Re: [sage-release] Re: Sage 9.1.beta0 released
probably you need to rebuild at least sagelib. ./sage -f sagelib On Wed, Jan 15, 2020 at 1:18 PM 'Martin R' via sage-release wrote: > > For the record: > > ImportError: /usr/lib/x86_64-linux-gnu/libgsl.so.23: undefined symbol: > cblas_ctrmv > > > Am Mittwoch, 15. Januar 2020 14:16:39 UTC+1 schrieb Martin R: >> >> I'm afraid I was celebrating too early. make build succeeded, but sage >> doesn't start anymore now. I guess I should start from scratch. :-( >> >> Am Mittwoch, 15. Januar 2020 14:07:49 UTC+1 schrieb Martin R: >>> >>> BINGO!!! >>> >>> Many many many thanks! >>> >>> Martin >>> >>> Am Mittwoch, 15. Januar 2020 14:00:29 UTC+1 schrieb Dima Pasechnik: Note that you need to uninstall bzip2, xz, pcre, readline, curl before the corresponding system versions are picked up by ./configure (of course all this is not needed for fresh builds...) if this does not help please post config.log On Wed, Jan 15, 2020 at 12:53 PM 'Martin R' via sage-release wrote: > > > > Am Mittwoch, 15. Januar 2020 13:23:17 UTC+1 schrieb Dima Pasechnik: >> >> On Wed, Jan 15, 2020 at 12:13 PM 'Martin R' via sage-release >> wrote: >> > >> > Oh dea, this is becoming strange: >> > >> > The output of configure says that >> > >> > atlas, openblas, iconv will NOT be installed, but >> > >> > bzip2-1.0.6-20150304.p0 >> > readline-6.3.008.p0 >> > xz-5.2.2.p0 >> > pcre-8.40.p2 >> > curl-7.62.0.p0 >> > >> > However, I certainly have bzip2, xz, pcre and curl on my system, and >> > I guess also readline. >> > >> > Might there be a bug in configure? >> >> You need development versions of these, see >> https://doc.sagemath.org/html/en/installation/source.html#linux-recommended-installation >> >> So, on Ubuntu: >> >> libbz2-dev >> libreadline-dev (seems to be missing in docs) >> liblzma-dev (this is the xz lib, iirc) >> libpcre3-dev >> libcurl4-openssl-dev > > >> >> the last of these, libcurl4-openssl-dev was indeed missing, but >> configure still wants to build r :-( > > > Martin >> >> >> >> > >> > Martin >> > >> > Am Mittwoch, 15. Januar 2020 13:00:51 UTC+1 schrieb Dima Pasechnik: >> >> >> >> On Wed, Jan 15, 2020 at 11:35 AM 'Martin R' via sage-release >> >> wrote: >> >> > >> >> > Am Mittwoch, 15. Januar 2020 12:02:30 UTC+1 schrieb Dima Pasechnik: >> >> >> >> >> >> On Wed, Jan 15, 2020 at 10:37 AM 'Martin R' via sage-release >> >> >> wrote: >> >> >> > >> >> >> > Thanks again! It still tries to build R and fails >> >> >> > >> >> >> > I checked that system R starts, it does (R version 3.4.4) >> >> >> Please also make sure that >> >> >> >> >> >> pkg-config --modversion libR >> >> >> >> >> >> outputs the version. >> >> >> >> >> > Yes, it does. >> >> > >> >> >> >> >> >> However there is just no "checking for R" message in your >> >> >> config.log, >> >> >> it indicates that there are still remains of R left >> >> >> in your installation. >> >> >> >> >> >> I've opened https://trac.sagemath.org/ticket/29016 >> >> >> to deal with R being hard to clean away - feel free to try it. >> >> >> >> >> >> Maybe you also need to run >> >> >> >> >> >> make r-clean >> >> > >> >> > >> >> > I did that, it says that there is no legacy uninstaller for r, and >> >> > that there is nothing to do. I checked for the files in the >> >> > ticket, but none of them exists. :-( >> >> > >> >> > The config.log contains the lines >> >> > >> >> > configure:18950: checking installing any of atlas openblas iconv >> >> > readline bzip2 xz pcre curl? >> >> > configure:18954: result: yes; install r as well >> >> > >> >> > but I do not know how to find out which of those (atlas openblas >> >> > iconv readline bzip2 xz pcre curl) is the problem. >> >> >> >> The easiest is to look at the output of ./configure >> >> It should contain lines like >> >> >> >> atlas-3.10.2.p3 will not be installed (configure check) >> >> >> >> for each of the packages in that list. >> >> So for any of these that are not marked this way, please install the >> >> corresponding system package >> >> and re-run configure. >> >> >> >> >> >> >> >> > >> >> > Martin >> >> > >> >> > -- >> >> > You received this message because you are subscribed to the Google >> >> > Groups "sage-release" group. >> >> > To unsubscribe from this group and stop receiving emails from it, >> >> > send an email to sage-r...@googlegroups.com. >> >> > To view this discussion on the web visit
Re: [sage-release] Re: Sage 9.1.beta0 released
For the record: ImportError: /usr/lib/x86_64-linux-gnu/libgsl.so.23: undefined symbol: cblas_ctrmv Am Mittwoch, 15. Januar 2020 14:16:39 UTC+1 schrieb Martin R: > > I'm afraid I was celebrating too early. make build succeeded, but sage > doesn't start anymore now. I guess I should start from scratch. :-( > > Am Mittwoch, 15. Januar 2020 14:07:49 UTC+1 schrieb Martin R: >> >> BINGO!!! >> >> Many many many thanks! >> >> Martin >> >> Am Mittwoch, 15. Januar 2020 14:00:29 UTC+1 schrieb Dima Pasechnik: >>> >>> Note that you need to uninstall bzip2, xz, pcre, readline, curl before >>> the corresponding system >>> versions are picked up by ./configure (of course all this is not >>> needed for fresh builds...) >>> >>> if this does not help please post config.log >>> >>> On Wed, Jan 15, 2020 at 12:53 PM 'Martin R' via sage-release >>> wrote: >>> > >>> > >>> > >>> > Am Mittwoch, 15. Januar 2020 13:23:17 UTC+1 schrieb Dima Pasechnik: >>> >> >>> >> On Wed, Jan 15, 2020 at 12:13 PM 'Martin R' via sage-release >>> >> wrote: >>> >> > >>> >> > Oh dea, this is becoming strange: >>> >> > >>> >> > The output of configure says that >>> >> > >>> >> > atlas, openblas, iconv will NOT be installed, but >>> >> > >>> >> > bzip2-1.0.6-20150304.p0 >>> >> > readline-6.3.008.p0 >>> >> > xz-5.2.2.p0 >>> >> > pcre-8.40.p2 >>> >> > curl-7.62.0.p0 >>> >> > >>> >> > However, I certainly have bzip2, xz, pcre and curl on my system, >>> and I guess also readline. >>> >> > >>> >> > Might there be a bug in configure? >>> >> >>> >> You need development versions of these, see >>> >> >>> https://doc.sagemath.org/html/en/installation/source.html#linux-recommended-installation >>> >>> >> >>> >> So, on Ubuntu: >>> >> >>> >> libbz2-dev >>> >> libreadline-dev (seems to be missing in docs) >>> >> liblzma-dev (this is the xz lib, iirc) >>> >> libpcre3-dev >>> >> libcurl4-openssl-dev >>> > >>> > >>> >> >>> >> the last of these, libcurl4-openssl-dev was indeed missing, but >>> configure still wants to build r :-( >>> > >>> > >>> > Martin >>> >> >>> >> >>> >> >>> >> > >>> >> > Martin >>> >> > >>> >> > Am Mittwoch, 15. Januar 2020 13:00:51 UTC+1 schrieb Dima Pasechnik: >>> >> >> >>> >> >> On Wed, Jan 15, 2020 at 11:35 AM 'Martin R' via sage-release >>> >> >> wrote: >>> >> >> > >>> >> >> > Am Mittwoch, 15. Januar 2020 12:02:30 UTC+1 schrieb Dima >>> Pasechnik: >>> >> >> >> >>> >> >> >> On Wed, Jan 15, 2020 at 10:37 AM 'Martin R' via sage-release >>> >> >> >> wrote: >>> >> >> >> > >>> >> >> >> > Thanks again! It still tries to build R and fails >>> >> >> >> > >>> >> >> >> > I checked that system R starts, it does (R version 3.4.4) >>> >> >> >> Please also make sure that >>> >> >> >> >>> >> >> >> pkg-config --modversion libR >>> >> >> >> >>> >> >> >> outputs the version. >>> >> >> >> >>> >> >> > Yes, it does. >>> >> >> > >>> >> >> >> >>> >> >> >> However there is just no "checking for R" message in your >>> config.log, >>> >> >> >> it indicates that there are still remains of R left >>> >> >> >> in your installation. >>> >> >> >> >>> >> >> >> I've opened https://trac.sagemath.org/ticket/29016 >>> >> >> >> to deal with R being hard to clean away - feel free to try it. >>> >> >> >> >>> >> >> >> Maybe you also need to run >>> >> >> >> >>> >> >> >> make r-clean >>> >> >> > >>> >> >> > >>> >> >> > I did that, it says that there is no legacy uninstaller for r, >>> and that there is nothing to do. I checked for the files in the ticket, >>> but none of them exists. :-( >>> >> >> > >>> >> >> > The config.log contains the lines >>> >> >> > >>> >> >> > configure:18950: checking installing any of atlas openblas iconv >>> readline bzip2 xz pcre curl? >>> >> >> > configure:18954: result: yes; install r as well >>> >> >> > >>> >> >> > but I do not know how to find out which of those (atlas openblas >>> iconv readline bzip2 xz pcre curl) is the problem. >>> >> >> >>> >> >> The easiest is to look at the output of ./configure >>> >> >> It should contain lines like >>> >> >> >>> >> >> atlas-3.10.2.p3 will not be installed (configure check) >>> >> >> >>> >> >> for each of the packages in that list. >>> >> >> So for any of these that are not marked this way, please install >>> the >>> >> >> corresponding system package >>> >> >> and re-run configure. >>> >> >> >>> >> >> >>> >> >> >>> >> >> > >>> >> >> > Martin >>> >> >> > >>> >> >> > -- >>> >> >> > You received this message because you are subscribed to the >>> Google Groups "sage-release" group. >>> >> >> > To unsubscribe from this group and stop receiving emails from >>> it, send an email to sage-r...