[spctools-discuss] Re: Error using mzXML.gz as input

2009-03-03 Thread Oded
Hi Brian, Thanks for the quick reply - this fix does solve the search results file name issue but now there are problems with viewing the spectra (using pepXML viewer) which lead to Windows error message saying: plot-msms.cgi has encountered a problem and needs to close. We are sorry for the

[spctools-discuss] Re: Error using mzXML.gz as input

2009-03-03 Thread Brian Pratt
Hi Oded, If you'll put the offending file on ftp://insilicos.serveftp.net/pub I'll see what I can find out. Thanks, Brian -Original Message- From: spctools-discuss@googlegroups.com [mailto:spctools-disc...@googlegroups.com] On Behalf Of Oded Sent: Tuesday, March 03, 2009 1:25 AM To:

[spctools-discuss] Re: [PeptideProphet]How to define accurate mass

2009-03-03 Thread David Shteynberg
Hi Jun, You should use the accurate mass model when you are processing data from high-mass-accuracy instruments (e.g. Orbitrap and FT) and you are using monoisotopic precursor masses in your search params. -David On Mon, Mar 2, 2009 at 9:31 PM, jun junster@gmail.com wrote: Hi, everyone.