Hello,
In a Mac OSX 10.11.6 with Xcode 8.2.1, compiling sage 8.2.beta6 from
sources i get the error message below:
$ make
/Applications/Xcode.app/Contents/Developer/usr/bin/make build/make/Makefile
--stop
./bootstrap -d
rm -rf config configure build/make/Makefile-auto.in
configure.ac:390: installing 'config/compile'
configure.ac:105: installing 'config/config.guess'
configure.ac:105: installing 'config/config.sub'
configure.ac:68: installing 'config/install-sh'
configure.ac:68: installing 'config/missing'
rm -f config.log
mkdir -p logs/pkgs
ln -s logs/pkgs/config.log config.log
running CONFIG_SHELL=/bin/sh /bin/sh ./configure --no-create --no-recursion
checking for a BSD-compatible install...
/usr/local/opt/coreutils/libexec/gnubin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p...
/usr/local/opt/coreutils/libexec/gnubin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether to enable maintainer-specific portions of Makefiles... yes
checking for root user... no
checking build system type... x86_64-apple-darwin15.6.0
checking host system type... x86_64-apple-darwin15.6.0
checking for ar... yes
checking for m4... yes
checking for ranlib... yes
checking for strip... yes
checking for GNU or BSD tar... /usr/bin/tar
checking for GNU make... /usr/bin/make
checking for latex... yes
checking for perl... /usr/bin/perl
checking for Perl version 5.8.0 or later... yes
checking for git... /usr/bin/git
checking for yasm... no
dyld: Library not loaded: /usr/local/opt/mpfr/lib/libmpfr.4.dylib
Referenced from: /usr/local/bin/awk
Reason: image not found
local/bin/sage-env: line 339: [: -ge: unary operator expected
<built-in>: error: unknown value '10.-4' of -mmacosx-version-min
conftest.cpp:2:6: error: 'inf' does not name a type
auto inf = 1.0 / std::complex<double>();
^
configure: Installing GCC because installed g++ is broken
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking for style of include used by make... GNU
checking dependency style of gcc... none
checking how to run the C preprocessor... gcc -E
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... none
checking for gfortran... gfortran
checking whether we are using the GNU Fortran compiler... yes
checking whether gfortran accepts -g... yes
checking for C compiler vendor... clang
checking for gcc... gcc
checking whether we are using the GNU Objective C compiler... yes
checking whether gcc accepts -g... yes
checking dependency style of gcc... none
checking for g++... g++
checking whether we are using the GNU Objective C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... none
checking for curl 7.22... /usr/bin/curl
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking curl/curl.h usability... yes
checking curl/curl.h presence... yes
checking for curl/curl.h... yes
checking how to run the C++ preprocessor... g++ -E
checking complex.h usability... yes
checking complex.h presence... yes
checking for complex.h... yes
checking whether g++ supports C++11 features by default... no
checking whether g++ supports C++11 features with -std=gnu++11... yes
checking for gcc option to accept ISO C99... none needed
checking for Fortran flag needed to accept free-form source... -ffree-form
checking for sqrt in -lm... yes
***************************************************
***************************************************
You are using OS X Lion (or later).
You are strongly advised to install Apple's latest Xcode
unless you already have it. You can install this using
the App Store. Also, make sure you install Xcode's
Command Line Tools -- see Sage's README.txt.
configure: error: "found MacPorts in /opt/local/bin/port. Either:
(1) rename /opt/local and /sw, or
(2) change PATH and DYLD_LIBRARY_PATH
(Once Sage is built, you can restore them.)
If you would like to try to build Sage anyway (to help porting),
export the variable 'SAGE_PORT' to something non-empty.
make[1]: *** [build/make/Makefile] Error 1
make: *** [all] Error 2
I didn't really understand option (1) -- rename it to anything? Other
things won't break?