@googlegroups.com. >>> >> >> > To view this discussion on the web visit >>> https://groups.google.com/d/msgid/sage-release/5d105000-cea2-48a5-8840-aeb405a6cb71%40googlegroups.com. >>> >>> >>> >> > >>> >> > -- >>> >> > You received this message because you are subscribed to the Google >>>
Re: [sage-release] Re: Sage 9.1.beta0 released
I'm afraid I was celebrating too early. make build succeeded, but sage doesn't start anymore now. I guess I should start from scratch. :-( Am Mittwoch, 15. Januar 2020 14:07:49 UTC+1 schrieb Martin R: > > BINGO!!! > > Many many many thanks! > > Martin > > Am Mittwoch, 15. Januar 2020 14:00:29 UTC+1 schrieb Dima Pasechnik: >> >> Note that you need to uninstall bzip2, xz, pcre, readline, curl before >> the corresponding system >> versions are picked up by ./configure (of course all this is not >> needed for fresh builds...) >> >> if this does not help please post config.log >> >> On Wed, Jan 15, 2020 at 12:53 PM 'Martin R' via sage-release >> wrote: >> > >> > >> > >> > Am Mittwoch, 15. Januar 2020 13:23:17 UTC+1 schrieb Dima Pasechnik: >> >> >> >> On Wed, Jan 15, 2020 at 12:13 PM 'Martin R' via sage-release >> >> wrote: >> >> > >> >> > Oh dea, this is becoming strange: >> >> > >> >> > The output of configure says that >> >> > >> >> > atlas, openblas, iconv will NOT be installed, but >> >> > >> >> > bzip2-1.0.6-20150304.p0 >> >> > readline-6.3.008.p0 >> >> > xz-5.2.2.p0 >> >> > pcre-8.40.p2 >> >> > curl-7.62.0.p0 >> >> > >> >> > However, I certainly have bzip2, xz, pcre and curl on my system, and >> I guess also readline. >> >> > >> >> > Might there be a bug in configure? >> >> >> >> You need development versions of these, see >> >> >> https://doc.sagemath.org/html/en/installation/source.html#linux-recommended-installation >> >> >> >> >> So, on Ubuntu: >> >> >> >> libbz2-dev >> >> libreadline-dev (seems to be missing in docs) >> >> liblzma-dev (this is the xz lib, iirc) >> >> libpcre3-dev >> >> libcurl4-openssl-dev >> > >> > >> >> >> >> the last of these, libcurl4-openssl-dev was indeed missing, but >> configure still wants to build r :-( >> > >> > >> > Martin >> >> >> >> >> >> >> >> > >> >> > Martin >> >> > >> >> > Am Mittwoch, 15. Januar 2020 13:00:51 UTC+1 schrieb Dima Pasechnik: >> >> >> >> >> >> On Wed, Jan 15, 2020 at 11:35 AM 'Martin R' via sage-release >> >> >> wrote: >> >> >> > >> >> >> > Am Mittwoch, 15. Januar 2020 12:02:30 UTC+1 schrieb Dima >> Pasechnik: >> >> >> >> >> >> >> >> On Wed, Jan 15, 2020 at 10:37 AM 'Martin R' via sage-release >> >> >> >> wrote: >> >> >> >> > >> >> >> >> > Thanks again! It still tries to build R and fails >> >> >> >> > >> >> >> >> > I checked that system R starts, it does (R version 3.4.4) >> >> >> >> Please also make sure that >> >> >> >> >> >> >> >> pkg-config --modversion libR >> >> >> >> >> >> >> >> outputs the version. >> >> >> >> >> >> >> > Yes, it does. >> >> >> > >> >> >> >> >> >> >> >> However there is just no "checking for R" message in your >> config.log, >> >> >> >> it indicates that there are still remains of R left >> >> >> >> in your installation. >> >> >> >> >> >> >> >> I've opened https://trac.sagemath.org/ticket/29016 >> >> >> >> to deal with R being hard to clean away - feel free to try it. >> >> >> >> >> >> >> >> Maybe you also need to run >> >> >> >> >> >> >> >> make r-clean >> >> >> > >> >> >> > >> >> >> > I did that, it says that there is no legacy uninstaller for r, >> and that there is nothing to do. I checked for the files in the ticket, >> but none of them exists. :-( >> >> >> > >> >> >> > The config.log contains the lines >> >> >> > >> >> >> > configure:18950: checking installing any of atlas openblas iconv >> readline bzip2 xz pcre curl? >> >> >> > configure:18954: result: yes; install r as well >> >> >> > >> >> >> > but I do not know how to find out which of those (atlas openblas >> iconv readline bzip2 xz pcre curl) is the problem. >> >> >> >> >> >> The easiest is to look at the output of ./configure >> >> >> It should contain lines like >> >> >> >> >> >> atlas-3.10.2.p3 will not be installed (configure check) >> >> >> >> >> >> for each of the packages in that list. >> >> >> So for any of these that are not marked this way, please install >> the >> >> >> corresponding system package >> >> >> and re-run configure. >> >> >> >> >> >> >> >> >> >> >> >> > >> >> >> > Martin >> >> >> > >> >> >> > -- >> >> >> > You received this message because you are subscribed to the >> Google Groups "sage-release" group. >> >> >> > To unsubscribe from this group and stop receiving emails from it, >> send an email to sage-r...@googlegroups.com. >> >> >> > To view this discussion on the web visit >> https://groups.google.com/d/msgid/sage-release/5d105000-cea2-48a5-8840-aeb405a6cb71%40googlegroups.com. >> >> >> >> > >> >> > -- >> >> > You received this message because you are subscribed to the Google >> Groups "sage-release" group. >> >> > To unsubscribe from this group and stop receiving emails from it, >> send an email to sage-r...@googlegroups.com. >> >> > To view this discussion on the web visit >> https://groups.google.com/d/msgid/sage-release/ca07b5bd-8fe6-4383-ad3a-eab749b3760e%40googlegroups.com. >> >> >>
Re: [sage-release] Re: Sage 9.1.beta0 released
BINGO!!! Many many many thanks! Martin Am Mittwoch, 15. Januar 2020 14:00:29 UTC+1 schrieb Dima Pasechnik: > > Note that you need to uninstall bzip2, xz, pcre, readline, curl before > the corresponding system > versions are picked up by ./configure (of course all this is not > needed for fresh builds...) > > if this does not help please post config.log > > On Wed, Jan 15, 2020 at 12:53 PM 'Martin R' via sage-release > > wrote: > > > > > > > > Am Mittwoch, 15. Januar 2020 13:23:17 UTC+1 schrieb Dima Pasechnik: > >> > >> On Wed, Jan 15, 2020 at 12:13 PM 'Martin R' via sage-release > >> wrote: > >> > > >> > Oh dea, this is becoming strange: > >> > > >> > The output of configure says that > >> > > >> > atlas, openblas, iconv will NOT be installed, but > >> > > >> > bzip2-1.0.6-20150304.p0 > >> > readline-6.3.008.p0 > >> > xz-5.2.2.p0 > >> > pcre-8.40.p2 > >> > curl-7.62.0.p0 > >> > > >> > However, I certainly have bzip2, xz, pcre and curl on my system, and > I guess also readline. > >> > > >> > Might there be a bug in configure? > >> > >> You need development versions of these, see > >> > https://doc.sagemath.org/html/en/installation/source.html#linux-recommended-installation > > >> > >> So, on Ubuntu: > >> > >> libbz2-dev > >> libreadline-dev (seems to be missing in docs) > >> liblzma-dev (this is the xz lib, iirc) > >> libpcre3-dev > >> libcurl4-openssl-dev > > > > > >> > >> the last of these, libcurl4-openssl-dev was indeed missing, but > configure still wants to build r :-( > > > > > > Martin > >> > >> > >> > >> > > >> > Martin > >> > > >> > Am Mittwoch, 