Dear all,
Can you please edit my_configuration.conf file and help help in setting up
the nodes as an execd.
so I can use the following command for the entire installation
./inst_sge -m -auto /opt/sge/util/install_modules/my_configuration.conf
Please find attached my_configuration.conf file and do the needful
Regards
Himanshu
On Thu, Nov 10, 2016 at 2:26 PM, Himanshu Joshi <anshuhi...@gmail.com>
wrote:
>
>
> On Wed, Nov 9, 2016 at 6:56 PM, William Hay <w....@ucl.ac.uk> wrote:
>
>> On Wed, Nov 09, 2016 at 04:59:18PM +0530, Himanshu Joshi wrote:
>> > On Wed, Nov 9, 2016 at 2:18 PM, William Hay <w....@ucl.ac.uk> wrote:
>> >
>> > On Wed, Nov 09, 2016 at 11:25:42AM +0530, Himanshu Joshi wrote:
>> > > On Tue, Nov 8, 2016 at 9:38 PM, William Hay <w....@ucl.ac.uk>
>> > wrote:
>> > >
>> > > On Tue, Nov 08, 2016 at 11:30:35AM +0530, Himanshu Joshi
>> wrote:
>> > > > I'd try running the command
>> > > >
>> > > > /usr/lib/lsb/install_initd
>> > /etc/init.d/sgemaster.mbialjpj55||echo
>> > > $?
>> > > >
>> > > > To see if it produces any output.
>> > > >
>> > > > Yes the output for this command is
>> > > > 1
>> > > Annoyingly silent error.
>> > >
>> > > Ya true..
>> > >
>> > > What does
>> > > ls -l /etc/rc.d/rc3.d/*sge*
>> > > output if anything?
>> > >
>> > > It says " no match"
>> > > i.e. /etc/rc.d/rc3.d folder has no file with *sge*
>> > >
>> > > >
>> > > > command "ps ax |grep sge" says
>> > > >
>> > > > 17870 pts/4 S+ 0:00 grep --color=auto sge
>> > > > 26341 ? S 10557:34 /bin/sh ./inst_sge -m -x
>> > > You have a copy of inst_sge running eating that amount of
>> cpu
>> > time? Was
>> > > that intentionally still running?
>> > >
>> > > I was not running it intentionally , and system monitor also
>> does
>> > not show
>> > > any process with name "inst_sge". I had tried closing all the
>> > terminals
>> > > and restarted the system
>> > >
>> > > now the output is
>> > > 8160 pts/0 S+ 0:00 grep --color=auto sge
>> > IIRC the installation of the init script is the last thing
>> inst_sge does
>> > so
>> > if this is the only thing blocking the install then you just need
>> to
>> > set the file up by hand
>> >
>> > Try the install_initd command by hand again now that there isn't a
>> > running inst_sge
>> >
>> > The ./install_initd says
>> If you leave out the ./ it will search the path.
>>
>> > Command not found
>> > I think this file (install_initd) is not available in /opt/sge that
>> is why
>> > command not found
>> >
>> >
>> > If that doesn't work try:
>> >
>> > chkconfig --add sgemaster.mbialjpj55
>> > chkconfig sgemaster.mbialjpj55 on
>> > service sgemaster.mbialjpj55 start
>> >
>> >
>> >
>> > Try running
>> > /etc/init.d/sgemaster.mbialjpj55 start
>> > by hand does it produce output?
>> >
>> > It worked and then the output of "ps ax | grep sge" is
>> > 29305 ? Sl 0:00 /opt/sge/bin/lx-amd64/sge_qmaster
>> > 29974 pts/0 S+ 0:00 grep --color=auto sge
>> >
>> > Now the below 3 commands are immaterial
>> > chkconfig --add sgemaster.mbialjpj55
>> > chkconfig sgemaster.mbialjpj55 on
>> > service sgemaster.mbialjpj55 start
>> > as these commands say
>> Well the first two make sure it will start on reboot.
