Re: [Scikit-learn-general] Score function in Extra-Trees

2015-02-25 Thread Gilles Louppe
Hi Pierre, While the name is different, the MSE criterion is strictly equivalent to the reduction of variance. The only difference is that we do not divide by var{y|S} because this factor is the same for all splits and all features, hence the maximizer is the same. Cheers, Gilles On 24

Re: [Scikit-learn-general] Confidence value for each sample: Random Forest

2015-02-25 Thread shalu jhanwar
Hi guys! Ahh, ok, I check it and will confirm you. thanks! Shalu On Wed, Feb 25, 2015 at 9:32 PM, Andy t3k...@gmail.com wrote: You fit the data again before calling predict_proba. You did not fix the random seed, so the outcome of the fit will be different and you can't expect it to be

Re: [Scikit-learn-general] SVC.predict_proba result inconsistent with SVC.predict result

2015-02-25 Thread shalu jhanwar
Hi Andy, Yes here is the full code in which I am having a training dataset (x_data) and an independent test dataset(test_x_data). Mose importantly, I found few such value in iris data too. #same Scaling on both test and train data (centering the data scaling) scaler =

Re: [Scikit-learn-general] Confidence value for each sample: Random Forest

2015-02-25 Thread shalu jhanwar
Hi guys! I removed refitting the data, but didn't set random_state explicitly. The same problem persist .Look at these few examples: Y_true Y_predict Class0_prob. Class1_prob. 1 0 0.28 0.72 0 0

Re: [Scikit-learn-general] SVC.predict_proba result inconsistent with SVC.predict result

2015-02-25 Thread shalu jhanwar
It didn't work Andy, even after that... I removed refitting the data, but didn't set random_state explicitly. The same problem persist. Look at these few examples: Y_true Y_predict Class0_prob. Class1_prob. 1 0 0.28 0.72

Re: [Scikit-learn-general] Confidence value for each sample: Random Forest

2015-02-25 Thread Andy
please show the code. On 02/25/2015 04:51 PM, shalu jhanwar wrote: Hi guys! I removed refitting the data, but didn't set random_state explicitly. The same problem persist .Look at these few examples: Y_true Y_predict Class0_prob. Class1_prob. 1 0

[Scikit-learn-general] Self Organizing Maps

2015-02-25 Thread Damith Senanayake
Hi, I noticed that Scikit-Learn doesn't have an implementation of Self Organizing Maps and its variants. Admittedly, SOMs are quite outdated, but there are some more general variants of them that are quite frequently used. Some examples are Growing Self Organizing Maps Operator SOMs Kernel SOMs

Re: [Scikit-learn-general] SciPy 2015 Austin

2015-02-25 Thread Kyle Kastner
That is a great idea. We should definitely get a list of people who are attending and try to put something together - the SciPy 2013 version was quite good, and the tutorial at EuroScipy last August was also a big hit. I would be glad to be a part of the tutorial if there aren't more seasoned

Re: [Scikit-learn-general] Confidence value for each sample: Random Forest

2015-02-25 Thread Andy
That looks fine. in line 125, can you try assert(np.all(np.argmax(y_score, axis=-1) == y_pred)) That should go through. On 02/25/2015 05:38 PM, shalu jhanwar wrote: Hi Andy, please find this version of the code in which I changed the refit issue. thanks! Shalu On Wed, Feb 25, 2015 at

Re: [Scikit-learn-general] Confidence value for each sample: Random Forest

2015-02-25 Thread shalu jhanwar
Hi Andy, please find this version of the code in which I changed the refit issue. thanks! Shalu On Wed, Feb 25, 2015 at 11:35 PM, shalu jhanwar shalu.jhanwa...@gmail.com wrote: Hi Andy, Please see the code. Hereby I am attaching following files: i) Code:

Re: [Scikit-learn-general] SciPy 2015 Austin

2015-02-25 Thread Kyle Kastner
I am working on one now. Hoping to go even if rejected, for sprint and meeting up On Wed, Feb 25, 2015 at 9:51 AM, Andy t3k...@gmail.com wrote: Hey everybody. Is anyone going to / submitting talks to scipy? My institute (or rather Moore-Sloan) is a sponsor so they'll sent me :) Cheers,

Re: [Scikit-learn-general] grid search random state

2015-02-25 Thread Pagliari, Roberto
Thank you! From: Andy [mailto:t3k...@gmail.com] Sent: Wednesday, February 25, 2015 3:24 PM To: scikit-learn-general@lists.sourceforge.net Subject: Re: [Scikit-learn-general] grid search random state On 02/24/2015 08:26 PM, Pagliari, Roberto wrote: I have two questions about gridsearchcv 1.

Re: [Scikit-learn-general] SciPy 2015 Austin

2015-02-25 Thread Andy
Cool. Jake, I heard you'd be at a Moore-Sloan booth, or something like that? Any one else who is coming and wants to help with the tutorial? I definitely want to submit a proposal, and I'm happy to include anyone who is willing :) On 02/25/2015 09:21 PM, Kyle Kastner wrote: That is a great

Re: [Scikit-learn-general] Self Organizing Maps

2015-02-25 Thread Andy
The thing is: I have rarely seen a compelling use. If you have a use-case where the algorithms you listed out-perform things that are already in scikit-learn, I think we'd be happy to adopt them. Until now, I haven't seen a great application.

Re: [Scikit-learn-general] SciPy 2015 Austin

2015-02-25 Thread Nelle Varoquaux
I'll probably be there. Cheers, N On 26 February 2015 at 05:44, Andy t3k...@gmail.com wrote: Cool. Jake, I heard you'd be at a Moore-Sloan booth, or something like that? Any one else who is coming and wants to help with the tutorial? I definitely want to submit a proposal, and I'm happy to

Re: [Scikit-learn-general] Self Organizing Maps

2015-02-25 Thread Ronnie Ghose
-1 SOM are old - i haven't seen any jmlr/simialr results with them published in years On Wed, Feb 25, 2015 at 11:28 PM, Maheshakya Wijewardena pmaheshak...@gmail.com wrote: There was an attempt along this line some time ago. You may like to have a look in this issue and the PR to get an idea

Re: [Scikit-learn-general] Self Organizing Maps

2015-02-25 Thread Maheshakya Wijewardena
There was an attempt along this line some time ago. You may like to have a look in this issue and the PR to get an idea about how they can fit in. 1. Add Self Organising Map as a clustering algorithm. https://github.com/scikit-learn/scikit-learn/issues/2892 2. Self-Organizing Map