15. Januar 2020 13:00:51 UTC+1 schrieb Dima Pasechnik: > >> >> > >> >> On Wed, Jan 15, 2020 at 11:35 AM 'Martin R' via sage-release > >> >> wrote: > >> >> > > >> >> > Am Mittwoch, 15. Januar 2020 12:02:30 UTC+1 schrieb Dima > Pasechnik: > >> >> >> > >> >> >> On Wed, Jan 15, 2020 at 10:37 AM 'Martin R' via sage-release > >> >> >> wrote: > >> >> >> > > >> >> >> > Thanks again! It still tries to build R and fails > >> >> >> > > >> >> >> > I checked that system R starts, it does (R version 3.4.4) > >> >> >> Please also make sure that > >> >> >> > >> >> >> pkg-config --modversion libR > >> >> >> > >> >> >> outputs the version. > >> >> >> > >> >> > Yes, it does. > >> >> > > >> >> >> > >> >> >> However there is just no "checking for R" message in your > config.log, > >> >> >> it indicates that there are still remains of R left > >> >> >> in your installation. > >> >> >> > >> >> >> I've opened https://trac.sagemath.org/ticket/29016 > >> >> >> to deal with R being hard to clean away - feel free to try it. > >> >> >> > >> >> >> Maybe you also need to run > >> >> >> > >> >> >> make r-clean > >> >> > > >> >> > > >> >> > I did that, it says that there is no legacy uninstaller for r, and > that there is nothing to do. I checked for the files in the ticket, but > none of them exists. :-( > >> >> > > >> >> > The config.log contains the lines > >> >> > > >> >> > configure:18950: checking installing any of atlas openblas iconv > readline bzip2 xz pcre curl? > >> >> > configure:18954: result: yes; install r as well > >> >> > > >> >> > but I do not know how to find out which of those (atlas openblas > iconv readline bzip2 xz pcre curl) is the problem. > >> >> > >> >> The easiest is to look at the output of ./configure > >> >> It should contain lines like > >> >> > >> >> atlas-3.10.2.p3 will not be installed (configure check) > >> >> > >> >> for each of the packages in that list. > >> >> So for any of these that are not marked this way, please install the > >> >> corresponding system package > >> >> and re-run configure. > >> >> > >> >> > >> >> > >> >> > > >> >> > Martin > >> >> > > >> >> > -- > >> >> > You received this message because you are subscribed to the Google > Groups "sage-release" group. > >> >> > To unsubscribe from this group and stop receiving emails from it, > send an email to sage-r...@googlegroups.com. > >> >> > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-release/5d105000-cea2-48a5-8840-aeb405a6cb71%40googlegroups.com. > > > >> > > >> > -- > >> > You received this message because you are subscribed to the Google > Groups "sage-release" group. > >> > To unsubscribe from this group and stop receiving emails from it, > send an email to sage-r...@googlegroups.com. > >> > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-release/ca07b5bd-8fe6-4383-ad3a-eab749b3760e%40googlegroups.com. > > > > > > -- > > You received this message because you are subscribed to the Google > Groups "sage-release" group. > > To unsubscribe from this group and stop receiving emails from it, send > an email to sage-r...@googlegroups.com . > > To view this discussion on the web visit >
Re: [sage-release] Re: Sage 9.1.beta0 released
Note that you need to uninstall bzip2, xz, pcre, readline, curl before the corresponding system versions are picked up by ./configure (of course all this is not needed for fresh builds...) if this does not help please post config.log On Wed, Jan 15, 2020 at 12:53 PM 'Martin R' via sage-release wrote: > > > > Am Mittwoch, 15. Januar 2020 13:23:17 UTC+1 schrieb Dima Pasechnik: >> >> On Wed, Jan 15, 2020 at 12:13 PM 'Martin R' via sage-release >> wrote: >> > >> > Oh dea, this is becoming strange: >> > >> > The output of configure says that >> > >> > atlas, openblas, iconv will NOT be installed, but >> > >> > bzip2-1.0.6-20150304.p0 >> > readline-6.3.008.p0 >> > xz-5.2.2.p0 >> > pcre-8.40.p2 >> > curl-7.62.0.p0 >> > >> > However, I certainly have bzip2, xz, pcre and curl on my system, and I >> > guess also readline. >> > >> > Might there be a bug in configure? >> >> You need development versions of these, see >> https://doc.sagemath.org/html/en/installation/source.html#linux-recommended-installation >> >> So, on Ubuntu: >> >> libbz2-dev >> libreadline-dev (seems to be missing in docs) >> liblzma-dev (this is the xz lib, iirc) >> libpcre3-dev >> libcurl4-openssl-dev > > >> >> the last of these, libcurl4-openssl-dev was indeed missing, but configure >> still wants to build r :-( > > > Martin >> >> >> >> > >> > Martin >> > >> > Am Mittwoch, 15. Januar 2020 13:00:51 UTC+1 schrieb Dima Pasechnik: >> >> >> >> On Wed, Jan 15, 2020 at 11:35 AM 'Martin R' via sage-release >> >> wrote: >> >> > >> >> > Am Mittwoch, 15. Januar 2020 12:02:30 UTC+1 schrieb Dima Pasechnik: >> >> >> >> >> >> On Wed, Jan 15, 2020 at 10:37 AM 'Martin R' via sage-release >> >> >> wrote: >> >> >> > >> >> >> > Thanks again! It still tries to build R and fails >> >> >> > >> >> >> > I checked that system R starts, it does (R version 3.4.4) >> >> >> Please also make sure that >> >> >> >> >> >> pkg-config --modversion libR >> >> >> >> >> >> outputs the version. >> >> >> >> >> > Yes, it does. >> >> > >> >> >> >> >> >> However there is just no "checking for R" message in your config.log, >> >> >> it indicates that there are still remains of R left >> >> >> in your installation. >> >> >> >> >> >> I've opened https://trac.sagemath.org/ticket/29016 >> >> >> to deal with R being hard to clean away - feel free to try it. >> >> >> >> >> >> Maybe you also need to run >> >> >> >> >> >> make r-clean >> >> > >> >> > >> >> > I did that, it says that there is no legacy uninstaller for r, and that >> >> > there is nothing to do. I checked for the files in the ticket, but >> >> > none of them exists. :-( >> >> > >> >> > The config.log contains the lines >> >> > >> >> > configure:18950: checking installing any of atlas openblas iconv >> >> > readline bzip2 xz pcre curl? >> >> > configure:18954: result: yes; install r as well >> >> > >> >> > but I do not know how to find out which of those (atlas openblas iconv >> >> > readline bzip2 xz pcre curl) is the problem. >> >> >> >> The easiest is to look at the output of ./configure >> >> It should contain lines like >> >> >> >> atlas-3.10.2.p3 will not be installed (configure check) >> >> >> >> for each of the packages in that list. >> >> So for any of these that are not marked this way, please install the >> >> corresponding system package >> >> and re-run configure. >> >> >> >> >> >> >> >> > >> >> > Martin >> >> > >> >> > -- >> >> > You received this message because you are subscribed to the Google >> >> > Groups "sage-release" group. >> >> > To unsubscribe from this group and stop receiving emails from it, send >> >> > an email to sage-r...@googlegroups.com. >> >> > To view this discussion on the web visit >> >> > https://groups.google.com/d/msgid/sage-release/5d105000-cea2-48a5-8840-aeb405a6cb71%40googlegroups.com. >> > >> > -- >> > You received this message because you are subscribed to the Google Groups >> > "sage-release" group. >> > To unsubscribe from this group and stop receiving emails from it, send an >> > email to sage-r...@googlegroups.com. >> > To view this discussion on the web visit >> > https://groups.google.com/d/msgid/sage-release/ca07b5bd-8fe6-4383-ad3a-eab749b3760e%40googlegroups.com. > > -- > You received this message because you are subscribed to the Google Groups > "sage-release" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-release+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-release/a2512246-f441-4ace-82df-fd1f354bcaf5%40googlegroups.com. -- You received this message because you are subscribed to the Google Groups "sage-release" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-release+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-release/CAAWYfq2u6ZH1zEZGcpP%2BcjgCMoq9iZGjyPvf96g7kJAa7O_A0w%40mail.gmail.com.
