> -Original Message-
> From: John Marshall [mailto:j...@sanger.ac.uk]
> Sent: 28 July 2016 14:50
> To: Adam Witney
> Cc: samtools-help@lists.sourceforge.net
> Subject: Re: [Samtools-help] different output when upgrading samtools from
> 0.1.19 to 1.3.1
>
> On
On 27 Jul 2016, at 15:34, Adam Witney wrote:
> I am upgrading an analysis from samtools version 0.1.19-44428cd to version
> 1.3.1 (using htslib 1.3.1). I am trying to understand why the pileup changes
> so much in this example
>
> samtools mpileup -s -f genomes/NC_000962.fna alignments/sample-1
