed or it 
wouldn't have complained.

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Re: [sage-release] Re: Sage 8.7.beta6 released

[Dima Pasechnik]

this is a MacOS only bug. Someone running it should work on fix...


On Wed, 14 Aug 2019 20:35 kcrisman,  wrote:

>
>
> On Friday, March 8, 2019 at 8:18:02 AM UTC-5, Dima Pasechnik wrote:
>>
>> On Fri, Mar 8, 2019 at 12:40 PM kcrisman  wrote:
>> >
>> >
>> >
>> > On Friday, March 8, 2019 at 3:24:45 AM UTC-5, Dima Pasechnik wrote:
>> >>
>> >> https://trac.sagemath.org/ticket/27388 fixed the permissions, but
>> >> because it's an upgrade from the state where there was a read-only
>> >> file, it breaks (on OSX only)
>> >
>> >
>> > Would that mean that, in general, upgrades from beta4 (which seems to
>> be the last version without this problem, according to one of the tickets)
>> via git pull and make will break indefinitely?  Should we have a blanket
>> recommendation to rebuild from scratch?
>>
>> this is too blanket :-)
>> e.g. in this particular case it suffices to manually remove
>> SAGE_LOCAL/share/gap
>> and rebuild gap spkg
>> (and then run make, naturally...)
>>
>
> Weirdly, I had to do this again even after the update mentioned here
> (apparently going from 8.7.beta6 to 8.9.beta6).   Is this likely to happen
> every time we upgrade GAP?
>
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>

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Re: [sage-release] Re: Sage 8.7.beta6 released

[kcrisman]

On Friday, March 8, 2019 at 8:18:02 AM UTC-5, Dima Pasechnik wrote:
>
> On Fri, Mar 8, 2019 at 12:40 PM kcrisman > 
> wrote: 
> > 
> > 
> > 
> > On Friday, March 8, 2019 at 3:24:45 AM UTC-5, Dima Pasechnik wrote: 
> >> 
> >> https://trac.sagemath.org/ticket/27388 fixed the permissions, but 
> >> because it's an upgrade from the state where there was a read-only 
> >> file, it breaks (on OSX only) 
> > 
> > 
> > Would that mean that, in general, upgrades from beta4 (which seems to be 
> the last version without this problem, according to one of the tickets) via 
> git pull and make will break indefinitely?  Should we have a blanket 
> recommendation to rebuild from scratch? 
>
> this is too blanket :-) 
> e.g. in this particular case it suffices to manually remove 
> SAGE_LOCAL/share/gap 
> and rebuild gap spkg 
> (and then run make, naturally...) 
>

Weirdly, I had to do this again even after the update mentioned here 
(apparently going from 8.7.beta6 to 8.9.beta6).   Is this likely to happen 
every time we upgrade GAP?

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Re: [sage-release] Re: Sage 8.7.beta6 released

[kcrisman]

> this is too blanket :-) 
> e.g. in this particular case it suffices to manually remove 
> SAGE_LOCAL/share/gap 
> and rebuild gap spkg 
> (and then run make, naturally...) 
>
>
Great, thanks!  Apparently that sufficed.
 

> Certainly there is never a guarantee that a "git pull"+"make" would 
> just work, as 
> the current state could be beyond repair... 
>
>
Yes, of course!  In this case I had a working Sage install at beta1 or 
beta2, though.

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Re: [sage-release] Re: Sage 8.7.beta6 released

[Dima Pasechnik]

On Fri, Mar 8, 2019 at 12:40 PM kcrisman  wrote:
>
>
>
> On Friday, March 8, 2019 at 3:24:45 AM UTC-5, Dima Pasechnik wrote:
>>
>> https://trac.sagemath.org/ticket/27388 fixed the permissions, but
>> because it's an upgrade from the state where there was a read-only
>> file, it breaks (on OSX only)
>
>
> Would that mean that, in general, upgrades from beta4 (which seems to be the 
> last version without this problem, according to one of the tickets) via git 
> pull and make will break indefinitely?  Should we have a blanket 
> recommendation to rebuild from scratch?

this is too blanket :-)
e.g. in this particular case it suffices to manually remove SAGE_LOCAL/share/gap
and rebuild gap spkg
(and then run make, naturally...)

Certainly there is never a guarantee that a "git pull"+"make" would
just work, as
the current state could be beyond repair...

