Hello, I was trying to run peptide analysis with PeptideProphet but it keeps showig me error... I was using dimethyl labeling technique and peptides were identified using Mascot. I exported all data from Mascot, uploaded here and it fails to do anything. I was wondering whether anyone could advice me what should I do with it? I would be grateful for some help.
Here is what it shows me: C:/TPP/bin/xinteract (TPP v5.0.0 Typhoon, Build 201610111222-7423 (Windows_NT-x86_64)) PPM mode in Accurate Mass Model ... C:\TPP\bin\mkdir.exe: cannot create directory `/tmp\a09964\': File exists command "C:\TPP\bin\mkdir.exe -p "/tmp/a09964/"" failed: Operation not permitted could not create temp dir /tmp/a09964/, working in data directory running: "C:/TPP/bin/InteractParser "interact.pep.xml" "H7(3).pep.xml" "h7(3).xml" -L"7"" file 1: H7(3).pep.xmlWARNING: empty raw_data in msms_run_summary tag ... trying mzML ... Failed to open input file 'c:/TPP/data/.mzML'.WARNING: cannot open data file c:/TPP/data/.mzML in msms_run_summary tag ...... trying .mzXML ... Failed to open input file 'c:/TPP/data/.mzXML'.WARNING: cannot CORRECT data file c:/TPP/data/.mzXML in msms_run_summary tag ...WARNING: empty raw_data in msms_run_summary tag ... trying mzML ... Failed to open input file 'c:/TPP/data/.mzML'.WARNING: cannot open data file c:/TPP/data/.mzML in msms_run_summary tag ...... trying .mzXML ... Failed to open input file 'c:/TPP/data/.mzXML'.WARNING: cannot CORRECT data file c:/TPP/data/.mzXML in msms_run_summary tag ... Kind Regards, Ada -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To post to this group, send email to spctools-discuss@googlegroups.com. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