For (2), the environment variables are:
$ echo $DYLD_LIBRARY_PATH
/Users/forets/Tools/spaceex_src/sspaceex_local/lib/
$ echo $PATH
/opt/local/bin:/opt/local/sbin:/Users/forets/Library/Python/2.7/bin/:/Users/forets/.rbenv/shims:/Applications/usr/bin:/Applications/Julia-0.6.app/Contents/Resources/julia/bin/:/Users/forets/Projects/OCRG/ocrg_git/:/Users/forets/Tools/spaceex_src/sspaceex/Release:/Applications/MATLAB_R2016a.app/bin:~/Tools/sage-master:/Library/Frameworks/Python.framework/Versions/3.5/bin:/usr/local/opt/coreutils/libexec/gnubin:/usr/local/bin:/usr/local/bin:/Library/Frameworks/Python.framework/Versions/3.5/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/opt/X11/bin:/Library/TeX/texbin
I tried to $ unset DYLD_LIBRARY_PATH , and to $ export PATH= ....
(removing the paths /opt/local/bin and /opt/local/sbin). After these
changes, now i get:
$ make
/Applications/Xcode.app/Contents/Developer/usr/bin/make build/make/Makefile
--stop
make[1]: `build/make/Makefile' is up to date.
build/bin/sage-logger \
"cd build/make && ./install 'all'" logs/install.log
*** ALL ENVIRONMENT VARIABLES BEFORE BUILD: ***
Apple_PubSub_Socket_Render=/private/tmp/com.apple.launchd.B1SYzE4DrX/Render
CARLIN_REACH_ROOT=/Users/forets/Projects/nliftZonotopes
CONFIGURED_CC=gcc
CONFIGURED_CXX=g++
CONFIGURED_FC=gfortran
CONFIGURED_OBJC=@OBJ@
CONFIGURED_OBJCXX=g++
CORA_ROOT=/Users/forets/Tools/CORA_2016_orig
DISPLAY=/private/tmp/com.apple.launchd.vkRKLUhZIY/org.macosforge.xquartz:0
DYLD_LIBRARY_PATH=/Users/forets/Tools/spaceex_src/sspaceex_local/lib/
GRB_LICENSE_FILE=/Users/forets/gurobi.lic
HOME=/Users/forets
LC_ALL=en_US.UTF-8
LC_CTYPE=UTF-8
LOGNAME=forets
MAKE=make
MAKEFLAGS= V=1
MAKELEVEL=1
MANPATH=/opt/local/share/man:
MFLAGS=
PATH=/Users/forets/sage-src/sage/build/bin:/Users/forets/sage-src/sage/src/bin:/Users/forets/sage-src/sage/local/bin:/Users/forets/Library/Python/2.7/bin/:/Users/forets/.rbenv/shims:/Applications/usr/bin:/Applications/Julia-0.6.app/Contents/Resources/julia/bin/:/Users/forets/Projects/OCRG/ocrg_git/:/Users/forets/Tools/spaceex_src/sspaceex/Release:/Applications/MATLAB_R2016a.app/bin:/Users/forets/Tools/sage-master:/Library/Frameworks/Python.framework/Versions/3.5/bin:/usr/local/opt/coreutils/libexec/gnubin:/usr/local/bin:/usr/local/bin:/Library/Frameworks/Python.framework/Versions/3.5/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/opt/X11/bin:/Library/TeX/texbin
PWD=/Users/forets/sage-src/sage/build/make
PYTHONPATH=/Users/forets/sage-src/sage/local
RBENV_SHELL=bash
SAGE_EXTCODE=/Users/forets/sage-src/sage/local/share/sage/ext
SAGE_LOCAL=/Users/forets/sage-src/sage/local
