Re: [SIESTA-L] Follow-up on NaN error with parallel version of Siesta 2.0

2006-10-05 Thread Eduardo Anglada
Hi Derek, I haven't tried with lam-mpi, but with intel mpi there are problems if you link with a blacs compiled for mpi 1.2 while using mpi 2 (lam-mpi implements almost all of mpi 2). The problem is in one of the include files of the c interface of blacs, so it can be really difficult to detect

Re: [SIESTA-L] Follow-up on NaN error with parallel version of Siesta 2.0

2006-10-05 Thread Sergey Lisenkov
Hi Derek, Did you try to use scalapack/blacs shipped with CMKL library? sergey Hi everyone, Just a quick follow up on the NaN errors I have been running into with Siesta 2.0. It looks like the error occurs in the cdiag subroutine (cdiag.F) when pzheevd is called to solve the standard

Re: [SIESTA-L] pseudopotential problem

2006-10-05 Thread Salvador Barraza-Lopez
Hi, I would add the following option to what Marcos says: You can start with a standard atom inp file. See the atom manual for details. Then do an all electron calculation with atm. So you really want an ae.inp kind of file. Keep in mind, atm, unlike siesta, has a very *rigid* readout

Re: [SIESTA-L] probleme_with_phenol_input

2006-10-05 Thread Andrei Postnikov
| Error in Cholesky factorisation in rdiag | Stopping Program from Node:0 | | I don't know what is exactly the problem ? A good chance that it is due to an error in input, e.g. two atoms at the same place Good luck, Andrei Postnikov +-- Dr. Andrei Postnikov Tel. +33-387315873

[SIESTA-L] probleme_with_phenol_input

2006-10-05 Thread cornil david
Dear SIESTA users, I'm a new user of SIESTA and I try to run some little input in order to learn SIESTA. I have a problem with a calculation of a phenol molecule. Here is the end of my output : outcell: Unit cell vectors (Ang): 11.6817490.000.00

Re: [SIESTA-L] pseudopotential problem

2006-10-05 Thread Marcos Verissimo Alves
Hi Bozidar, That really depends on the kind of error you are obtaining on the reading of the pesudo by siesta. There are several points in which your e-mail provides incomplete information: 1) Have you downloaded the pseudopotential itself? If it's giving an error, then it might be corrupted.

[SIESTA-L] pseudopotential problem

2006-10-05 Thread Bozidar Butorac
Dear Siesta users I started calculation about Bismuth in Silicon. I downloaded pseudopotential for Bi from the SIESTA webpage, but after siesta reads input file, the calculation suddenly stops when the pseudopotentil for Bi is being read. I know that pseudopotential for Si is ok, because I did