Please disregard my previous message. It finally dawned on me that the
additional file was not output from samtools, but from an unrelated
analysis pipeline being run on the data. I hadn't realized the other
pipeline had been started yet, so its output existing caught me by
surprise. I apologize fo
Currently trying to convert some BAM files back to FASTQ to perform
alignment with known parameters. Everything seems to be working, but there
is a file being generated by samtools which I can find no documentation or
explanation of. Running the following command:
samtools fastq -0 ${fname}_other.