> Thanks for any advice here - luckily from testing the app version I have some 
> still working Sage installs, but I like having my devel version separately 
> working.
>
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Re: [sage-release] Re: Sage 8.7.beta6 released

[kcrisman]

On Friday, March 8, 2019 at 3:24:45 AM UTC-5, Dima Pasechnik wrote:
>
> https://trac.sagemath.org/ticket/27388 fixed the permissions, but 
> because it's an upgrade from the state where there was a read-only 
> file, it breaks (on OSX only) 
>

Would that mean that, in general, upgrades from beta4 (which seems to be 
the last version without this problem, according to one of the tickets) via 
git pull and make will break indefinitely?  Should we have a blanket 
recommendation to rebuild from scratch?  Thanks for any advice here - 
luckily from testing the app version I have some still working Sage 
installs, but I like having my devel version separately working.

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Re: [sage-release] Re: Sage 8.7.beta6 released

[Dima Pasechnik]

https://trac.sagemath.org/ticket/27388 fixed the permissions, but
because it's an upgrade from the state where there was a read-only
file, it breaks (on OSX only)

On Thu, Mar 7, 2019 at 4:50 PM kcrisman  wrote:
>
> upgrading from some early 8.6 beta, I get something weird with file 
> permissions on gap.  Everything seems to go well, but:
>
>
>
> pkg/laguna-3.9.0 -> 
> /Users/.../sage/local/var/tmp/sage/build/gap-4.10.0.p0/inst/Users/.../sage/local/share/gap/pkg
>
> pkg/polenta-1.3.8 -> 
> /Users/.../sage/local/var/tmp/sage/build/gap-4.10.0.p0/inst/Users/.../sage/local/share/gap/pkg
>
> pkg/polycyclic-2.14 -> 
> /Users/.../sage/local/var/tmp/sage/build/gap-4.10.0.p0/inst/Users/.../sage/local/share/gap/pkg
>
> pkg/resclasses-4.7.1 -> 
> /Users/.../sage/local/var/tmp/sage/build/gap-4.10.0.p0/inst/Users/.../sage/local/share/gap/pkg
>
> pkg/sophus-1.24 -> 
> /Users/.../sage/local/var/tmp/sage/build/gap-4.10.0.p0/inst/Users/.../sage/local/share/gap/pkg
>
> pkg/tomlib-1.2.7 -> 
> /Users/.../sage/local/var/tmp/sage/build/gap-4.10.0.p0/inst/Users/.../sage/local/share/gap/pkg
>
> ../gap -> 
> /Users/.../sage/local/var/tmp/sage/build/gap-4.10.0.p0/inst/Users/.../sage/local/bin/gap
>
>
> real 2m48.230s
>
> user 1m30.082s
>
> sys 0m59.461s
>
> Copying package files from temporary location 
> /Users/.../sage/local/var/tmp/sage/build/gap-4.10.0.p0/inst to 
> /Users/.../sage/local
>
> cp: cannot overwrite directory 
> /Users/.../sage/local/./share/gap/bin/x86_64-apple-darwin15.6.0-default64/src 
> with non-directory 
> /Users/.../sage/local/var/tmp/sage/build/gap-4.10.0.p0/inst/Users/.../sage/local/./share/gap/bin/x86_64-apple-darwin15.6.0-default64/src
>
> cp: /Users/.../sage/local/./share/gap/pkg/ctbllib/tst/docxpl.tst: Permission 
> denied
>
> 
>
> Error copying files for gap-4.10.0.p0.
>
> 
>
>
> I have a feeling that there is a typo of some kind in the commit
>
>
> https://github.com/sagemath/sage/commit/ca94bd97d73ee544c273fbb28cb774b3af12ecb6#diff-a9a04fa360dca60daa488241916fdb9c
>
>
> though I can't say immediately where, because the full line is
>
>
> non-directory 
> /Users/karl.crisman/Downloads/sage/local/var/tmp/sage/build/gap-4.10.0.p0/inst/Users/karl.crisman/Downloads/sage/local/./share/gap/bin/x86_64-apple-darwin15.6.0-default64/src
>
>
> and indeed I don't see why there should be a file that has the entire path to 
> sage/local TWICE; probably should use a temp file if for some reason that was 
> the desired behavior? I did not do anything unusual in this setup.
>
>
> Thanks!  Everything else seems to be progressing normally.
>
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[sage-release] Re: Sage 8.7.beta6 released

[Steven Trogdon]

Perhaps this is https://trac.sagemath.org/ticket/26996#comment:23. Or at 
least very similar.

