Dear Sir/Madam,
I have a query related to PTMprophet analysis. I performed comet search for an mzml file and put it for further analysis as under: -Using TPP tools Analyse peptides Checked for iprophet proteinprophet PTMprophet -Mass added for PTMs were: - 79.966 Da for Phosphorylation- STY I filtered the data on the basis of error table values. - I exported the excel showing results as under. [image: image.png] *Query: Everything is fine except that the position of modified amino acid is not there, only the mass is there and amino acid is highlighted. * *How can I get to know the modified site (I mean exact position of modified amino acid?* *Is there a way that I can get these modified sites with respect to protein. e.g. S27 or T82 etc. * Could you please help me for this. Thanks and regards, *Mehar Un Nissa* Research Scholar, Proteomics Lab. Department of Biosciences and Bioengineering, Indian Institute of Technology, Bombay-400076 -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/spctools-discuss/CAH%2BQocrxGcaRHLvSdXX1hq5xBMOgknqnbU9Ex_isWF4%2BR1%3DhDQ%40mail.gmail.com.