>>
>> >
>> > "sge_qmaster with PID 29305 is already running"
>> >
>> >
>> >
>> > cat /etc/init.d/sgemaster.mbialjpj55
>> >
>> >
>> >
>> > This command displays the contents of sgemaster.mbialjpj55
>> executable
>> > file in terminal
>>
>> >
>> >
>> >
>> > William
>> >
>> > Thanks William...
>> >
>> > But now also, I am not sure about installation,If it is done or not
>>
>> If you installed Dave's RPMS then it is installed. inst_sge despite the
>> name
>> really just does an initial config.
>>
>
> !! Cheers .... Hope inst_sge really just does an initial config...
>
>> >
>> > Kindly suggest the needful
>> I suspect you probably want to use inst_sge to configure the node as an
>> execd as well.
>>
>
> Is there any documentation available for doing that because I do not have
> any idea how to do it
>
> And I tried some computations with the current setup but some of the
> errors were
>
> Error: which: no qconf in (/usr/local...... .... )
> Warning SGE_ROOT environment variable is set but Grid Engine software is
> not found, will run locally
>
> And there is no folder gridengine in usr/share/doc
> Thus it indicates the software is not at all installed
>
>>
>> > --
>> > Himanshu Joshi
>>
>
>
>
> --
> Himanshu Joshi
>
--
Ph.D Scholar,
Department of Psychiatry
NIMHANS, Bangalore
#------------------------------------------------- -*- sh -*-
# SGE default configuration file
#-------------------------------------------------
# Use always fully qualified pathnames, please
# This file is sourced by a Bourne shell script, so the assignments
# must be in sh syntax, i.e.
# <variable>=<value>
# with no space around "=", and <value> must be quoted if it includes
# whitespace or sh metacharacters that should be read literally.
# SGE_ROOT Path, this is basic information
#(mandatory for qmaster and execd installation)
SGE_ROOT="/opt/sge"
# SGE_QMASTER_PORT is used by qmaster for communication
# Please enter the port in this way: 1300
# not like this: 1300/tcp
# (mandatory for qmaster installation)
SGE_QMASTER_PORT=6444
# SGE_EXECD_PORT is used by execd for communication
# Please enter the port in this way: 1300
# Not like this: 1300/tcp
# (mandatory for qmaster installation)
SGE_EXECD_PORT=6445
# SGE_ENABLE_SMF
# if set to false SMF will not control SGE services
SGE_ENABLE_SMF="false"
# SGE_CLUSTER_NAME
# Name of this cluster (used by SMF as a service instance name)
SGE_CLUSTER_NAME=mbialjpj
# SGE_JMX_PORT is used by qmaster's JMX MBean server
# mandatory if install_qmaster -jmx -auto <cfgfile>
# range: 1024-65500
SGE_JMX_PORT="Please enter port"
# SGE_JMX_SSL is used by qmaster's JMX MBean server
# if SGE_JMX_SSL=true, the mbean server connection uses
# SSL authentication
SGE_JMX_SSL="false"
# SGE_JMX_SSL_CLIENT is used by qmaster's JMX MBean server
# if SGE_JMX_SSL_CLIENT=true, the mbean server connection uses
# SSL authentication of the client in addition
SGE_JMX_SSL_CLIENT="false"
# SGE_JMX_SSL_KEYSTORE is used by qmaster's JMX MBean server
# if SGE_JMX_SSL=true the server keystore found here is used
# e.g. /var/lib/sgeCA/port<sge_qmaster_port>/<sge_cell>/private/keystore
SGE_JMX_SSL_KEYSTORE="Please enter absolute path of server keystore file"
# SGE_JMX_SSL_KEYSTORE_PW is used by qmaster's JMX MBean server
# password for the SGE_JMX_SSL_KEYSTORE file
SGE_JMX_SSL_KEYSTORE_PW="Please enter the server keystore password"
# SGE_JVM_LIB_PATH is used by qmaster's jvm thread
# path to libjvm.so
# If value is missing or set to "none", the JMX thread will not be
# installed. When the value is empty, or the path does not exist on
# the system, Grid Engine will try to find a correct value. If it
# cannot do so, the value is set to "jvmlib_missing" and the JMX
# thread will be configured but will fail to start
SGE_JVM_LIB_PATH="Please enter absolute path of libjvm.so"
