[slurm-dev] Re: Exceeded job memory limit problem

2017-09-08 Thread E V
me --mem=18000 -D $(pwd) submit_job.sh >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> From: Sema Atasever <s.atase...@gmail.com<mailto:s.atase...@gmail.com>> >>>> >>>&g

[slurm-dev] Re: Exceeded job memory limit problem

2017-09-07 Thread Chris Harwell
>> >> >> >> From: Sema Atasever <s.atase...@gmail.com<mailto:s.atase...@gmail.com>> >> >> Reply-To: slurm-dev <slurm-dev@schedmd.com<mailto:slurm-dev@schedmd.com>> >> >> Date: Thursday 24 August 2017 at 15:58 >> >> T

[slurm-dev] Re: Exceeded job memory limit problem

2017-09-06 Thread Christopher Samuel
On 06/09/17 17:38, Sema Atasever wrote: > I tried the line of code what you recommended but the code still > generates an error unfortunately. We've seen issues where using: JobAcctGatherType=jobacct_gather/linux gathers incorrect values for jobs (in our experience MPI ones). We constrain

[slurm-dev] Re: Exceeded job memory limit problem

2017-09-06 Thread Daniel Letai
Title: Re: [slurm-dev] Re: Exceeded job memory limit problem Do you have enough memory on your nodes? what's the output of sinfo -n -O nodelist,memory:20 You might not have enough memory on the nodes for the dataset. On 09/06/2017 10:36 AM, Sema

[slurm-dev] Re: Exceeded job memory limit problem

2017-09-06 Thread Sema Atasever
t; > > > > > > > From: Sema Atasever <s.atase...@gmail.com<mailto:s.atase...@gmail.com>> > > Reply-To: slurm-dev <slurm-dev@schedmd.com<mailto:slurm-dev@schedmd.com>> > > Date: Thursday 24 August 2017 at 15:58 > > To: slurm-dev <s

[slurm-dev] Re: Exceeded job memory limit problem

2017-08-25 Thread John DeSantis
Sema, You could temporarily disable the enforcement of memory, in an effort to see what the daemons are reporting the job(s) as using. Simply update the parameter "MemLimitEnforce" in your slurm.conf. I'd only recommend doing this for a very short period though. You definitely don't want

[slurm-dev] Re: Exceeded job memory limit problem

2017-08-23 Thread Lev Lafayette
On Wed, 2017-08-23 at 01:26 -0600, Sema Atasever wrote: > > > Computing predictions by SVM... > slurmstepd: Job 3469 exceeded memory limit (4235584 > 2048000), being > killed > slurmstepd: Exceeded job memory limit > > > How can i fix this problem. > Error messages often give useful