Hello,
What does the header from the "samtools view -bT $reference $file > $bamfile"
bam file look like?
Regards,
Andrew
From: Baiba Alksere
Sent: 02 September 2020 09:24:18
To: [email protected]
Subject: [Samtools-help]
Hello,
I have a problem with samtools newest version and BWA tool from Sourceforge.
I have sam files, but it looks like samtools are not recognizing header,
and also not doing indexing. Is that a problem with bwa alignment, or
samtools? scripts and samtools error message example are attached.
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