Re: [sage-release] Re: Sage 9.1.beta0 released
Am Mittwoch, 15. Januar 2020 13:23:17 UTC+1 schrieb Dima Pasechnik: > > On Wed, Jan 15, 2020 at 12:13 PM 'Martin R' via sage-release > > wrote: > > > > Oh dea, this is becoming strange: > > > > The output of configure says that > > > > atlas, openblas, iconv will NOT be installed, but > > > > bzip2-1.0.6-20150304.p0 > > readline-6.3.008.p0 > > xz-5.2.2.p0 > > pcre-8.40.p2 > > curl-7.62.0.p0 > > > > However, I certainly have bzip2, xz, pcre and curl on my system, and I > guess also readline. > > > > Might there be a bug in configure? > > You need development versions of these, see > > https://doc.sagemath.org/html/en/installation/source.html#linux-recommended-installation > > > So, on Ubuntu: > > libbz2-dev > libreadline-dev (seems to be missing in docs) > liblzma-dev (this is the xz lib, iirc) > libpcre3-dev > libcurl4-openssl-dev > the last of these, libcurl4-openssl-dev was indeed missing, but configure > still wants to build r :-( Martin > > > > > > Martin > > > > Am Mittwoch, 15. Januar 2020 13:00:51 UTC+1 schrieb Dima Pasechnik: > >> > >> On Wed, Jan 15, 2020 at 11:35 AM 'Martin R' via sage-release > >> wrote: > >> > > >> > Am Mittwoch, 15. Januar 2020 12:02:30 UTC+1 schrieb Dima Pasechnik: > >> >> > >> >> On Wed, Jan 15, 2020 at 10:37 AM 'Martin R' via sage-release > >> >> wrote: > >> >> > > >> >> > Thanks again! It still tries to build R and fails > >> >> > > >> >> > I checked that system R starts, it does (R version 3.4.4) > >> >> Please also make sure that > >> >> > >> >> pkg-config --modversion libR > >> >> > >> >> outputs the version. > >> >> > >> > Yes, it does. > >> > > >> >> > >> >> However there is just no "checking for R" message in your > config.log, > >> >> it indicates that there are still remains of R left > >> >> in your installation. > >> >> > >> >> I've opened https://trac.sagemath.org/ticket/29016 > >> >> to deal with R being hard to clean away - feel free to try it. > >> >> > >> >> Maybe you also need to run > >> >> > >> >> make r-clean > >> > > >> > > >> > I did that, it says that there is no legacy uninstaller for r, and > that there is nothing to do. I checked for the files in the ticket, but > none of them exists. :-( > >> > > >> > The config.log contains the lines > >> > > >> > configure:18950: checking installing any of atlas openblas iconv > readline bzip2 xz pcre curl? > >> > configure:18954: result: yes; install r as well > >> > > >> > but I do not know how to find out which of those (atlas openblas > iconv readline bzip2 xz pcre curl) is the problem. > >> > >> The easiest is to look at the output of ./configure > >> It should contain lines like > >> > >> atlas-3.10.2.p3 will not be installed (configure check) > >> > >> for each of the packages in that list. > >> So for any of these that are not marked this way, please install the > >> corresponding system package > >> and re-run configure. > >> > >> > >> > >> > > >> > Martin > >> > > >> > -- > >> > You received this message because you are subscribed to the Google > Groups "sage-release" group. > >> > To unsubscribe from this group and stop receiving emails from it, > send an email to sage-r...@googlegroups.com. > >> > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-release/5d105000-cea2-48a5-8840-aeb405a6cb71%40googlegroups.com. > > > > > > -- > > You received this message because you are subscribed to the Google > Groups "sage-release" group. > > To unsubscribe from this group and stop receiving emails from it, send > an email to sage-r...@googlegroups.com . > > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-release/ca07b5bd-8fe6-4383-ad3a-eab749b3760e%40googlegroups.com. > > > -- You received this message because you are subscribed to the Google Groups "sage-release" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-release+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-release/a2512246-f441-4ace-82df-fd1f354bcaf5%40googlegroups.com.
Re: [sage-release] Re: Sage 9.1.beta0 released
On Wed, Jan 15, 2020 at 12:13 PM 'Martin R' via sage-release wrote: > > Oh dea, this is becoming strange: > > The output of configure says that > > atlas, openblas, iconv will NOT be installed, but > > bzip2-1.0.6-20150304.p0 > readline-6.3.008.p0 > xz-5.2.2.p0 > pcre-8.40.p2 > curl-7.62.0.p0 > > However, I certainly have bzip2, xz, pcre and curl on my system, and I guess > also readline. > > Might there be a bug in configure? You need development versions of these, see https://doc.sagemath.org/html/en/installation/source.html#linux-recommended-installation So, on Ubuntu: libbz2-dev libreadline-dev (seems to be missing in docs) liblzma-dev (this is the xz lib, iirc) libpcre3-dev libcurl4-openssl-dev > > Martin > > Am Mittwoch, 15. Januar 2020 13:00:51 UTC+1 schrieb Dima Pasechnik: >> >> On Wed, Jan 15, 2020 at 11:35 AM 'Martin R' via sage-release >> wrote: >> > >> > Am Mittwoch, 15. Januar 2020 12:02:30 UTC+1 schrieb Dima Pasechnik: >> >> >> >> On Wed, Jan 15, 2020 at 10:37 AM 'Martin R' via sage-release >> >> wrote: >> >> > >> >> > Thanks again! It still tries to build R and fails >> >> > >> >> > I checked that system R starts, it does (R version 3.4.4) >> >> Please also make sure that >> >> >> >> pkg-config --modversion libR >> >> >> >> outputs the version. >> >> >> > Yes, it does. >> > >> >> >> >> However there is just no "checking for R" message in your config.log, >> >> it indicates that there are still remains of R left >> >> in your installation. >> >> >> >> I've opened https://trac.sagemath.org/ticket/29016 >> >> to deal with R being hard to clean away - feel free to try it. >> >> >> >> Maybe you also need to run >> >> >> >> make r-clean >> > >> > >> > I did that, it says that there is no legacy uninstaller for r, and that >> > there is nothing to do. I checked for the files in the ticket, but none >> > of them exists. :-( >> > >> > The config.log contains the lines >> > >> > configure:18950: checking installing any of atlas openblas iconv readline >> > bzip2 xz pcre curl? >> > configure:18954: result: yes; install r as well >> > >> > but I do not know how to find out which of those (atlas openblas iconv >> > readline bzip2 xz pcre curl) is the problem. >> >> The easiest is to look at the output of ./configure >> It should contain lines like >> >> atlas-3.10.2.p3 will not be installed (configure check) >> >> for each of the packages in that list. >> So for any of these that are not marked this way, please install the >> corresponding system package >> and re-run configure. >> >> >> >> > >> > Martin >> > >> > -- >> > You received this message because you are subscribed to the Google Groups >> > "sage-release" group. >> > To unsubscribe from this group and stop receiving emails from it, send an >> > email to sage-r...@googlegroups.com. >> > To view this discussion on the web visit >> > https://groups.google.com/d/msgid/sage-release/5d105000-cea2-48a5-8840-aeb405a6cb71%40googlegroups.com. > > -- > You received this message because you are subscribed to the Google Groups > "sage-release" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-release+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-release/ca07b5bd-8fe6-4383-ad3a-eab749b3760e%40googlegroups.com. -- You received this message because you are subscribed to the Google Groups "sage-release" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-release+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-release/CAAWYfq0NkisLvB%2B7fq5eks-js239wvgRw8Kb1WhMMrZVrn-MgA%40mail.gmail.com.