SAGE_LOGS=/Users/forets/sage-src/sage/logs/pkgs
SAGE_ORIG_PATH=/Users/forets/Library/Python/2.7/bin/:/Users/forets/.rbenv/shims:/Applications/usr/bin:/Applications/Julia-0.6.app/Contents/Resources/julia/bin/:/Users/forets/Projects/OCRG/ocrg_git/:/Users/forets/Tools/spaceex_src/sspaceex/Release:/Applications/MATLAB_R2016a.app/bin:/Users/forets/Tools/sage-master:/Library/Frameworks/Python.framework/Versions/3.5/bin:/usr/local/opt/coreutils/libexec/gnubin:/usr/local/bin:/usr/local/bin:/Library/Frameworks/Python.framework/Versions/3.5/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/opt/X11/bin:/Library/TeX/texbin
SAGE_ORIG_PATH_SET=True
SAGE_ROOT=/Users/forets/sage-src/sage
SAGE_SHARE=/Users/forets/sage-src/sage/local/share
SAGE_SPKG_INST=/Users/forets/sage-src/sage/local/var/lib/sage/installed
SAGE_SRC=/Users/forets/sage-src/sage/src
SAGE_VERSION=8.2.beta6
SHELL=/bin/bash
SHLVL=4
SSH_AUTH_SOCK=/private/tmp/com.apple.launchd.XbkLnbFxaK/Listeners
TERM=xterm-256color
TERM_PROGRAM=Apple_Terminal
TERM_PROGRAM_VERSION=361.1
TERM_SESSION_ID=50346A6E-89DE-4F83-8F59-4FB8BCB22954
TMPDIR=/var/folders/b_/qy7kpq613ld0g06jy9g16hz00000gp/T/
USER=forets
XPC_FLAGS=0x0
XPC_SERVICE_NAME=0
_=/usr/local/opt/coreutils/libexec/gnubin/env
__CF_USER_TEXT_ENCODING=0x1F6:0x0:0x0
***********************************************
make base
sage-logger -p 'sage-spkg pkgconf-0.9.7.p0'
'/Users/forets/sage-src/sage/logs/pkgs/pkgconf-0.9.7.p0.log'
[pkgconf-0.9.7.p0] dyld: Library not loaded:
/usr/local/opt/mpfr/lib/libmpfr.4.dylib
[pkgconf-0.9.7.p0] Referenced from: /usr/local/bin/awk
[pkgconf-0.9.7.p0] Reason: image not found
[pkgconf-0.9.7.p0] /Users/forets/sage-src/sage/src/bin/sage-env: line 339:
[: -ge: unary operator expected
[pkgconf-0.9.7.p0] Found local metadata for pkgconf-0.9.7.p0
[pkgconf-0.9.7.p0] Using cached file
/Users/forets/sage-src/sage/upstream/pkgconf-0.9.7.tar.gz
[pkgconf-0.9.7.p0] pkgconf-0.9.7.p0
[pkgconf-0.9.7.p0] ====================================================
[pkgconf-0.9.7.p0] Setting up build directory for pkgconf-0.9.7.p0
[pkgconf-0.9.7.p0] Finished extraction
[pkgconf-0.9.7.p0] No patch files found in ../patches
[pkgconf-0.9.7.p0] ****************************************************
[pkgconf-0.9.7.p0] Host system:
[pkgconf-0.9.7.p0] Darwin Verimags-MacBook-Pro.local 15.6.0 Darwin Kernel
Version 15.6.0: Wed Nov 2 20:30:56 PDT 2016;
root:xnu-3248.60.11.1.2~2/RELEASE_X86_64 x86_64 i386 MacBookPro11,4 Darwin
[pkgconf-0.9.7.p0] ****************************************************
[pkgconf-0.9.7.p0] C compiler: gcc
[pkgconf-0.9.7.p0] C compiler version:
[pkgconf-0.9.7.p0] Using built-in specs.
