[sage-support] Re: Possible bug in graph isomorphism search_tree function

2007-11-25 Thread Dustin Pluta
Here are a couple similar graphs that go fine: G = {0: {1: None, 6: None, 7: None, 10: None, 11: None, 12: None, 13: None}, 1: {0: None, 6: None, 7: None, 10: None, 11: None, 12: None, 13: None, 18: None}, 2: {3: None, 4: None, 5: None, 8: None, 9: None, 14: None, 15: None, 20: None}, 3: {2:

[sage-support] Re: Possible bug in graph isomorphism search_tree function

2007-11-25 Thread Robert Miller
Okay, I guess the profiler is only profiling Python calls, so it's not so good to figure out what's going on. There are some linux tools that may help with this. I will look into this and post back in a while (maybe 1 week) when I have something. Thank you for reporting this important example.

[sage-support] Re: Possible bug in graph isomorphism search_tree function

2007-11-24 Thread Dustin Pluta
We didn't really have any expectations about the size of these automorphism groups (this isn't the central part of the project), so I'm not sure if this output is reasonable for the given graph. But here's what search_tree gives: ([[0, 6, 2, 3, 4, 5, 1, 7, 8, 14, 10, 11, 12, 13, 9, 15, 16, 17,

[sage-support] Re: Possible bug in graph isomorphism search_tree function

2007-11-23 Thread mabshoff
On Nov 23, 4:05 am, Dustin Pluta [EMAIL PROTECTED] wrote: Hi, Hello Dustin, I ran across a graph and partition for which it takes the search_tree function 6 hours on my machine to complete, and I was wondering if this is something to be expected, or a possible bug. I've been working

[sage-support] Re: Possible bug in graph isomorphism search_tree function

2007-11-23 Thread Robert Miller
The complexity predicting the running time of this algorithm is difficult to analyze, and depends very deeply on the structure of the graph itself. With G and Pi as you have them, I'm looking at sage: g = Graph(G) sage: g.show(partition=Pi) and it seems to be moderately symmetric. Usually when

[sage-support] Re: Possible bug in graph isomorphism search_tree function

2007-11-23 Thread Robert Miller
PS - A mugshot of the culprit: http://www.rlmiller.org/bug.jpg On Nov 23, 10:16 am, Robert Miller [EMAIL PROTECTED] wrote: The complexity predicting the running time of this algorithm is difficult to analyze, and depends very deeply on the structure of the graph itself. With G and Pi as you