It looks like the failure is in the RT model. Please disable RT and try the analysis again.
Thanks, -David On Tue, Jun 22, 2010 at 3:58 AM, KMackay <skippymac...@googlemail.com> wrote: > Hi, I am getting an unreadable tag on the ProteinProphet results file > and the file is not visible in the output folder. The error message > is as follows... anyone know how I could investigate/fix this? > > Thanks > > ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > > PeptideProphet (TPP v4.3 JETSTREAM rev 1, Build 200909091257 > (MinGW)) akel...@isb > read in 1 1+, 58105 2+, 50637 3+, 10518 4+, 1848 5+, 376 6+, and 134 > 7+ spectra. > Initialising statistical models ... > Iterations: .........10.........20.....Estimating Retention Time > Model ... please wait ... > Assertion failed: probs->size() == run_RT_count_, file Parsers/ > Algorithm2XML/RTCalculator.cxx, line 279 > > This application has requested the Runtime to terminate it in an > unusual way. > Please contact the application's support team for more information. > > command "C:/Inetpub/tpp-bin/PeptideProphetParser "interact.pep.xml" > MINPROB=0.05 PI RT" failed: Unknown error > > command "C:/Inetpub/tpp-bin/PeptideProphetParser "interact.pep.xml" > MINPROB=0.05 PI RT" exited with non-zero exit code: 255 > QUIT - the job is incomplete > > command "c:\Inetpub\tpp-bin\xinteract -Ninteract.pep.xml -p0.05 -l7 - > OIRp c:/Inetpub/wwwroot/ISB/data/F006085.pep.xml c:/Inetpub/wwwroot/ > ISB/data/F006087.pep.xml c:/Inetpub/wwwroot/ISB/data/F006138.pep.xml > c:/Inetpub/wwwroot/ISB/data/F006139.pep.xml c:/Inetpub/wwwroot/ISB/ > data/F006140.pep.xml c:/Inetpub/wwwroot/ISB/data/F006141.pep.xml c:/ > Inetpub/wwwroot/ISB/data/F006142.pep.xml c:/Inetpub/wwwroot/ISB/data/ > F006143.pep.xml c:/Inetpub/wwwroot/ISB/data/F006144.pep.xml c:/Inetpub/ > wwwroot/ISB/data/F006145.pep.xml" failed: Unknown error > > Command FAILED > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to spctools-disc...@googlegroups.com. > To unsubscribe from this group, send email to > spctools-discuss+unsubscr...@googlegroups.com. > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to spctools-disc...@googlegroups.com. To unsubscribe from this group, send email to spctools-discuss+unsubscr...@googlegroups.com. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
