[slurm-dev] Re: Allocating at logical core level and binding separate physical cores first

2017-02-08 Thread andrealphus
srun --cpu_bind=cores On Wed, Feb 8, 2017 at 1:08 PM, Brendan Moloney wrote: > Hi, > > I want to allocate at the level of logical cores (each serial job gets one > thread on a hyperthreading system), which seems to be achievable only by > not setting threads_per_core

[slurm-dev] Re: Allocating at logical core level and binding separate physical cores first

2017-02-08 Thread andrealphus
(clumsy fingers) if I understand your question correctly, but maybe; srun --cpu_bind=threads On Wed, Feb 8, 2017 at 4:02 PM, andrealphus <andrealp...@gmail.com> wrote: > srun --cpu_bind=cores > > On Wed, Feb 8, 2017 at 1:08 PM, Brendan Moloney <moloney.bren...@gmail.com

[slurm-dev] single node workstation

2016-09-06 Thread andrealphus
Hi all, Long time Torque user, first time SLURM user. I'm running version 15.08 from APT on Ubuntu Xenial. (running on an 18 core CPU E5-2697 v4) I'm trying to figure out the proper slurm.conf configuration, and script parameters to run a job array on a single node/server workstation, with more

[slurm-dev] Re: single node workstation

2016-09-06 Thread andrealphus
spoke too soon, so for posterity need to set, in the conf; SelectType=select/con_res SelectTypeParameters=CR_CPU and in the script; #SBATCH --threads-per-core=1 and DefMemPerCPU, did not matter... On Tue, Sep 6, 2016 at 3:08 PM, andrealphus <andrealp...@gmail.com> wrote: >

[slurm-dev] Re: single node workstation

2016-09-06 Thread andrealphus
ters=CR_CPU > > then you should be able to get to all 36. > > cheers > L. > > -- > The most dangerous phrase in the language is, "We've always done it this > way." > > - Grace Hopper > > On 7 September 2016 at 10:22, andrealphus <andrealp...@g

[slurm-dev] Re: single node workstation

2016-09-06 Thread andrealphus
've always done it this > way." > > - Grace Hopper > > On 7 September 2016 at 10:39, andrealphus <andrealp...@gmail.com> wrote: >> >> >> Thanks Lachman, took threads-per-core and out same behavior, still >> limited to 18. >> >> On Tu

[slurm-dev] Re: single node workstation

2016-09-06 Thread andrealphus
one more follow up This seems to limited to the number of cores. Anyway to change it so that I can run up to the thread limit (18x2) concurrently? Thanks! On Tue, Sep 6, 2016 at 3:21 PM, andrealphus <andrealp...@gmail.com> wrote: > > spoke too soon, so for posterity >

[slurm-dev] Re: cpu identifier

2016-09-14 Thread andrealphus
Thanks Christopher! On Wed, Sep 14, 2016 at 4:30 PM, Christopher Samuel <sam...@unimelb.edu.au> wrote: > > On 15/09/16 05:20, andrealphus wrote: > >> On a side note, any idea if there is a parameter to not >> have it use a particular cpu? This is a single node wo

[slurm-dev] Re: single node workstation

2016-09-08 Thread andrealphus
p.s. same issue on v16 On Wed, Sep 7, 2016 at 9:57 AM, andrealphus <andrealp...@gmail.com> wrote: > > p.s. it's listing 36 processors with sinfo, and that theyre all being > used, but it only running 18 jobs. So it looks like while it can see > the 36 "processors" its

[slurm-dev] cpu identifier

2016-09-13 Thread andrealphus
is there an environmental variable available in sbatch that holds the cpu/s the current job is being run on? (not the number of cpus, but a cpu identifier).

[slurm-dev] Re: Configuring slurm to use all CPUs on a node

2016-09-12 Thread andrealphus
, Sep 12, 2016 at 9:46 AM, alex straza <strza123...@gmail.com> wrote: > Thanks Ashton, your solution worked. > > Uwe - don't know if your solution would have worked since I tried this > first, but thanks in any case! > > On Mon, Sep 12, 2016 at 12:12 PM, andrealphus <a

[slurm-dev] Re: Configuring slurm to use all CPUs on a node

2016-09-12 Thread andrealphus
Hi Alex! Please try this solution first, as I just went through this exact same issue over the past two weeks, and believe setting anything related to cores/sockets/threads will not work. Leave; SelectType=select/cons_res SelectTypeParameters=CR_CPU But in the node configuration you need to

[slurm-dev] Re: CPUs and Hyperthreading and etc

2016-09-22 Thread andrealphus
wait, out of curiosity; "Sockets=2 CoresPerSocket=10 ThreadsPerCore=2 CPUs are set to 40 and SelectTypeParameters=CR_CPU" this is actually allowing you to run 40 processes? When I tried it, it showed 40 available cpus, but would only allocate at the core level, not thread level, and hence was a

[slurm-dev] Re: single node workstation

2016-09-07 Thread andrealphus
, andrealphus <andrealp...@gmail.com> wrote: > > a..I'll give that a try. Thanks Lachlan, feel better! > > On Tue, Sep 6, 2016 at 6:49 PM, Lachlan Musicman <data...@gmail.com> wrote: >> No, sorry, I meant that your config file line needs to change: >> >> >&

[slurm-dev] Re: single node workstation

2016-09-07 Thread andrealphus
:05 1 localhost sinfo -o %C CPUS(A/I/O/T) 36/0/0/36 On Wed, Sep 7, 2016 at 9:41 AM, andrealphus <andrealp...@gmail.com> wrote: > > I tried changing the CPU flag int eh compute node section of the conf > file to 36, but it didnt make a difference, still limited to 18. Also > tried r

[slurm-dev] Re: Can slurm work on one node?

2016-10-31 Thread andrealphus
did you install munge? On Mon, Oct 31, 2016 at 7:11 AM, Peixin Qiao wrote: > Hi Lachlan, > > My slurm.conf is as follows: > > # slurm.conf file generated by configurator easy.html. > # Put this file on all nodes of your cluster. > # See the slurm.conf man page for more

[slurm-dev] Re: job array fail

2016-10-28 Thread andrealphus
and of course right after sending a message, I found it MaxArraySize On Fri, Oct 28, 2016 at 5:27 PM, andrealphus <andrealp...@gmail.com> wrote: > > I must be missing a setting somewhere, but when I try to submit a job > array with several thousand jobs in it it fails with;

[slurm-dev] power cut

2016-12-06 Thread andrealphus
Looks like I over the weekend our building lost power, and I'm assuming my backup didn't keep my single node workstation up and running very long. When I came in this morning, I saw that the machine had restarted and that slurm must have restarted the failed jobs (?) (slurm/munge is set up to