On Thursday, March 7, 2019 at 10:50:10 AM UTC-6, kcrisman wrote:
>
> upgrading from some early 8.6 beta, I get something weird with file 
> permissions on gap.  Everything seems to go well, but:
>
>
>
> pkg/laguna-3.9.0 -> 
> /Users/.../sage/local/var/tmp/sage/build/gap-4.10.0.p0/inst/Users/.../sage/local/share/gap/pkg
>
> pkg/polenta-1.3.8 -> 
> /Users/.../sage/local/var/tmp/sage/build/gap-4.10.0.p0/inst/Users/.../sage/local/share/gap/pkg
>
> pkg/polycyclic-2.14 -> 
> /Users/.../sage/local/var/tmp/sage/build/gap-4.10.0.p0/inst/Users/.../sage/local/share/gap/pkg
>
> pkg/resclasses-4.7.1 -> 
> /Users/.../sage/local/var/tmp/sage/build/gap-4.10.0.p0/inst/Users/.../sage/local/share/gap/pkg
>
> pkg/sophus-1.24 -> 
> /Users/.../sage/local/var/tmp/sage/build/gap-4.10.0.p0/inst/Users/.../sage/local/share/gap/pkg
>
> pkg/tomlib-1.2.7 -> 
> /Users/.../sage/local/var/tmp/sage/build/gap-4.10.0.p0/inst/Users/.../sage/local/share/gap/pkg
>
> ../gap -> 
> /Users/.../sage/local/var/tmp/sage/build/gap-4.10.0.p0/inst/Users/.../sage/local/bin/gap
>
>
> real 2m48.230s
>
> user 1m30.082s
>
> sys 0m59.461s
>
> Copying package files from temporary location 
> /Users/.../sage/local/var/tmp/sage/build/gap-4.10.0.p0/inst to 
> /Users/.../sage/local
>
> cp: cannot overwrite directory 
> /Users/.../sage/local/./share/gap/bin/x86_64-apple-darwin15.6.0-default64/src 
> with non-directory 
> /Users/.../sage/local/var/tmp/sage/build/gap-4.10.0.p0/inst/Users/.../sage/local/./share/gap/bin/x86_64-apple-darwin15.6.0-default64/src
>
> cp: /Users/.../sage/local/./share/gap/pkg/ctbllib/tst/docxpl.tst: 
> Permission denied
>
> 
>
> Error copying files for gap-4.10.0.p0.
>
> 
>
>
> I have a feeling that there is a typo of some kind in the commit 
>
>
>
> https://github.com/sagemath/sage/commit/ca94bd97d73ee544c273fbb28cb774b3af12ecb6#diff-a9a04fa360dca60daa488241916fdb9c
>
>
> though I can't say immediately where, because the full line is
>
>
> non-directory 
> /Users/karl.crisman/Downloads/sage/local/var/tmp/sage/build/gap-4.10.0.p0/inst/Users/karl.crisman/Downloads/sage/local/./share/gap/bin/x86_64-apple-darwin15.6.0-default64/src
>
>
> and indeed I don't see why there should be a file that has the entire path 
> to sage/local TWICE; probably should use a temp file if for some reason 
> that was the desired behavior? I did not do anything unusual in this setup.
>
>
> Thanks!  Everything else seems to be progressing normally.
>

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[sage-release] Re: Sage 8.7.beta6 released

[kcrisman]

upgrading from some early 8.6 beta, I get something weird with file 
permissions on gap.  Everything seems to go well, but:



pkg/laguna-3.9.0 -> 
/Users/.../sage/local/var/tmp/sage/build/gap-4.10.0.p0/inst/Users/.../sage/local/share/gap/pkg

pkg/polenta-1.3.8 -> 
/Users/.../sage/local/var/tmp/sage/build/gap-4.10.0.p0/inst/Users/.../sage/local/share/gap/pkg

pkg/polycyclic-2.14 -> 
/Users/.../sage/local/var/tmp/sage/build/gap-4.10.0.p0/inst/Users/.../sage/local/share/gap/pkg

pkg/resclasses-4.7.1 -> 
/Users/.../sage/local/var/tmp/sage/build/gap-4.10.0.p0/inst/Users/.../sage/local/share/gap/pkg

pkg/sophus-1.24 -> 
/Users/.../sage/local/var/tmp/sage/build/gap-4.10.0.p0/inst/Users/.../sage/local/share/gap/pkg

pkg/tomlib-1.2.7 -> 
/Users/.../sage/local/var/tmp/sage/build/gap-4.10.0.p0/inst/Users/.../sage/local/share/gap/pkg

