Oh. Silly mistake. Doesn't break with the correct patch, now at PR#4604...
On 16 April 2015 at 14:24, Joel Nothman wrote:
> Except apparently that commit breaks the code... Maybe I've misunderstood
> something :(
>
> On 16 April 2015 at 14:18, Joel Nothman wrote:
>
>> ball tree is not vectorize
Except apparently that commit breaks the code... Maybe I've misunderstood
something :(
On 16 April 2015 at 14:18, Joel Nothman wrote:
> ball tree is not vectorized in the sense of SIMD, but there is
> Python/numpy overhead in LSHForest that is not present in ball tree.
>
> I think one of the pro
ball tree is not vectorized in the sense of SIMD, but there is Python/numpy
overhead in LSHForest that is not present in ball tree.
I think one of the problems is the high n_candidates relative to the
n_neighbors. This really increases the search time.
Once we're dealing with large enough index a
Moreover, this drawback occurs because LSHForest does not vectorize
multiple queries as in 'ball_tree' or any other method. This slows the
exact neighbor distance calculation down significantly after approximation.
This will not be a problem if queries are for individual points.
Unfortunately, form
LHSForest is not intended for dimensions at which exact methods work well,
nor for tiny datasets. Try d>500, n_points>10, I don't remember the
switchover point.
The documentation should make this clear, but unfortunately I don't see
that it does.
On Apr 15, 2015 7:08 PM, "Joel Nothman" wrote:
I agree this is disappointing, and we need to work on making LSHForest
faster. Portions should probably be coded in Cython, for instance, as the
current implementation is a bit circuitous in order to work in numpy. PRs
are welcome.
LSHForest could use parallelism to be faster, but so can (and will
Couple of months back, I tried to use following
https://github.com/shriphani/robust_pcp/blob/master/robust_pcp.py
But I could not install pypropack develope by Jake Vanderplas
So I used randomized_svd from Scikitlearn instead of svdp in the code
mentioned above.
It worked "OK" for me.
On Wed, Apr
IF it was in scipy would it be backported to the older versions? How
would we handle that?
On Wed, Apr 15, 2015 at 3:40 PM, Olivier Grisel
wrote:
> We could use PyPROPACK if it was contributed upstream in scipy ;)
>
> I know that some scipy maintainers don't appreciate arpack much and
> would lik
We could use PyPROPACK if it was contributed upstream in scipy ;)
I know that some scipy maintainers don't appreciate arpack much and
would like to see it replaced (or at least completed with propack).
--
Olivier
--
BPM
Kyle & Andreas,
Here is my github repo:
https://github.com/apapanico/RPCA
Responses:
1. I didn't make the GSoC suggestion a few years (also not a student
anymore :-(, just using RPCA for work), I just came across it in a google
search when trying to find python implementations.
2. As for GoDec, I
Did you look at GoDec at all? At least when I checked it was more
scalable. My bad implementations translated from MATLAB are here:
http://kastnerkyle.github.io/blog/2014/03/05/matrix-decomposition/
As far as PROPACK goes - what are the minimal methods we would need to
port? I don't know that we w
Hi.
Yes, run "make latexpdf" in the "doc" folder.
Best,
Andy
On 04/15/2015 01:11 PM, Tim wrote:
> Thanks, Andy!
>
> How do you generate the pdf file? Can I also do that?
>
>
> On Wed, 4/15/15, Andreas Mueller wrote:
>
> Subject: Re: [Scikit-learn-g
Thanks, Andy!
How do you generate the pdf file? Can I also do that?
On Wed, 4/15/15, Andreas Mueller wrote:
Subject: Re: [Scikit-learn-general] Is there a pdf documentation for the
latest stable scikit-learn?
To: scikit-learn-general@lists.sourcef
Hi Alex.
Thanks for that :) It would be great if you could publish your version
to github.
We probably can't use PyPROPACK in scikit-learn.
The GSoC application period is just over, so you'd have to wait till
next year to do that.
Cheers,
Andy
On 04/15/2015 12:53 PM, Alex wrote:
Hi Andreas,
Hi Tim.
There are pdfs for 0.16.0 and 0.16.1 up now at
http://sourceforge.net/projects/scikit-learn/files/documentation/
Let us know if there are issues with it.
Cheers,
Andy
On 04/15/2015 12:08 PM, Tim wrote:
> Hello,
>
> I am looking for a pdf file for the documentation for the latest stable
Hi Andreas,
I have an implementation of the ALM method for Robust PCA from Candes using
Jake Vanderplas' PyPROPACK. It's in a private bitbucket repo but I will move
it to github and send the link if you like. I actually really wanted to
contribute RPCA to sklearn.
I don't know about a PR but
hi andy and dan,
i've been using a similar heuristic with extra trees quite effectively. i
have to look at the details of this R package and the paper, but in my case
i add a feature that has very low correlation with my target class/value
(depending on the problem) and choose features that have a
Hi Andy,
So at each iteration the x predictor matrix (n by m) is practically
copied and each column is shuffled in the copied version. This shuffled
matrix is then copied next to the original (n by 2m) and fed into the
RF, to get the feature importances.
Also at the start of the method, a vect
Hello,
I am looking for a pdf file for the documentation for the latest stable
scikit-learn i.e. 0.16.1.
I followed http://scikit-learn.org/stable/support.html#documentation-resources,
which leads me to
http://sourceforge.net/projects/scikit-learn/files/documentation/, But the pdf
files are f
Hi Dan.
I saw that paper, but it is not well-cited.
My question is more how different this is from what we already have.
So it looks like some (5) random control features are added and the
features importances are compared against the control.
The question is whether the feature importance that
Hi Andy,
This is the paper: http://www.jstatsoft.org/v36/i11/ which was cited 79
times according to Google Scholar.
Regarding your second point, the first 3 questions of the FAQ on the
Boruta website answers it I guess.. https://m2.icm.edu.pl/boruta/
1. *So, what's so special about Boruta?*
Hi Daniel.
That sounds potentially interesting.
Is there a widely cited paper for this?
I didn't read the paper, but it looks very similar to
RFE(RandomForestClassifier()).
Is it qualitatively different from that? Does it use a different feature
importance?
btw: your mail is flagged as spam as
Hi everyone,
was really impressed by the speedups provided by LSHForest compared to
brute-force search. Out of curiosity, I compared LSRForest to the existing ball
tree implementation. The approximate algorithm is consistently slower (see
below). Is this normal and should it be mentioned in the
Robust PCA is awesome - I would definitely like to see a good and fast
version. I had a version once upon a time, but it was neither good
*or* fast :)
On Wed, Apr 15, 2015 at 10:33 AM, Andreas Mueller wrote:
> Hey all.
> Was there some plan to add Robust PCA at some point? I vaguely remember
> a
Hey all.
Was there some plan to add Robust PCA at some point? I vaguely remember
a PR, but maybe I'm making things up.
It sounds like a pretty cool model and is widely used:
Sparse
http://statweb.stanford.edu/~candes/papers/RobustPCA.pdf
[and I was just promised a good implementation]
Andy
PyData London is soon, not sure the date is official. It's end of June,
I think.
In NYC I think I'm talking at a Python meetup at April 23rd.
On 04/14/2015 06:05 PM, Pagliari, Roberto wrote:
Is there a pydata or sklearn workshop coming up in NYC or London?
Thank you,
--
Hi all,
I needed a multivariate feature selection method for my work. As I'm
working with biological/medical data, where n < p or even n << p I
started to read up on Random Forest based methods, as in my limited
understanding RF copes pretty well with this suboptimal situation.
I came across
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