# SGE_ADDITIONAL_JVM_ARGS is used by qmaster's jvm thread
# jvm specific arguments as -verbose:jni etc.
# optional, can be empty
SGE_ADDITIONAL_JVM_ARGS="-Xmx256m"
# CELL_NAME, will be a directory in SGE_ROOT, contains the common dir
# Please enter only the name of the cell. No path please
# (mandatory for qmaster and execd installation)
CELL_NAME="jpj"
# ADMIN_USER, if you want to use a different admin user than the owner
# of SGE_ROOT, you have to enter the user name here
# Leaving this blank, the owner of the SGE_ROOT dir will be used as admin user
ADMIN_USER=sgeadmin
# The directory where qmaster spools the parts which are not spooled by DB
# (mandatory for qmaster installation)
QMASTER_SPOOL_DIR=$SGE_ROOT/$CELL_NAME/spool/qmaster
# The directory where the execd spools (active jobs)
# This entry is needed even if you are going to use
# berkeley db spooling. Only cluster configuration and jobs will
# be spooled in the database. The execution daemon still needs a spool
# directory
# (mandatory for qmaster installation)
EXECD_SPOOL_DIR=$SGE_ROOT/$CELL_NAME/spool
# For monitoring and accounting of jobs, every job will get
# unique GID. So you have to enter a free GID Range, which
# is assigned to each job running on a machine.
# If you want to run 100 Jobs at the same time on one host you
# have to enter a GID-Range like that: 16000-16100
# (mandatory for qmaster installation)
GID_RANGE="20000-20100"
# If SGE is compiled with -spool-dynamic, you have to enter here which
# spooling method should be used. (classic or berkeleydb)
# (mandatory for qmaster installation)
SPOOLING_METHOD="classic"
# The directory where the DB spools
# If berkeley db spooling is used, it must contain the path to
# the spooling db. Please enter the full path. (eg. /tmp/data/spooldb)
# Remember, this directory must normally be local on the qmaster host.
# An NFS4 mount is supposed to be safe, and NFS2/3, or other remote
# filesystems can be used if the "private" bootstrap option is given.
DB_SPOOLING_DIR="spooldb"
# This parameter sets the number of parallel installation processes.
# To prevents a system overload, or exceeding the number of open file
# descriptors, the user can limit the number of parallel install processes.
# e.g. set PAR_EXECD_INST_COUNT="20", maximum 20 execds are installed in
# parallel.
PAR_EXECD_INST_COUNT="20"
# A list of hosts which should become admin hosts
# If you do not enter any host here, you have to add all of your hosts
# by hand after the installation. The example works without any entry
ADMIN_HOST_LIST=""
# A list of hosts which should become submit hosts
# If you do not enter any host here, you have to add all of your hosts
# by hand after the installation. The example works without any entry
SUBMIT_HOST_LIST=""
# A list of hosts which should become exec hosts
# If you do not enter any host here, you have to add all of your hosts
# by hand after the installation. The example works without any entry
# (mandatory for execution host installation)
EXEC_HOST_LIST=`hostname`
# The directory where the execd spools (local configuration)
# If you want configure your execution daemons to spool in
# a local directory, you have to enter that directory here.
# If you do not want to configure a local execution host spool directory
# please leave this empty
EXECD_SPOOL_DIR_LOCAL=""
# If true, the domainnames will be ignored during the hostname resolving
# if false, the fully qualified domain name will be used for name resolving
HOSTNAME_RESOLVING="true"
# Shell which should be used for remote installation (rsh/ssh)
# This is only supported if your hosts and rshd/sshd are configured
# not to ask for a password, or prompting with any message.
SHELL_NAME="ssh"