../gap -> 
/Users/.../sage/local/var/tmp/sage/build/gap-4.10.0.p0/inst/Users/.../sage/local/bin/gap


real 2m48.230s

user 1m30.082s

sys 0m59.461s

Copying package files from temporary location 
/Users/.../sage/local/var/tmp/sage/build/gap-4.10.0.p0/inst to 
/Users/.../sage/local

cp: cannot overwrite directory 
/Users/.../sage/local/./share/gap/bin/x86_64-apple-darwin15.6.0-default64/src 
with non-directory 
/Users/.../sage/local/var/tmp/sage/build/gap-4.10.0.p0/inst/Users/.../sage/local/./share/gap/bin/x86_64-apple-darwin15.6.0-default64/src

cp: /Users/.../sage/local/./share/gap/pkg/ctbllib/tst/docxpl.tst: 
Permission denied



Error copying files for gap-4.10.0.p0.




I have a feeling that there is a typo of some kind in the commit 


https://github.com/sagemath/sage/commit/ca94bd97d73ee544c273fbb28cb774b3af12ecb6#diff-a9a04fa360dca60daa488241916fdb9c


though I can't say immediately where, because the full line is


non-directory 
/Users/karl.crisman/Downloads/sage/local/var/tmp/sage/build/gap-4.10.0.p0/inst/Users/karl.crisman/Downloads/sage/local/./share/gap/bin/x86_64-apple-darwin15.6.0-default64/src


and indeed I don't see why there should be a file that has the entire path 
to sage/local TWICE; probably should use a temp file if for some reason 
that was the desired behavior? I did not do anything unusual in this setup.


Thanks!  Everything else seems to be progressing normally.

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[sage-release] Re: Sage 8.7.beta6 released

[Emmanuel Charpentier]

Ditto on two other similar achines; however, I got a transient failure on 
tesing an example coming form the "Mathematical Computihg with Sagemath" 
book :

--
sage -t --long --warn-long 53.4 
src/sage/tests/books/computational-mathematics-with-sagemath/graphique_doctest.py
  
# 1 doctest failed
--

The relevant portion of the log is :

File 
"src/sage/tests/books/computational-mathematics-with-sagemath/graphique_doctest.py",
 
line 112, in 
sage.tests.books.computational-mathematics-with-sagemath.graphique_doctest
Failed example:
for i in srange(-2, 2, 0.2):  # long time
g += line(desolve_rk4(DE, y(x), ics=[1, i],\
  step=0.05, end_points=[0,2]))
g += line(desolve_rk4(DE, y(x), ics=[-1, i],\
  step=0.05, end_points=[-2,0]))
Exception raised:
Traceback (most recent call last):
  File 
"/usr/local/sage-8/local/lib/python2.7/site-packages/sage/doctest/forker.py", 
line 671, in _run
self.compile_and_execute(example, compiler, test.globs)
  File 
"/usr/local/sage-8/local/lib/python2.7/site-packages/sage/doctest/forker.py", 
line 1095, in compile_and_execute
exec(compiled, globs)
  File "",
 
line 3, in 
step=RealNumber('0.05'), end_points=[Integer(0),Integer(2)]))
  File 
"/usr/local/sage-8/local/lib/python2.7/site-packages/sage/calculus/desolvers.py",
 
line 1378, in desolve_rk4
sol_2=maxima(cmd).sage()
  File 
"/usr/local/sage-8/local/lib/python2.7/site-packages/sage/interfaces/interface.py",
 
line 1074, in sage
return self._sage_(*args, **kwds)
  File 
"/usr/local/sage-8/local/lib/python2.7/site-packages/sage/interfaces/maxima_abstract.py",
 
line 1238, in _sage_
maxima=self.parent())
  File 
"/usr/local/sage-8/local/lib/python2.7/site-packages/sage/calculus/calculus.py",
 
