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From: Thomas W. Blackwell [tbla...@umich.edu]
Sent: Sunday, October 26, 2014 10:23 PM
To: Camille A. Daniels
Cc: samtools-help@lists.sourceforge.net
Subject: Re: [Samtools-help] bam file error
Camille -
The samtools command line loo
Camille -
The samtools command line looks fine except for the final 's1_sortcoords'.
Not sure what's intended there. If this is meant to be the output file
name, then either a redirection operator '>' is needed just before it, or
it should be the value of '-o' and be moved earlier before the