Re: [sage-release] Re: Sage 9.1.beta0 released
Oh dea, this is becoming strange: The output of configure says that atlas, openblas, iconv will NOT be installed, but bzip2-1.0.6-20150304.p0 readline-6.3.008.p0 xz-5.2.2.p0 pcre-8.40.p2 curl-7.62.0.p0 However, I certainly have bzip2, xz, pcre and curl on my system, and I guess also readline. Might there be a bug in configure? Martin Am Mittwoch, 15. Januar 2020 13:00:51 UTC+1 schrieb Dima Pasechnik: > > On Wed, Jan 15, 2020 at 11:35 AM 'Martin R' via sage-release > > wrote: > > > > Am Mittwoch, 15. Januar 2020 12:02:30 UTC+1 schrieb Dima Pasechnik: > >> > >> On Wed, Jan 15, 2020 at 10:37 AM 'Martin R' via sage-release > >> wrote: > >> > > >> > Thanks again! It still tries to build R and fails > >> > > >> > I checked that system R starts, it does (R version 3.4.4) > >> Please also make sure that > >> > >> pkg-config --modversion libR > >> > >> outputs the version. > >> > > Yes, it does. > > > >> > >> However there is just no "checking for R" message in your config.log, > >> it indicates that there are still remains of R left > >> in your installation. > >> > >> I've opened https://trac.sagemath.org/ticket/29016 > >> to deal with R being hard to clean away - feel free to try it. > >> > >> Maybe you also need to run > >> > >> make r-clean > > > > > > I did that, it says that there is no legacy uninstaller for r, and that > there is nothing to do. I checked for the files in the ticket, but none of > them exists. :-( > > > > The config.log contains the lines > > > > configure:18950: checking installing any of atlas openblas iconv > readline bzip2 xz pcre curl? > > configure:18954: result: yes; install r as well > > > > but I do not know how to find out which of those (atlas openblas iconv > readline bzip2 xz pcre curl) is the problem. > > The easiest is to look at the output of ./configure > It should contain lines like > > atlas-3.10.2.p3 will not be installed (configure check) > > for each of the packages in that list. > So for any of these that are not marked this way, please install the > corresponding system package > and re-run configure. > > > > > > > Martin > > > > -- > > You received this message because you are subscribed to the Google > Groups "sage-release" group. > > To unsubscribe from this group and stop receiving emails from it, send > an email to sage-r...@googlegroups.com . > > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-release/5d105000-cea2-48a5-8840-aeb405a6cb71%40googlegroups.com. > > > -- You received this message because you are subscribed to the Google Groups "sage-release" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-release+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-release/ca07b5bd-8fe6-4383-ad3a-eab749b3760e%40googlegroups.com.
Re: [sage-release] Re: Sage 9.1.beta0 released
On Wed, Jan 15, 2020 at 11:35 AM 'Martin R' via sage-release wrote: > > Am Mittwoch, 15. Januar 2020 12:02:30 UTC+1 schrieb Dima Pasechnik: >> >> On Wed, Jan 15, 2020 at 10:37 AM 'Martin R' via sage-release >> wrote: >> > >> > Thanks again! It still tries to build R and fails >> > >> > I checked that system R starts, it does (R version 3.4.4) >> Please also make sure that >> >> pkg-config --modversion libR >> >> outputs the version. >> > Yes, it does. > >> >> However there is just no "checking for R" message in your config.log, >> it indicates that there are still remains of R left >> in your installation. >> >> I've opened https://trac.sagemath.org/ticket/29016 >> to deal with R being hard to clean away - feel free to try it. >> >> Maybe you also need to run >> >> make r-clean > > > I did that, it says that there is no legacy uninstaller for r, and that there > is nothing to do. I checked for the files in the ticket, but none of them > exists. :-( > > The config.log contains the lines > > configure:18950: checking installing any of atlas openblas iconv readline > bzip2 xz pcre curl? > configure:18954: result: yes; install r as well > > but I do not know how to find out which of those (atlas openblas iconv > readline bzip2 xz pcre curl) is the problem. The easiest is to look at the output of ./configure It should contain lines like atlas-3.10.2.p3 will not be installed (configure check) for each of the packages in that list. So for any of these that are not marked this way, please install the corresponding system package and re-run configure. > > Martin > > -- > You received this message because you are subscribed to the Google Groups > "sage-release" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-release+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-release/5d105000-cea2-48a5-8840-aeb405a6cb71%40googlegroups.com. -- You received this message because you are subscribed to the Google Groups "sage-release" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-release+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-release/CAAWYfq3R4b7cbfZtdTD4-zUu28dVJ-AmDx1f9kWnmQzdBnoDUQ%40mail.gmail.com.
Re: [sage-release] Re: Sage 9.1.beta0 released
Am Mittwoch, 15. Januar 2020 12:02:30 UTC+1 schrieb Dima Pasechnik: > > On Wed, Jan 15, 2020 at 10:37 AM 'Martin R' via sage-release > > wrote: > > > > Thanks again! It still tries to build R and fails > > > > I checked that system R starts, it does (R version 3.4.4) > Please also make sure that > > pkg-config --modversion libR > > outputs the version. > > Yes, it does. > However there is just no "checking for R" message in your config.log, > it indicates that there are still remains of R left > in your installation. > > I've opened https://trac.sagemath.org/ticket/29016 > to deal with R being hard to clean away - feel free to try it. > > Maybe you also need to run > > make r-clean > I did that, it says that there is no legacy uninstaller for r, and that there is nothing to do. I checked for the files in the ticket, but none of them exists. :-( The config.log contains the lines configure:18950: checking installing any of atlas openblas iconv readline bzip2 xz pcre curl? configure:18954: result: yes; install r as well but I do not know how to find out which of those (atlas openblas iconv readline bzip2 xz pcre curl) is the problem. Martin -- You received this message because you are subscribed to the Google Groups "sage-release" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-release+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-release/5d105000-cea2-48a5-8840-aeb405a6cb71%40googlegroups.com.
