Dear all, I have TPP v4.3 installed on WindowsXP. I do not install cygwin and run the following lines in the MS DOS command or through the TPP GUI. Unknown error occurs during iterations in PeptideProphetParser. Can you have me some advice on this?
Thank you very much in advance! Best regards, Melody Lam I run the following command at the directory C:\Inetpub\wwwroot\ISB \data\swissprot "c:\Inetpub\tpp-bin\xinteract -Ninteract.pep.xml -p0.05 -l7 -OAm c:/ Inetpub/wwwroot/ISB/data/swissprot/analysis100.xml c:/Inetpub/wwwroot/ ISB/data/swissprot/analysis125.xml c:/Inetpub/wwwroot/ISB/data/ swissprot/analysis150.xml c:/Inetpub/wwwroot/ISB/data/swissprot/ analysis200.xml c:/Inetpub/wwwroot/ISB/data/swissprot/analysis25.xml c:/Inetpub/wwwroot/ISB/data/swissprot/analysis460.xml c:/Inetpub/ wwwroot/ISB/data/swissprot/analysis50.xml c:/Inetpub/wwwroot/ISB/data/ swissprot/analysis500.xml c:/Inetpub/wwwroot/ISB/data/swissprot/ analysis75.xml c:/Inetpub/wwwroot/ISB/data/swissprot/ analysisunbind.xml" Totally 10 xml files from OUT2XML are added. -------------------------- Here are the outputs: c:\Inetpub\tpp-bin\xinteract (TPP v4.3 JETSTREAM rev 0, Build 200908071234 (MinGW)) running: "C:/Inetpub/tpp-bin/InteractParser "C:/Inetpub/wwwroot/tmp/ a02932/ISB/data/swissprot/interact.pep.xml" "c:/Inetpub/wwwroot/ISB/ data/swissprot/analysis100.xml" "c:/Inetpub/wwwroot/ISB/data/swissprot/ analysis125.xml" "c:/Inetpub/wwwroot/ISB/data/swissprot/ analysis150.xml" "c:/Inetpub/wwwroot/ISB/data/swissprot/ analysis200.xml" "c:/Inetpub/wwwroot/ISB/data/swissprot/ analysis25.xml" "c:/Inetpub/wwwroot/ISB/data/swissprot/ analysis460.xml" "c:/Inetpub/wwwroot/ISB/data/swissprot/ analysis50.xml" "c:/Inetpub/wwwroot/ISB/data/swissprot/ analysis500.xml" "c:/Inetpub/wwwroot/ISB/data/swissprot/ analysis75.xml" "c:/Inetpub/wwwroot/ISB/data/swissprot/ analysisunbind.xml" -L"7"" file 1: c:/Inetpub/wwwroot/ISB/data/swissprot/analysis100.xml file 2: c:/Inetpub/wwwroot/ISB/data/swissprot/analysis125.xml file 3: c:/Inetpub/wwwroot/ISB/data/swissprot/analysis150.xml file 4: c:/Inetpub/wwwroot/ISB/data/swissprot/analysis200.xml file 5: c:/Inetpub/wwwroot/ISB/data/swissprot/analysis25.xml file 6: c:/Inetpub/wwwroot/ISB/data/swissprot/analysis460.xml file 7: c:/Inetpub/wwwroot/ISB/data/swissprot/analysis50.xml file 8: c:/Inetpub/wwwroot/ISB/data/swissprot/analysis500.xml file 9: c:/Inetpub/wwwroot/ISB/data/swissprot/analysis75.xml file 10: c:/Inetpub/wwwroot/ISB/data/swissprot/analysisunbind.xml processed altogether 9098 results results written to file c:/Inetpub/wwwroot/tmp/a02932/ISB/data/ swissprot/interact.pep.xml direct your browser to http://localhost/interact.pep.shtml command completed in 6 sec running: "C:/Inetpub/tpp-bin/PeptideProphetParser "C:/Inetpub/wwwroot/ tmp/a02932/ISB/data/swissprot/interact.pep.xml" MINPROB=0.05 ACCMASS MALDI" using Accurate Mass Bins maldi mode (PROBID) adding Accurate Mass mixture distr init with PROBID Trypsin MS Instrument info: Manufacturer: UNKNOWN, Model: UNKNOWN, Ionization: UNKNOWN, Analyzer: UNKNOWN, Detector: UNKNOWN PeptideProphet (TPP v4.3 JETSTREAM rev 0, Build 200908071234 (MinGW)) AKeller@ ISB read in 8872 1+, 0 2+, 0 3+, 0 4+, 0 5+, 0 6+, and 0 7+ spectra. Initialising statistical models ... Iterations: .........10.........20 ------------------------------------------------------------ The Error dialog box pop up at this point during the iterations!!! I clicked "Don't send" on the box which ask if I should send any error report to Microsoft ------------------------------------------------------------ The following appears after clicking "Don't Send" command "C:/Inetpub/tpp-bin/PeptideProphetParser "C:/Inetpub/wwwroot/ tmp/a02932/ ISB/data/swissprot/interact.pep.xml" MINPROB=0.05 ACCMASS MALDI" failed: Unknown error command "C:/Inetpub/tpp-bin/PeptideProphetParser "C:/Inetpub/wwwroot/ tmp/a02932/ ISB/data/swissprot/interact.pep.xml" MINPROB=0.05 ACCMASS MALDI" exited with non -zero exit code: -1073741819 QUIT - the job is incomplete --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to spctools-discuss@googlegroups.com To unsubscribe from this group, send email to spctools-discuss+unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en -~----------~----~----~----~------~----~------~--~---