[pkgconf-0.9.7.p0] COLLECT_GCC=gcc
[pkgconf-0.9.7.p0]
COLLECT_LTO_WRAPPER=/Users/forets/sage-src/sage/local/libexec/gcc/x86_64-apple-darwin15.6.0/5.4.0/lto-wrapper
[pkgconf-0.9.7.p0] Target: x86_64-apple-darwin15.6.0
[pkgconf-0.9.7.p0] Configured with: ../src/configure
--prefix=/Users/forets/sage-src/sage/local
--with-local-prefix=/Users/forets/sage-src/sage/local
--with-gmp=/Users/forets/sage-src/sage/local
--with-mpfr=/Users/forets/sage-src/sage/local
--with-mpc=/Users/forets/sage-src/sage/local --with-system-zlib
--disable-multilib --disable-nls --enable-languages=c,c++,fortran
--disable-libitm --with-build-config=bootstrap-debug --without-isl
--without-cloog
[pkgconf-0.9.7.p0] Thread model: posix
[pkgconf-0.9.7.p0] gcc version 5.4.0 (GCC)
[pkgconf-0.9.7.p0] ****************************************************
[pkgconf-0.9.7.p0] Configuring pkgconf-0.9.7.p0
[pkgconf-0.9.7.p0] checking for gcc... gcc
[pkgconf-0.9.7.p0] checking whether the C compiler works... no
[pkgconf-0.9.7.p0] configure: error: in
`/Users/forets/sage-src/sage/local/var/tmp/sage/build/pkgconf-0.9.7.p0/src':
[pkgconf-0.9.7.p0] configure: error: C compiler cannot create executables
[pkgconf-0.9.7.p0] See `config.log' for more details
[pkgconf-0.9.7.p0]
********************************************************************************
[pkgconf-0.9.7.p0] Error configuring pkgconf-0.9.7.p0
[pkgconf-0.9.7.p0]
********************************************************************************
[pkgconf-0.9.7.p0]
[pkgconf-0.9.7.p0] real 0m0.298s
[pkgconf-0.9.7.p0] user 0m0.123s
[pkgconf-0.9.7.p0] sys 0m0.144s
[pkgconf-0.9.7.p0]
************************************************************************
[pkgconf-0.9.7.p0] Error installing package pkgconf-0.9.7.p0
[pkgconf-0.9.7.p0]
************************************************************************
[pkgconf-0.9.7.p0] Please email sage-devel
(http://groups.google.com/group/sage-devel)
[pkgconf-0.9.7.p0] explaining the problem and including the log file
[pkgconf-0.9.7.p0]
/Users/forets/sage-src/sage/logs/pkgs/pkgconf-0.9.7.p0.log
[pkgconf-0.9.7.p0] Describe your computer, operating system, etc.
[pkgconf-0.9.7.p0] If you want to try to fix the problem yourself, *don't*
just cd to
[pkgconf-0.9.7.p0]
/Users/forets/sage-src/sage/local/var/tmp/sage/build/pkgconf-0.9.7.p0 and
type 'make' or whatever is appropriate.
[pkgconf-0.9.7.p0] Instead, the following commands setup all environment
variables
[pkgconf-0.9.7.p0] correctly and load a subshell for you to debug the error:
[pkgconf-0.9.7.p0] (cd
'/Users/forets/sage-src/sage/local/var/tmp/sage/build/pkgconf-0.9.7.p0' &&
'/Users/forets/sage-src/sage/sage' --sh)
[pkgconf-0.9.7.p0] When you are done debugging, you can type "exit" to
leave the subshell.
[pkgconf-0.9.7.p0]
************************************************************************
make[2]: ***
[/Users/forets/sage-src/sage/local/var/lib/sage/installed/pkgconf-0.9.7.p0]
Error 1
make[1]: *** [all-toolchain] Error 2
real 0m0.749s
user 0m0.337s
sys 0m0.347s
***************************************************************
Error building Sage.
The following package(s) may have failed to build (not necessarily
during this run of 'make all'):
* package: mpir-2.7.2
log file: /Users/forets/sage-src/sage/logs/pkgs/mpir-2.7.2.log
build directory:
/Users/forets/sage-src/sage/local/var/tmp/sage/build/mpir-2.7.2
* package: pkgconf-0.9.7.p0
log file: /Users/forets/sage-src/sage/logs/pkgs/pkgconf-0.9.7.p0.log
build directory:
/Users/forets/sage-src/sage/local/var/tmp/sage/build/pkgconf-0.9.7.p0
* documentation: dochtml
log file: /Users/forets/sage-src/sage/logs/pkgs/../dochtml.log
The build directory may contain configuration files and other potentially
helpful information. WARNING: if you now run 'make' again, the build
directory will, by default, be deleted. Set the environment variable
SAGE_KEEP_BUILT_SPKGS to 'yes' to prevent this.
make: *** [all] Error 1
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