Re: [sage-release] Re: Sage 9.1.beta0 released
On Wed, Jan 15, 2020 at 10:37 AM 'Martin R' via sage-release wrote: > > Thanks again! It still tries to build R and fails > > I checked that system R starts, it does (R version 3.4.4) Please also make sure that pkg-config --modversion libR outputs the version. However there is just no "checking for R" message in your config.log, it indicates that there are still remains of R left in your installation. I've opened https://trac.sagemath.org/ticket/29016 to deal with R being hard to clean away - feel free to try it. Maybe you also need to run make r-clean > > The new config.log is attached. > > Sorry and thank you! > > Am Mittwoch, 15. Januar 2020 11:13:09 UTC+1 schrieb Dima Pasechnik: >> >> It seems you have remains of an old R installation in local/ >> So you need >> rm -rf local/lib/R >> rm local/bin/R* >> >> and then re-run ./configure >> >> (details ar in https://trac.sagemath.org/ticket/28884) >> >> >> On Wed, Jan 15, 2020 at 10:01 AM 'Martin R' via sage-release >> wrote: >> > >> > Many thanks for your help - unfortunately it didn't work though. >> > >> > I am attaching the new config.log >> > >> > Martin >> > >> > Am Mittwoch, 15. Januar 2020 10:19:35 UTC+1 schrieb Dima Pasechnik: >> >> >> >> On Wed, Jan 15, 2020 at 9:12 AM 'Martin R' via sage-release >> >> wrote: >> >> > >> >> > Dear all, >> >> > >> >> > I have a problem with r-3.6.2 in 9.1.beta0 in an python2 build >> >> > (incremental from a relatiively recent release, but I don't remember >> >> > which) on Ubuntu 18.04.3, and I have absolutely no clue. The last bit >> >> > oortunatf the error message is >> >> > >> >> The R problem is known, and related to recent gfortran releases. >> >> https://developer.r-project.org/Blog/public/2019/05/15/gfortran-issues-with-lapack/ >> >> >> >> You might instead install openblas and R from the system, they should >> >> be recognised. >> >> (also gsl, cliquer, so, for Ubuntu, `apt-get libopenblas-dev >> >> r-base-dev libgsl-dev libcliquer-dev cliquer`) >> >> as well as `make openblas-clean gsl-clean cliquer-clean` >> >> before ./configure && make build >> >> >> >> >> >> >> >> > [r-3.6.2] ../../Makeconf:124: recipe for target 'integrate.o' failed >> >> > [r-3.6.2] make[7]: *** [integrate.o] Error 1 >> >> > >> >> > sage starts and is otherwise usable. >> >> > >> >> > The log is attached. It would be great if I could avoid rebuilding all >> >> > of sage, because this is an old laptop... >> >> > >> >> > Many many thanks, >> >> > >> >> > Martin >> >> > >> >> > -- >> >> > You received this message because you are subscribed to the Google >> >> > Groups "sage-release" group. >> >> > To unsubscribe from this group and stop receiving emails from it, send >> >> > an email to sage-r...@googlegroups.com. >> >> > To view this discussion on the web visit >> >> > https://groups.google.com/d/msgid/sage-release/0c30ee50-2f00-4ec2-88cd-05ac3cb282b0%40googlegroups.com. >> > >> > -- >> > You received this message because you are subscribed to the Google Groups >> > "sage-release" group. >> > To unsubscribe from this group and stop receiving emails from it, send an >> > email to sage-r...@googlegroups.com. >> > To view this discussion on the web visit >> > https://groups.google.com/d/msgid/sage-release/a6968f7e-4e2f-49db-98a7-881d07d98b79%40googlegroups.com. > > -- > You received this message because you are subscribed to the Google Groups > "sage-release" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-release+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-release/b3ac82ee-13d4-4a8b-8b16-9dd6b2aa8014%40googlegroups.com. -- You received this message because you are subscribed to the Google Groups "sage-release" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-release+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-release/CAAWYfq1o30_pgTbYKkxnSv9SU86rwtE9cjQPnAtANSwWCJD1BQ%40mail.gmail.com.
Re: [sage-release] Re: Sage 9.1.beta0 released
Thanks again! It still tries to build R and fails I checked that system R starts, it does (R version 3.4.4) The new config.log is attached. Sorry and thank you! Am Mittwoch, 15. Januar 2020 11:13:09 UTC+1 schrieb Dima Pasechnik: > > It seems you have remains of an old R installation in local/ > So you need > rm -rf local/lib/R > rm local/bin/R* > > and then re-run ./configure > > (details ar in https://trac.sagemath.org/ticket/28884) > > > On Wed, Jan 15, 2020 at 10:01 AM 'Martin R' via sage-release > > wrote: > > > > Many thanks for your help - unfortunately it didn't work though. > > > > I am attaching the new config.log > > > > Martin > > > > Am Mittwoch, 15. Januar 2020 10:19:35 UTC+1 schrieb Dima Pasechnik: > >> > >> On Wed, Jan 15, 2020 at 9:12 AM 'Martin R' via sage-release > >> wrote: > >> > > >> > Dear all, > >> > > >> > I have a problem with r-3.6.2 in 9.1.beta0 in an python2 build > (incremental from a relatiively recent release, but I don't remember which) > on Ubuntu 18.04.3, and I have absolutely no clue. The last bit oortunatf > the error message is > >> > > >> The R problem is known, and related to recent gfortran releases. > >> > https://developer.r-project.org/Blog/public/2019/05/15/gfortran-issues-with-lapack/ > > >> > >> You might instead install openblas and R from the system, they should > >> be recognised. > >> (also gsl, cliquer, so, for Ubuntu, `apt-get libopenblas-dev > >> r-base-dev libgsl-dev libcliquer-dev cliquer`) > >> as well as `make openblas-clean gsl-clean cliquer-clean` > >> before ./configure && make build > >> > >> > >> > >> > [r-3.6.2] ../../Makeconf:124: recipe for target 'integrate.o' failed > >> > [r-3.6.2] make[7]: *** [integrate.o] Error 1 > >> > > >> > sage starts and is otherwise usable. > >> > > >> > The log is attached. It would be great if I could avoid rebuilding > all of sage, because this is an old laptop... > >> > > >> > Many many thanks, > >> > > >> > Martin > >> > > >> > -- > >> > You received this message because you are subscribed to the Google > Groups "sage-release" group. > >> > To unsubscribe from this group and stop receiving emails from it, > send an email to sage-r...@googlegroups.com. > >> > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-release/0c30ee50-2f00-4ec2-88cd-05ac3cb282b0%40googlegroups.com. > > > > > > -- > > You received this message because you are subscribed to the Google > Groups "sage-release" group. > > To unsubscribe from this group and stop receiving emails from it, send > an email to sage-r...@googlegroups.com . > > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-release/a6968f7e-4e2f-49db-98a7-881d07d98b79%40googlegroups.com. > > > -- You received this message because you are subscribed to the Google Groups "sage-release" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-release+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-release/b3ac82ee-13d4-4a8b-8b16-9dd6b2aa8014%40googlegroups.com. This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by Sage configure 9.1.beta0, which was generated by GNU Autoconf 2.69. Invocation command line was $ ./configure --with-python=2 ## - ## ## Platform. ## ## - ## hostname = Martin-Laptop uname -m = x86_64 uname -r = 4.15.0-74-generic uname -s = Linux uname -v = #84-Ubuntu SMP Thu Dec 19 08:06:28 UTC 2019 /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = unknown /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /home/martin/bin PATH: /usr/local/sbin PATH: /usr/local/bin PATH: /usr/sbin PATH: /usr/bin PATH: /sbin PATH: /bin PATH: /usr/games PATH: /usr/local/games PATH: /snap/bin ## --- ## ## Core tests. ## ## --- ## configure:3148: checking for a BSD-compatible install configure:3216: result: /usr/bin/install -c configure:3227: checking whether build environment is sane configure:3282: result: yes configure:3433: checking for a thread-safe mkdir -p configure:3472: result: /bin/mkdir -p configure:3479: checking for gawk configure:3495: found /usr/bin/gawk configure:3506: result: gawk configure:3517: checking whether make sets $(MAKE) configure:3539: result: yes configure:3568: checking whether make supports nested variables configure:3585: result: yes configure:3714: checking whether to enable maintainer-specific portions of Makefiles configure:3723: result: yes configure:3774: checking for root user configure:3783: result: no configure:3795: checking build system type configure:3809: result: x86_64-pc-linux-gnu
Re: [sage-release] Re: Sage 9.1.beta0 released
It seems you have remains of an old R installation in local/ So you need rm -rf local/lib/R rm local/bin/R* and then re-run ./configure (details ar in https://trac.sagemath.org/ticket/28884) On Wed, Jan 15, 2020 at 10:01 AM 'Martin R' via sage-release wrote: > > Many thanks for your help - unfortunately it didn't work though. > > I am attaching the new config.log > > Martin > > Am Mittwoch, 15. Januar 2020 10:19:35 UTC+1 schrieb Dima Pasechnik: >> >> On Wed, Jan 15, 2020 at 9:12 AM 'Martin R' via sage-release >> wrote: >> > >> > Dear all, >> > >> > I have a problem with r-3.6.2 in 9.1.beta0 in an python2 build >> > (incremental from a relatiively recent release, but I don't remember >> > which) on Ubuntu 18.04.3, and I have absolutely no clue. The last bit >> > oortunatf the error message is >> > >> The R problem is known, and related to recent gfortran releases. >> https://developer.r-project.org/Blog/public/2019/05/15/gfortran-issues-with-lapack/ >> >> You might instead install openblas and R from the system, they should >> be recognised. >> (also gsl, cliquer, so, for Ubuntu, `apt-get libopenblas-dev >> r-base-dev libgsl-dev libcliquer-dev cliquer`) >> as well as `make openblas-clean gsl-clean cliquer-clean` >> before ./configure && make build >> >> >> >> > [r-3.6.2] ../../Makeconf:124: recipe for target 'integrate.o' failed >> > [r-3.6.2] make[7]: *** [integrate.o] Error 1 >> > >> > sage starts and is otherwise usable. >> > >> > The log is attached. It would be great if I could avoid rebuilding all of >> > sage, because this is an old laptop... >> > >> > Many many thanks, >> > >> > Martin >> > >> > -- >> > You received this message because you are subscribed to the Google Groups >> > "sage-release" group. >> > To unsubscribe from this group and stop receiving emails from it, send an >> > email to sage-r...@googlegroups.com. >> > To view this discussion on the web visit >> > https://groups.google.com/d/msgid/sage-release/0c30ee50-2f00-4ec2-88cd-05ac3cb282b0%40googlegroups.com. > > -- > You received this message because you are subscribed to the Google Groups > "sage-release" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-release+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-release/a6968f7e-4e2f-49db-98a7-881d07d98b79%40googlegroups.com. -- You received this message because you are subscribed to the Google Groups "sage-release" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-release+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-release/CAAWYfq2niV8cHbof8QgmCL17GwDk-FHcx%2B4YqtwFe_Ddky0tzQ%40mail.gmail.com.
