Hi James,
Thank you very much for your explanation.
Best,
Li Qian
> 在 2017年2月8日，上午12:18，James Bonfield 写道：
>
> Hello,
>
> On Tue, Feb 07, 2017 at 10:10:55PM +0800, Qian Li wrote:
>> I used rmdup within samtools to remove duplicates for paired-end
>> reads with default parameters. It turned ou
Hello,
On Tue, Feb 07, 2017 at 10:10:55PM +0800, Qian Li wrote:
> I used rmdup within samtools to remove duplicates for paired-end
> reads with default parameters. It turned out that in some cases only
> one mate of a read pair was kept. As I understand, read pairs should
> be kept rather than one
