Hello,
I observe a strange problem and I am not able to find out what is the exact
reason of it. When I use samtools mpileup | another_program, samtools
return error code 141. Everything else is OK (pileup is well created, all
data are well processed). I observe it when I use set -o pipefail. The
On 13 Nov 2014, at 12:23, Karel Břinda karel.bri...@gmail.com wrote:
I observe a strange problem and I am not able to find out what is the exact
reason of it. When I use samtools mpileup | another_program, samtools
return error code 141.
When a Unix shell reports that a command has an exit
Hello,
thanks a lot for this excellent answer. Thanks to it I found where
originally the problem started.
So as I realized, it appeared only with FASTA files containing space in the
first line (i.e., with a sequence description). The program mentioned in my
previous e-mail as another_program