Re: [sage-release] Re: Sage 9.1.beta0 released
Many thanks for your help - unfortunately it didn't work though. I am attaching the new config.log Martin Am Mittwoch, 15. Januar 2020 10:19:35 UTC+1 schrieb Dima Pasechnik: > > On Wed, Jan 15, 2020 at 9:12 AM 'Martin R' via sage-release > > wrote: > > > > Dear all, > > > > I have a problem with r-3.6.2 in 9.1.beta0 in an python2 build > (incremental from a relatiively recent release, but I don't remember which) > on Ubuntu 18.04.3, and I have absolutely no clue. The last bit oortunatf > the error message is > > > The R problem is known, and related to recent gfortran releases. > > https://developer.r-project.org/Blog/public/2019/05/15/gfortran-issues-with-lapack/ > > > You might instead install openblas and R from the system, they should > be recognised. > (also gsl, cliquer, so, for Ubuntu, `apt-get libopenblas-dev > r-base-dev libgsl-dev libcliquer-dev cliquer`) > as well as `make openblas-clean gsl-clean cliquer-clean` > before ./configure && make build > > > > > [r-3.6.2] ../../Makeconf:124: recipe for target 'integrate.o' failed > > [r-3.6.2] make[7]: *** [integrate.o] Error 1 > > > > sage starts and is otherwise usable. > > > > The log is attached. It would be great if I could avoid rebuilding all > of sage, because this is an old laptop... > > > > Many many thanks, > > > > Martin > > > > -- > > You received this message because you are subscribed to the Google > Groups "sage-release" group. > > To unsubscribe from this group and stop receiving emails from it, send > an email to sage-r...@googlegroups.com . > > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-release/0c30ee50-2f00-4ec2-88cd-05ac3cb282b0%40googlegroups.com. > > > -- You received this message because you are subscribed to the Google Groups "sage-release" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-release+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-release/a6968f7e-4e2f-49db-98a7-881d07d98b79%40googlegroups.com. This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by Sage configure 9.1.beta0, which was generated by GNU Autoconf 2.69. Invocation command line was $ ./configure --with-python=2 ## - ## ## Platform. ## ## - ## hostname = Martin-Laptop uname -m = x86_64 uname -r = 4.15.0-74-generic uname -s = Linux uname -v = #84-Ubuntu SMP Thu Dec 19 08:06:28 UTC 2019 /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = unknown /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /home/martin/bin PATH: /usr/local/sbin PATH: /usr/local/bin PATH: /usr/sbin PATH: /usr/bin PATH: /sbin PATH: /bin PATH: /usr/games PATH: /usr/local/games PATH: /snap/bin ## --- ## ## Core tests. ## ## --- ## configure:3148: checking for a BSD-compatible install configure:3216: result: /usr/bin/install -c configure:3227: checking whether build environment is sane configure:3282: result: yes configure:3433: checking for a thread-safe mkdir -p configure:3472: result: /bin/mkdir -p configure:3479: checking for gawk configure:3495: found /usr/bin/gawk configure:3506: result: gawk configure:3517: checking whether make sets $(MAKE) configure:3539: result: yes configure:3568: checking whether make supports nested variables configure:3585: result: yes configure:3714: checking whether to enable maintainer-specific portions of Makefiles configure:3723: result: yes configure:3774: checking for root user configure:3783: result: no configure:3795: checking build system type configure:3809: result: x86_64-pc-linux-gnu configure:3829: checking host system type configure:3842: result: x86_64-pc-linux-gnu configure:3954: checking for a sed that does not truncate output configure:4018: result: /bin/sed configure:4026: checking for ar configure:4042: found /usr/bin/ar configure:4054: result: yes configure:4075: checking for m4 configure:4091: found /usr/bin/m4 configure:4103: result: yes configure:4178: checking for pkg-config configure:4196: found /usr/bin/pkg-config configure:4208: result: /usr/bin/pkg-config configure:4233: checking pkg-config is at least version 0.9.0 configure:4236: result: yes configure:4247: checking for ranlib configure:4263: found /usr/bin/ranlib configure:4275: result: yes configure:4296: checking for strip configure:4312: found /usr/bin/strip configure:4324: result: yes configure:4344: checking for GNU or BSD tar configure:4392: result: /bin/tar configure:4403: checking for GNU make configure:4445: result: /usr/bin/make configure:4459: checking for latex configure:4475: found /usr/bin/latex configure:4487: result: yes configure:4511: checking for perl
Re: [sage-release] Re: Sage 9.1.beta0 released
Thanks for the help. I upgraded devtoolset to 7, but it is still pkg-config 0.27.1 there. So that didn't help. Markus' suggestion solved it. Chris -- You received this message because you are subscribed to the Google Groups "sage-release" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-release+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-release/825eef3a-d263-42ee-8af1-1a591a5ff35d%40googlegroups.com.
Re: [sage-release] Re: Sage 9.1.beta0 released
On Wed, Jan 15, 2020 at 9:12 AM 'Martin R' via sage-release wrote: > > Dear all, > > I have a problem with r-3.6.2 in 9.1.beta0 in an python2 build (incremental > from a relatiively recent release, but I don't remember which) on Ubuntu > 18.04.3, and I have absolutely no clue. The last bit of the error message is > The R problem is known, and related to recent gfortran releases. https://developer.r-project.org/Blog/public/2019/05/15/gfortran-issues-with-lapack/ You might instead install openblas and R from the system, they should be recognised. (also gsl, cliquer, so, for Ubuntu, `apt-get libopenblas-dev r-base-dev libgsl-dev libcliquer-dev cliquer`) as well as `make openblas-clean gsl-clean cliquer-clean` before ./configure && make build > [r-3.6.2] ../../Makeconf:124: recipe for target 'integrate.o' failed > [r-3.6.2] make[7]: *** [integrate.o] Error 1 > > sage starts and is otherwise usable. > > The log is attached. It would be great if I could avoid rebuilding all of > sage, because this is an old laptop... > > Many many thanks, > > Martin > > -- > You received this message because you are subscribed to the Google Groups > "sage-release" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-release+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-release/0c30ee50-2f00-4ec2-88cd-05ac3cb282b0%40googlegroups.com. -- You received this message because you are subscribed to the Google Groups "sage-release" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-release+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-release/CAAWYfq2Ca_8SMznetQ%3DHimZ1_vMfxZrOZXtaY%3DrQYMHW9ZvpCA%40mail.gmail.com.