line 2210, in symbolic_expression_from_maxima_string
raise TypeError("unable to make sense of Maxima expression '%s' in 
Sage"%s)
TypeError: unable to make sense of Maxima expression 
'(kill(sage4)$o44)[[1.0,-2.0],[1.05,-2.149874965475482],[1.1,-2.29839830521],[1.15,-2.446624921487998],[1.2,-2.59109207452],[1.25,-2.7343749020044],[1.3,-2.872999899091065],[1.35,-3.007124899832311],[1.4,-3.13503712506],[1.45,-3.258874910310362],[1.5,-3.37419279643],[1.55,-3.483624930334245],[1.6,-3.5834323656],[1.65,-3.675374957788335],[1.7,-3.75673823437],[1.75,-3.828124991202094],[1.8,-3.88809806273],[1.85,-3.935875029535953],[1.9,-3.97150306113],[1.95,-3.992625072044261],[2.0,-4.00094688424]]'
 
in Sage
**
1 item had failures:
   1 of 117 in 
sage.tests.books.computational-mathematics-with-sagemath.graphique_doctest


In all cases, re-running the doctest standalone passed.

HTH,


Le dimanche 3 mars 2019 22:41:11 UTC+1, Emmanuel Charpentier a écrit :
>
> On Debian testing running on core i7 + 16 GB RAM, incremental build 
> (Python 2.7) starting from 8.7.beta5 builds and passes ptestlong with no 
> failure.
>
> HTH,
>
> Le dimanche 3 mars 2019 01:30:18 UTC+1, Volker Braun a écrit :
>>
>> As always, you can get the latest beta version from the "develop" git 
>> branch. Alternatively, the self-contained source tarball is at 
>> http://www.sagemath.org/download-latest.html
>>
>>
>> c59b6881d8 (tag: 8.7.beta6, trac/develop) Updated SageMath version to 
>> 8.7.beta6
>> 1410d220ab Trac #27379: Speed up coercions
>> 93923a826c Trac #27001: py3: fix pip_installed_packages
>> 6f4efa962a Trac #27381: Use of -valgrind/--valgrind in doctesting is 
>> broken
>> 579dcfca6c Trac #27378: Py3: Fix graphic_matroids.py for python3
>> 59c9d07b0e Trac #27371: coxeter_diagram() of relabeled Cartan types 
>> should attempt to relabel their base Coxeter diagram
>> c79e04f661 Trac #27362: Setting PYTHONPATH in spkg-install for pip is 
>> fragile
>> 20c3d7a1b8 Trac #27238: use system's gf2x if available
>> 5717cdd07d Trac #25614: 2 internet doctest failing in misc/persist.pyx
>> 0218ccfee5 Trac #23024: Replacement of sage/libs/ppl.pyx by pplpy
>> b5905c6bd7 Trac #27380: fix gap_packages install on OSX
>> 3985cf3666 Trac #27361: MR8: fix doctest for an undated sequence
>> f8252a7ded Trac #27353: Coerce_dict deprecations and documention updates
>> dc7b849a5c Trac #27349: py3 compatible test for the category of finite 
>> posets
>> 05319047a1 Trac #27357: remove deprecation in finite state machines
>> eba7d0f3c4 Trac #27356: remove one deprecated file in species
>> 2419827a91 Trac #27355: remove deprecated stuff in pbori.pyx
>> 9f32d7ee13 Trac #27344: py3: fix some doctests about hash for real and 
>> complex double
>> ce983fe476 Trac #27342: py3: some tiny fixes in numerical folder
>> d526ff1cf0 Trac #27245: py3: fix doctests in generic_graph (part 9) -- 
>> automorphism_group
>> 

[sage-release] Re: Sage 8.7.beta6 released

[Sébastien Labbé]

Testing with --optional=sage,optional,external

with

Using 
--optional=bliss,cbc,ccache,cmake,cryptominisat,dot2tex,external,glucose,lrslib,memlimit,mpir,normaliz,notedown,pandoc_attributes,pycosat,pynormaliz,python2,rst2ipynb,sage
External software detected for doctesting: 
ffmpeg,graphviz,gurobi,imagemagick,internet,latex,pandoc

I get All tests passed except:

--
sage -t --long src/sage/symbolic/integration/external.py  # 1 doctest failed
sage -t --long src/sage/arith/misc.py  # 1 doctest failed
sage -t --long src/sage/combinat/designs/ext_rep.py  # 1 doctest failed
sage -t --long src/sage/combinat/designs/design_catalog.py  # 3 doctests 
failed
sage -t --long src/sage/combinat/designs/covering_design.py  # 2 doctests 
failed
--

misc.py and external.py issues are not reproducable:

sage -t src/sage/arith/misc.py
[918 tests, 4.20 s]
sage -t src/sage/symbolic/integration/external.py
[35 tests, 22.79 s]

designs failures seem related to a URL that changed again.

