Hi guys,
When applying the pipeline *msconvert (mgf to mzML) -> comet ->
peptideprophet + libra*, I get wrong assignment of the spectra. It looks
that identifications are taken looking for *spectrum* while iTRAQ reporter
ion intensities were retrieved by matching *spectrumNativeID*. As you can
Hi David,
I just posted some explanation where the error came from but cannot see the
post anymore. Did you get it?
Best regards
Veit
On Friday, 14 October 2016 18:10:52 UTC+2, David Shteynberg wrote:
>
> Hi Magnus,
>
> From the error message it seems like it is failing in boost because one of
Hi guys!
I think we nailed the problem down to two issues:
a) Empty lines in the pep.xml files lead to a segmentation fault in
PTMProphetParser. This can be fixed by substituting
*data = strstr(nextline, "<"); while(data != NULL) {*
by
*while(data != NULL && data != "") {*
*
work in TPP 4.8.0 as well as 5.0.0.
>
> Hope this (still) helps!
> --Luis
>
>
> On Mon, Jan 30, 2017 at 11:03 PM, Veit Schwaemmle <veitv...@gmail.com>
> wrote:
>
>> Hi guys,
>>
>> When applying the pipeline *msconvert (mgf to mzML) -> comet ->
>
