Hi Andreas,
On Fri, 2014-11-21 at 10:58 +0800, Andreas Wilm wrote:
> Hi all,
>
> I have a read pair with partial, perfect overlap. In a pileup the
> base-qualities for (apparently) one read get bumped up, but the other
> is set to zero. With 'mpileup -x' you obviously can't see this. If the
> g
Hi all,
I have a read pair with partial, perfect overlap. In a pileup the
base-qualities for (apparently) one read get bumped up, but the other
is set to zero. With 'mpileup -x' you obviously can't see this. If the
goal of the overlap detection is to merge base-qualities, wouldn't it
make sense to