# This remote copy command is used for CSP installation.
# The script needs the remote copy command for distributing
# the CSP certificates. Using SSH the command scp has to be entered,
# using the not so secure rsh, the command rcp has to be entered.
# Both need a passwordless ssh/rsh connection to the hosts which
# should be connected to. (Mandatory for CSP installation mode)
COPY_COMMAND="scp"
# Enter your default domain, if you are using /etc/hosts or NIS configuration
DEFAULT_DOMAIN="none"
# If a job stops, fails, or finishes, you can send mail to this address
ADMIN_MAIL="root"
# If true, the rc scripts (sgemaster, sgeexecd) will be added
# to start automatically during boottime
ADD_TO_RC="true"
# If this is "true" the file permissions of executables will be set to 755
# and of ordinary files to 644.
SET_FILE_PERMS="true"
# This option is not implemented, yet.
# When a exechost should be uninstalled, the running jobs will be rescheduled
RESCHEDULE_JOBS="wait"
# Enter one of the three distributed scheduler tuning configuration sets
# (1=normal, 2=high, 3=max)
SCHEDD_CONF="1"
# The name of the shadow host. This host must have read/write permission
# to the qmaster spool directory
# If you want to setup a shadow host, you must enter the servername
# (mandatory for shadow host installation)
SHADOW_HOST=""
# Remove these execution hosts in automatic mode
# (mandatory for uninstallation of execution hosts)
EXEC_HOST_LIST_RM=""
# This option is used for startup script removing.
# If true, all rc startup scripts will be removed during
# automatic deinstallation. If false, the scripts won't
# be touched.
# (mandatory for uninstallation of execution/qmaster hosts)
REMOVE_RC="true"
# This is a Windows specific part of the auto isntallation template
# If you going to install windows executions hosts, you have to enable the
# windows support. To do this, please set the WINDOWS_SUPPORT variable
# to "true". ("false" is disabled)
# (Mandatory for qmaster installation. By default WINDOWS_SUPPORT is
# disabled)
WINDOWS_SUPPORT="false"
# Enabling the WINDOWS_SUPPORT recommends the following parameter.
# The WIN_ADMIN_NAME will be added to the list of SGE managers.
# Without adding the WIN_ADMIN_NAME, the execution host installation
# won't work correctly.
# WIN_ADMIN_NAME is set to "Administrator", which is default on most
# Windows systems. In some cases the WIN_ADMIN_NAME can be prefixed with
# the windows domain name (eg. DOMAIN+Administrator)
# (Mandatory for qmaster installation if windows hosts should be installed)
WIN_ADMIN_NAME="Administrator"
# This parameter is used to switch between local ADMINUSER and Windows
# Domain Adminuser. Setting the WIN_DOMAIN_ACCESS variable to true, the
# Adminuser will be a Windows Domain User. It is recommended that
# a Windows Domain Server is configured and the Windows Domain User is
# created. Setting this variable to false, the local Adminuser will be
# used as ADMINUSER. The install script tries to create this user account
# but we recommend, because it will be safer, to create this user
# before running the installation.
# (Mandatory for qmaster installation if windows hosts should be installed)
WIN_DOMAIN_ACCESS="false"
# This section is used for CSP installation mode.
# CSP_RECREATE recreates the certs on each installation, if true.
# If false, the certs will be created if they don't exist.
# Existing certs won't be overwritten. (Mandatory for CSP install)
CSP_RECREATE="true"
# The created certs won't be copied if this option is set to false
# If true, the script tries to copy the generated certs. This
# requires passwordless ssh/rsh access for user root to the
# execution hosts
CSP_COPY_CERTS="false"
# csp information, your country code (only 2 characters)
# (mandatory for csp install)
CSP_COUNTRY_CODE="IN"
# your state (mandatory for csp install)
CSP_STATE="KA"
# your location, e.g. the building (mandatory for csp install)
CSP_LOCATION="NBRC"
# your arganisation (mandatory for csp install)
CSP_ORGA="NIMHANS"
# your organisation unit (mandatory for csp install)
CSP_ORGA_UNIT="Organisation_unit"
# your email (mandatory for csp install)
CSP_MAIL_ADDRESS="anshuhi...@gmail.com"
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