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[sage-release] Re: Sage 8.7.beta6 released

[Emmanuel Charpentier]

On Debian testing running on core i7 + 16 GB RAM, incremental build (Python 
2.7) starting from 8.7.beta5 builds and passes ptestlong with no failure.

HTH,

Le dimanche 3 mars 2019 01:30:18 UTC+1, Volker Braun a écrit :
>
> As always, you can get the latest beta version from the "develop" git 
> branch. Alternatively, the self-contained source tarball is at 
> http://www.sagemath.org/download-latest.html
>
>
> c59b6881d8 (tag: 8.7.beta6, trac/develop) Updated SageMath version to 
> 8.7.beta6
> 1410d220ab Trac #27379: Speed up coercions
> 93923a826c Trac #27001: py3: fix pip_installed_packages
> 6f4efa962a Trac #27381: Use of -valgrind/--valgrind in doctesting is broken
> 579dcfca6c Trac #27378: Py3: Fix graphic_matroids.py for python3
> 59c9d07b0e Trac #27371: coxeter_diagram() of relabeled Cartan types should 
> attempt to relabel their base Coxeter diagram
> c79e04f661 Trac #27362: Setting PYTHONPATH in spkg-install for pip is 
> fragile
> 20c3d7a1b8 Trac #27238: use system's gf2x if available
> 5717cdd07d Trac #25614: 2 internet doctest failing in misc/persist.pyx
> 0218ccfee5 Trac #23024: Replacement of sage/libs/ppl.pyx by pplpy
> b5905c6bd7 Trac #27380: fix gap_packages install on OSX
> 3985cf3666 Trac #27361: MR8: fix doctest for an undated sequence
> f8252a7ded Trac #27353: Coerce_dict deprecations and documention updates
> dc7b849a5c Trac #27349: py3 compatible test for the category of finite 
> posets
> 05319047a1 Trac #27357: remove deprecation in finite state machines
> eba7d0f3c4 Trac #27356: remove one deprecated file in species
> 2419827a91 Trac #27355: remove deprecated stuff in pbori.pyx
> 9f32d7ee13 Trac #27344: py3: fix some doctests about hash for real and 
> complex double
> ce983fe476 Trac #27342: py3: some tiny fixes in numerical folder
> d526ff1cf0 Trac #27245: py3: fix doctests in generic_graph (part 9) -- 
> automorphism_group
> bbea55c96e Trac #27335: Out-of-bounds memory access in PARI isprime() 
> function
> b58cc78594 Trac #27267: Segfaults in cypari2 when running out of stack 
> during deep object deallocation
> 4ab5e8ed62 Trac #27345: details in quasisymmetric functions
> cea95db339 Trac #27343: py3: various tiny fixes
> 22b485e035 Trac #27340: Update git-trac instructions in developer's guide
> 5fb4d426a2 Trac #27179: py3: fix doctest in generic_graph (part 2) -- 
> cycle_basis
> 613a369840 Trac #27065: py3: handle the explain_pickle problem
> bf8228587a Trac #27332: py3: Fix printing of microseconds in timeit
> 7422882f6c Trac #27329: Polyhedron/base: very minor "fixes"
> 2d21b7cbfc Trac #27322: Fix indentation in 'solve' docstring
> 5fc7c83a15 Trac #27338: Fix Trac reference in doctest for ticket 15669
> bd7dbaa092 Trac #27337: Deprecate imports in sage.tests.all: no need to 
> important into global namespace
> 94d773a9db Trac #10599: implicit_plot3d should be able to handle functions 
> with AlgebraicNumber values
> 2b366fa439 Trac #27341: spring cleanup in Hasse diagrams
> 34a9911ffb Trac #27256: Re-enable USE_TLS=1 when building OpenBLAS SPKG
> 217cb83113 (tag: 8.7.beta5) Updated SageMath version to 8.7.beta5
>
>

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