Dear list,
I would like to programmatically access the samtools library for a C++ program.
Unfortunately, I
cannot figure out how to sort a bam file. Indeed, bam.h states that it offers
ways for sorting but I
did not find a matching function:
--
Hey Hua,
the error message has a link to getting help, and the problem you are
having is described in the FAQ (search for "MAPQ"):
http://broadinstitute.github.io/picard/faq.html. Please send further
questions here. Thank-you,
N
On Tue, Jan 27, 2015 at 8:53 PM, 黄桦 wrote:
> Hi All
> I am gett
Hi Johannes,
The sort functions aren't in the header, the main sort function isn't
really constructed in a way to be conducive to use in a library (i.e., you
can't just give it an htsFile* and have it run, you basically give it the
command line options for "samtools sort").
Doing the sorting isn'