Re: [sage-release] Re: Sage 9.1.beta0 released
For now, `./bootstrap -D` can be used as a workaround for this problem. Am Dienstag, 14. Januar 2020 12:24:57 UTC+1 schrieb Dima Pasechnik: > > On Tue, Jan 14, 2020 at 10:57 AM chris wuthrich > > wrote: > > > > > > > > make build after pulling 9.1.beta0 produces an error below. I have no > problems compiling 9.0. > > This is on centos 7 with devtoolset-4 enabled. > > Sorry if this is noise produced by me making an error. Happy to provide > any other information. > > > > make -j4 build/make/Makefile --stop > > make[1]: Entering directory `/local/pmzcw/prog/sage' > > ./bootstrap -d > > make[2]: Entering directory `/local/pmzcw/prog/sage' > > rm -rf config configure build/make/Makefile-auto.in > > make[2]: Leaving directory `/local/pmzcw/prog/sage' > > bootstrap:69: installing 'config/config.rpath' > > configure.ac:113: installing 'config/config.guess' > > configure.ac:113: installing 'config/config.sub' > > configure.ac:68: installing 'config/install-sh' > > configure.ac:68: installing 'config/missing' > > configure.ac:453: error: possibly undefined macro: AC_CONFIG_COMMANDS > > If this token and others are legitimate, please use > m4_pattern_allow. > > See the Autoconf documentation. > > configure:10801: error: possibly undefined macro: PKG_CHECK_VAR > > configure:10802: error: possibly undefined macro: AC_CONFIG_LINKS > > configure:10807: error: possibly undefined macro: AC_MSG_WARN > > > > > > make dist-clean also fails with > > > > checking BLAS library... openblas > > ./configure: line 10801: syntax error near unexpected token > `OPENBLASPCDIR,' > > ./configure: line 10801: `PKG_CHECK_VAR(OPENBLASPCDIR, openblas, > pcfiledir,' > > If you would like to try to build Sage anyway (to help porting), > > export the variable 'SAGE_PORT' to something non-empty. > > make[1]: *** [build/make/Makefile] Error 1 > > make[1]: Leaving directory `/local/pmzcw/prog/sage' > > make: *** [dist-clean] Error 2 > > the latter is https://trac.sagemath.org/ticket/29001 > > (perhaps the former too, not sure) > > > > > > > Chris > > > > -- > > You received this message because you are subscribed to the Google > Groups "sage-release" group. > > To unsubscribe from this group and stop receiving emails from it, send > an email to sage-r...@googlegroups.com . > > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-release/6726a7ab-37c3-423d-bf28-1fd5e764e478%40googlegroups.com. > > > -- You received this message because you are subscribed to the Google Groups "sage-release" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-release+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-release/8f402173-93d9-46b1-9087-5e91be645100%40googlegroups.com.
Re: [sage-release] Re: Sage 9.1.beta0 released
On Tue, Jan 14, 2020 at 10:57 AM chris wuthrich wrote: > > > > make build after pulling 9.1.beta0 produces an error below. I have no > problems compiling 9.0. > This is on centos 7 with devtoolset-4 enabled. https://www.softwarecollections.org/en/scls/rhscl/devtoolset-4/ says that devtoolset-4 is officially dead, since Dec 2017. Can you move to something newer, e.g. devtoolset-7 ? > Sorry if this is noise produced by me making an error. Happy to provide any > other information. > > make -j4 build/make/Makefile --stop > make[1]: Entering directory `/local/pmzcw/prog/sage' > ./bootstrap -d > make[2]: Entering directory `/local/pmzcw/prog/sage' > rm -rf config configure build/make/Makefile-auto.in > make[2]: Leaving directory `/local/pmzcw/prog/sage' > bootstrap:69: installing 'config/config.rpath' > configure.ac:113: installing 'config/config.guess' > configure.ac:113: installing 'config/config.sub' > configure.ac:68: installing 'config/install-sh' > configure.ac:68: installing 'config/missing' > configure.ac:453: error: possibly undefined macro: AC_CONFIG_COMMANDS > If this token and others are legitimate, please use m4_pattern_allow. > See the Autoconf documentation. > configure:10801: error: possibly undefined macro: PKG_CHECK_VAR > configure:10802: error: possibly undefined macro: AC_CONFIG_LINKS > configure:10807: error: possibly undefined macro: AC_MSG_WARN > > > make dist-clean also fails with > > checking BLAS library... openblas > ./configure: line 10801: syntax error near unexpected token `OPENBLASPCDIR,' > ./configure: line 10801: `PKG_CHECK_VAR(OPENBLASPCDIR, openblas, > pcfiledir,' > If you would like to try to build Sage anyway (to help porting), > export the variable 'SAGE_PORT' to something non-empty. > make[1]: *** [build/make/Makefile] Error 1 > make[1]: Leaving directory `/local/pmzcw/prog/sage' > make: *** [dist-clean] Error 2 > > > Chris > > -- > You received this message because you are subscribed to the Google Groups > "sage-release" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-release+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-release/6726a7ab-37c3-423d-bf28-1fd5e764e478%40googlegroups.com. -- You received this message because you are subscribed to the Google Groups "sage-release" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-release+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-release/CAAWYfq3DteKrvJD2yiCmMFtrnuvngOCy9A_nRjWa3Jf1pptWAg%40mail.gmail.com.
Re: [sage-release] Re: Sage 9.1.beta0 released
On Tue, Jan 14, 2020 at 10:57 AM chris wuthrich wrote: > > > > make build after pulling 9.1.beta0 produces an error below. I have no > problems compiling 9.0. > This is on centos 7 with devtoolset-4 enabled. > Sorry if this is noise produced by me making an error. Happy to provide any > other information. > > make -j4 build/make/Makefile --stop > make[1]: Entering directory `/local/pmzcw/prog/sage' > ./bootstrap -d > make[2]: Entering directory `/local/pmzcw/prog/sage' > rm -rf config configure build/make/Makefile-auto.in > make[2]: Leaving directory `/local/pmzcw/prog/sage' > bootstrap:69: installing 'config/config.rpath' > configure.ac:113: installing 'config/config.guess' > configure.ac:113: installing 'config/config.sub' > configure.ac:68: installing 'config/install-sh' > configure.ac:68: installing 'config/missing' > configure.ac:453: error: possibly undefined macro: AC_CONFIG_COMMANDS > If this token and others are legitimate, please use m4_pattern_allow. > See the Autoconf documentation. > configure:10801: error: possibly undefined macro: PKG_CHECK_VAR > configure:10802: error: possibly undefined macro: AC_CONFIG_LINKS > configure:10807: error: possibly undefined macro: AC_MSG_WARN > > > make dist-clean also fails with > > checking BLAS library... openblas > ./configure: line 10801: syntax error near unexpected token `OPENBLASPCDIR,' > ./configure: line 10801: `PKG_CHECK_VAR(OPENBLASPCDIR, openblas, > pcfiledir,' > If you would like to try to build Sage anyway (to help porting), > export the variable 'SAGE_PORT' to something non-empty. > make[1]: *** [build/make/Makefile] Error 1 > make[1]: Leaving directory `/local/pmzcw/prog/sage' > make: *** [dist-clean] Error 2 the latter is https://trac.sagemath.org/ticket/29001 (perhaps the former too, not sure) > > > Chris > > -- > You received this message because you are subscribed to the Google Groups > "sage-release" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-release+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-release/6726a7ab-37c3-423d-bf28-1fd5e764e478%40googlegroups.com. -- You received this message because you are subscribed to the Google Groups "sage-release" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-release+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-release/CAAWYfq1%3DwAwCyDVroh0h%2BzTLjhz5OtDH%3DM987diiVoyQ%3DFsdBw%40mail.gmail.com.
