Re: [SIESTA-L] xyz format input problem

2009-02-13 Thread Javad Hashemi
Hello Sridhar You have 25 coordinates. Javad On Fri, 13 Feb 2009, Sridhar Neelamraju wrote: Hello all, I have just started using Siesta. I am attaching my input file. My system is basically an organic molecule with gold clusters on either side (27 atoms in total) and I want to do a PDOS

Re: [SIESTA-L] multiple LDOS output

2008-11-06 Thread Javad Hashemi
Hi Ruslan you can use the old .DM file to make and it will converge within couple of iteration. Though it still take while to produce the results. add in your output DM.UseSaveDM .true. and include the old SystemLabel.DM in the same directory in which you are running your

Re: [SIESTA-L] Empy output of PDOS calcilation

2008-11-04 Thread Javad Hashemi
wrote: Dear Javad, If your system has non collinear spin then there is a bug in the code and it doesn't save the PDOS. I don't have a patch, but I could try to provide one. Best regards, Eduardo On 04/11/2008, at 10:03, Javad Hashemi wrote: Dear SIESTA users Hello I am calculating PDOS

Re: [SIESTA-L] EIG2DOS Utility

2008-11-02 Thread Javad Hashemi
Hi Johnny As it says in the .EIG file after the fermi energy(so it will be second line of the file) insert the values in a single line for example: -6.1655(Fermi energy which is the first line) 0.1 1000 -5 5 (peak width, number of points, Emin and Emax) you can change the peak width if

Re: [SIESTA-L] grid2cube error

2008-10-21 Thread Javad Hashemi
Hi Edan Thanks for your help Javad On Tue, 21 Oct 2008, Edan Scriven wrote: Javad, The code is converting your lattice vectors from Angstroms to Bohrs (watch out for this with things like nuclear positions too). I don't know what's going on with your recompiled grid2cube problem, but on

[SIESTA-L] grid2cube error

2008-10-20 Thread Javad Hashemi
Dear SIESTA users, Hello and good day! I am trying to get the isosurface of a nanotube usind grid2cube tool and LDOS. The problem is that I am getting wrong values for my unit-cell vectors like 75.58907511097422 0.000 0.000 0.000

Re: [SIESTA-L] eig2dos error

2008-09-26 Thread Javad Hashemi
Dear Zhiyong I haven't done anything about the optical properties unfortunately and I can't help you with that. Cheers Javad On Fri, 26 Sep 2008, zhiyong wang wrote: Dear Javad:   I have a problem about the computing of optical property,if I set some parameters about the optical