hi everyone,
There is a problem with my protein prophet. It cannot display the
results and shows the following error.
c:/Inetpub/wwwroot/ISB/data/probidoutput/swissprot/interact.prot.shtml
[ Unreadable! ]
If I choose the pre-generate static html file for loading to browser
option when running
Dear all,
I have TPP v4.3 installed on WindowsXP. I do not install cygwin and
run the following lines in the MS DOS command or through the TPP GUI.
Unknown error occurs during iterations in PeptideProphetParser. Can
you have me some advice on this?
Thank you very much in advance!
Best regards,
Hello Melody,
It appears you've discovered a bug in the code with this particular
analysis. Would you please zip up the data directory (or just the
analysis*.xml files) and post them to our ftp site, instructions here:
If you run the Sequest search through the TPP GUI interface or via the
runsearch.exe wrapper on the command line, it would pack up and
compress the search results folder and delete the corresponding
directory (of dta/outs). You obviously don't need to keep the folders
around if you have no use
Dear friends,
If I want to use the following PTM:
Monoisotopic: -18.010565 Site:N Position: Protein C-term
How should I set the input.xml parameters?
1. note type=input label=refine, potential C-terminus
modifications-18.010...@n/note
or
2.note type=input label=refine,
#2. see http://www.thegpm.org/TANDEM/api/refpctm.html
I hate to state the obvious but this will only be applied in
refinement mode so make sure that's turned on.
On Wed, Sep 16, 2009 at 2:44 PM, rhodea rho...@gmail.com wrote:
Dear friends,
If I want to use the following PTM:
Monoisotopic:
