subject:"\[spctools\-discuss\] TPP build issues on an Ubuntu 17 system"

RE: [spctools-discuss] TPP build issues on an Ubuntu 17 system

2018-02-20 Thread Eric Deutsch

Hi, is it really "idcovert" as you quoted? Or is the error about "idconvert"
?



*From:* spctools-discuss@googlegroups.com [mailto:
spctools-discuss@googlegroups.com] *On Behalf Of *
ku...@healthtechnologyinnovations.com
*Sent:* Sunday, February 18, 2018 12:32 PM
*To:* spctools-discuss <spctools-discuss@googlegroups.com>
*Subject:* Re: [spctools-discuss] TPP build issues on an Ubuntu 17 system



Thanks, Eric.  I made some progress (but not enough!).  Here is what I did:



cd  build/gnu-x86-64/artifacts directory



$ aclocal

$ automake

$ make



This helped resolve the libtools issue. Went back to the release directory
and tried to make all.

Surprisingly, the make went on for over 30 minutes (I assume progress) but
stopped due to "idcovert".  It could not find it.

I found a directory with source code for idconvert, msconvert etc. but the
Makefile in that directory does not make the binaries.  Do you know where I
could find them?

Thanks



On Tuesday, February 13, 2018 at 3:02:42 PM UTC-8, Eric Deutsch wrote:

Hi, we haven’t tried to install it on Ubuntu 17, only the 16.04 LTS, with
the recipe you found. So I can’t really help much at this point. I googled
a little and found this:



https://stackoverflow.com/questions/3096989/libtool-version-mismatch-error



Does this help maybe? If you do figure it out, please post the diffs from
the instructions from 16 to 17.



Thanks,

Eric





*From:* spctools...@googlegroups.com  [mailto:
spctools...@googlegroups.com ] *On Behalf Of *
ku...@healthtechnologyinnovations.com 
*Sent:* Monday, February 12, 2018 5:08 PM
*To:* spctools-discuss <spctools...@googlegroups.com >
*Subject:* [spctools-discuss] TPP build issues on an Ubuntu 17 system



Ladies and gents:



I am trying to generate TPP from source. Here is what I did:



I have an Ubuntu 17 machine (Intel Xenon + Nvidia system).

Followed the instructions posted at
http://tools.proteomecenter.org/wiki/index.php?title=TPP_5.1.0:_Installing_on_Ubuntu_16.04_LTS
:

1) Installed the prerequisite packages, with no errors

2) Created the suitable place to install

3) Pulled the 5.1.0 source code

4) Created the site.mk (as per the instructions)



When trying to make libgd, I started running into issues:

First, I got this:



WARNING: 'automake-1.14' is missing on your system.

 You should only need it if you modified 'Makefile.am' or

 'configure.ac' or m4 files included by 'configure.ac'.

 The 'automake' program is part of the GNU Automake package:

 <http://www.gnu.org/software/automake>

 It also requires GNU Autoconf, GNU m4 and Perl in order to run:

 <http://www.gnu.org/software/autoconf>

 <http://www.gnu.org/software/m4/>

 <http://www.perl.org/>

Makefile:337: recipe for target 'Makefile.in' failed

make: *** [Makefile.in] Error 1

I resolved it using this:

cd build/gnu-x86_64/artifacts/libpng-1.5.19

$ aclocal

$ automake

$ make

I have automake-1.15 and the above steps helped me go past that issue.



Now I am at this compile issue, which seems to be very difficult to
resolve.





touch config.h.in

cd . && /bin/bash ./config.status config.h

config.status: creating config.h

/bin/bash ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H
-I.  -DPNG_CONFIGURE_LIBPNG   -g -O2 -MT libpng15_la-png.lo -MD -MP -MF
.deps/libpng15_la-png.Tpo -c -o libpng15_la-png.lo `test -f 'png.c' || echo
'./'`png.c

libtool: Version mismatch error.  This is libtool 2.4.2, but the

libtool: definition of this LT_INIT comes from libtool 2.4.6.

libtool: You should recreate aclocal.m4 with macros from libtool 2.4.2

libtool: and run autoconf again.

Makefile:797: recipe for target 'libpng15_la-png.lo' failed

make[1]: *** [libpng15_la-png.lo] Error 63

make[1]: Leaving directory
'/local/svn/release_5-1-0/build/gnu-x86_64/artifacts/libpng-1.5.19'

extern/Makefile:893: recipe for target
'/local/svn/release_5-1-0/build/gnu-x86_64/lib/libpng.a' failed

make: *** [/local/svn/release_5-1-0/build/gnu-x86_64/lib/libpng.a] Error 2



Googling libtool issues, I am not getting anywhere.

Any help would greatly be appreciated: Has anyone tried building in Ubuntu
17?



Thanks

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Re: [spctools-discuss] TPP build issues on an Ubuntu 17 system

2018-02-18 Thread kumar

Thanks, Eric.  I made some progress (but not enough!).  Here is what I did:

cd  build/gnu-x86-64/artifacts directory

$ aclocal
$ automake
$ make


This helped resolve the libtools issue. Went back to the release directory 
and tried to make all.
Surprisingly, the make went on for over 30 minutes (I assume progress) but 
stopped due to "idcovert".  It could not find it.
I found a directory with source code for idconvert, msconvert etc. but the 
Makefile in that directory does not make the binaries.  Do you know where I 
could find them?
Thanks


On Tuesday, February 13, 2018 at 3:02:42 PM UTC-8, Eric Deutsch wrote:
>
> Hi, we haven’t tried to install it on Ubuntu 17, only the 16.04 LTS, with 
> the recipe you found. So I can’t really help much at this point. I googled 
> a little and found this:
>
>  
>
> https://stackoverflow.com/questions/3096989/libtool-version-mismatch-error
>
>  
>
> Does this help maybe? If you do figure it out, please post the diffs from 
> the instructions from 16 to 17.
>
>  
>
> Thanks,
>
> Eric
>
>  
>
>  
>
> *From:* spctools...@googlegroups.com  [mailto:
> spctools...@googlegroups.com ] *On Behalf Of *
> ku...@healthtechnologyinnovations.com 
> *Sent:* Monday, February 12, 2018 5:08 PM
> *To:* spctools-discuss <spctools...@googlegroups.com >
> *Subject:* [spctools-discuss] TPP build issues on an Ubuntu 17 system
>
>  
>
> Ladies and gents:
>
>  
>
> I am trying to generate TPP from source. Here is what I did:
>
>  
>
> I have an Ubuntu 17 machine (Intel Xenon + Nvidia system).
>
> Followed the instructions posted at 
> http://tools.proteomecenter.org/wiki/index.php?title=TPP_5.1.0:_Installing_on_Ubuntu_16.04_LTS
> :
>
> 1) Installed the prerequisite packages, with no errors
>
> 2) Created the suitable place to install
>
> 3) Pulled the 5.1.0 source code
>
> 4) Created the site.mk (as per the instructions)
>
>  
>
> When trying to make libgd, I started running into issues: 
>
> First, I got this:
>
>  
>
> WARNING: 'automake-1.14' is missing on your system.
>
>  You should only need it if you modified 'Makefile.am' or
>
>  'configure.ac' or m4 files included by 'configure.ac'.
>
>  The 'automake' program is part of the GNU Automake package:
>
>  <http://www.gnu.org/software/automake>
>
>  It also requires GNU Autoconf, GNU m4 and Perl in order to run:
>
>  <http://www.gnu.org/software/autoconf>
>
>  <http://www.gnu.org/software/m4/>
>
>  <http://www.perl.org/>
>
> Makefile:337: recipe for target 'Makefile.in' failed
>
> make: *** [Makefile.in] Error 1
>
> I resolved it using this:
>
> cd build/gnu-x86_64/artifacts/libpng-1.5.19
>
> $ aclocal
>
> $ automake
>
> $ make
>
> I have automake-1.15 and the above steps helped me go past that issue.
>
>  
>
> Now I am at this compile issue, which seems to be very difficult to 
> resolve.  
>
>  
>
> 
>
> touch config.h.in
>
> cd . && /bin/bash ./config.status config.h
>
> config.status: creating config.h
>
> /bin/bash ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  
> -DPNG_CONFIGURE_LIBPNG   -g -O2 -MT libpng15_la-png.lo -MD -MP -MF 
> .deps/libpng15_la-png.Tpo -c -o libpng15_la-png.lo `test -f 'png.c' || echo 
> './'`png.c
>
> libtool: Version mismatch error.  This is libtool 2.4.2, but the
>
> libtool: definition of this LT_INIT comes from libtool 2.4.6.
>
> libtool: You should recreate aclocal.m4 with macros from libtool 2.4.2
>
> libtool: and run autoconf again.
>
> Makefile:797: recipe for target 'libpng15_la-png.lo' failed
>
> make[1]: *** [libpng15_la-png.lo] Error 63
>
> make[1]: Leaving directory 
> '/local/svn/release_5-1-0/build/gnu-x86_64/artifacts/libpng-1.5.19'
>
> extern/Makefile:893: recipe for target 
> '/local/svn/release_5-1-0/build/gnu-x86_64/lib/libpng.a' failed
>
> make: *** [/local/svn/release_5-1-0/build/gnu-x86_64/lib/libpng.a] Error 2
>
>  
>
> Googling libtool issues, I am not getting anywhere.
>
> Any help would greatly be appreciated: Has anyone tried building in Ubuntu 
> 17?
>
>  
>
> Thanks
>
> -- 
> You received this message because you are subscribed to the Google Groups 
> "spctools-discuss" group.
> To unsubscribe from this group and stop receiving emails from it, send an 
> email to spctools-discu...@googlegroups.com .
> To post to this group, send email to spctools...@googlegroups.com 
> .
> Visit this group at https://groups.google.com/group/spctools-discuss.
> For more options, visit https://groups.google.com/d/optout.
>

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RE: [spctools-discuss] TPP build issues on an Ubuntu 17 system

2018-02-13 Thread Eric Deutsch

Hi, we haven’t tried to install it on Ubuntu 17, only the 16.04 LTS, with
the recipe you found. So I can’t really help much at this point. I googled
a little and found this:



https://stackoverflow.com/questions/3096989/libtool-version-mismatch-error



Does this help maybe? If you do figure it out, please post the diffs from
the instructions from 16 to 17.



Thanks,

Eric





*From:* spctools-discuss@googlegroups.com [mailto:
spctools-discuss@googlegroups.com] *On Behalf Of *
ku...@healthtechnologyinnovations.com
*Sent:* Monday, February 12, 2018 5:08 PM
*To:* spctools-discuss <spctools-discuss@googlegroups.com>
*Subject:* [spctools-discuss] TPP build issues on an Ubuntu 17 system



Ladies and gents:



I am trying to generate TPP from source. Here is what I did:



I have an Ubuntu 17 machine (Intel Xenon + Nvidia system).

Followed the instructions posted at
http://tools.proteomecenter.org/wiki/index.php?title=TPP_5.1.0:_Installing_on_Ubuntu_16.04_LTS
:

1) Installed the prerequisite packages, with no errors

2) Created the suitable place to install

3) Pulled the 5.1.0 source code

4) Created the site.mk (as per the instructions)



When trying to make libgd, I started running into issues:

First, I got this:



WARNING: 'automake-1.14' is missing on your system.

 You should only need it if you modified 'Makefile.am' or

 'configure.ac' or m4 files included by 'configure.ac'.

 The 'automake' program is part of the GNU Automake package:

 <http://www.gnu.org/software/automake>

 It also requires GNU Autoconf, GNU m4 and Perl in order to run:

 <http://www.gnu.org/software/autoconf>

 <http://www.gnu.org/software/m4/>

 <http://www.perl.org/>

Makefile:337: recipe for target 'Makefile.in' failed

make: *** [Makefile.in] Error 1

I resolved it using this:

cd build/gnu-x86_64/artifacts/libpng-1.5.19

$ aclocal

$ automake

$ make

I have automake-1.15 and the above steps helped me go past that issue.



Now I am at this compile issue, which seems to be very difficult to
resolve.





touch config.h.in

cd . && /bin/bash ./config.status config.h

config.status: creating config.h

/bin/bash ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.
-DPNG_CONFIGURE_LIBPNG   -g -O2 -MT libpng15_la-png.lo -MD -MP -MF
.deps/libpng15_la-png.Tpo -c -o libpng15_la-png.lo `test -f 'png.c' || echo
'./'`png.c

libtool: Version mismatch error.  This is libtool 2.4.2, but the

libtool: definition of this LT_INIT comes from libtool 2.4.6.

libtool: You should recreate aclocal.m4 with macros from libtool 2.4.2

libtool: and run autoconf again.

Makefile:797: recipe for target 'libpng15_la-png.lo' failed

make[1]: *** [libpng15_la-png.lo] Error 63

make[1]: Leaving directory
'/local/svn/release_5-1-0/build/gnu-x86_64/artifacts/libpng-1.5.19'

extern/Makefile:893: recipe for target
'/local/svn/release_5-1-0/build/gnu-x86_64/lib/libpng.a' failed

make: *** [/local/svn/release_5-1-0/build/gnu-x86_64/lib/libpng.a] Error 2



Googling libtool issues, I am not getting anywhere.

Any help would greatly be appreciated: Has anyone tried building in Ubuntu
17?



Thanks

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[spctools-discuss] TPP build issues on an Ubuntu 17 system

2018-02-12 Thread kumar

Ladies and gents:

I am trying to generate TPP from source. Here is what I did:

I have an Ubuntu 17 machine (Intel Xenon + Nvidia system).
Followed the instructions posted at
http://tools.proteomecenter.org/wiki/index.php?title=TPP_5.1.0:_Installing_on_Ubuntu_16.04_LTS
:
1) Installed the prerequisite packages, with no errors
2) Created the suitable place to install
3) Pulled the 5.1.0 source code
4) Created the site.mk (as per the instructions)

When trying to make libgd, I started running into issues:
First, I got this:

WARNING: 'automake-1.14' is missing on your system.
You should only need it if you modified 'Makefile.am' or
'configure.ac' or m4 files included by 'configure.ac'.
The 'automake' program is part of the GNU Automake package:

It also requires GNU Autoconf, GNU m4 and Perl in order to run:

Makefile:337: recipe for target 'Makefile.in' failed
make: *** [Makefile.in] Error 1

I resolved it using this:
cd build/gnu-x86_64/artifacts/libpng-1.5.19

$ aclocal
$ automake
$ make

I have automake-1.15 and the above steps helped me go past that issue.

Now I am at this compile issue, which seems to be very difficult to
resolve.

touch config.h.in

cd . && /bin/bash ./config.status config.h

config.status: creating config.h

/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I.
-DPNG_CONFIGURE_LIBPNG -g -O2 -MT libpng15_la-png.lo -MD -MP -MF
.deps/libpng15_la-png.Tpo -c -o libpng15_la-png.lo `test -f 'png.c' || echo
'./'`png.c

libtool: Version mismatch error. This is libtool 2.4.2, but the

libtool: definition of this LT_INIT comes from libtool 2.4.6.

libtool: You should recreate aclocal.m4 with macros from libtool 2.4.2

libtool: and run autoconf again.

Makefile:797: recipe for target 'libpng15_la-png.lo' failed

make[1]: *** [libpng15_la-png.lo] Error 63

make[1]: Leaving directory
'/local/svn/release_5-1-0/build/gnu-x86_64/artifacts/libpng-1.5.19'

extern/Makefile:893: recipe for target
'/local/svn/release_5-1-0/build/gnu-x86_64/lib/libpng.a' failed

make: *** [/local/svn/release_5-1-0/build/gnu-x86_64/lib/libpng.a] Error 2

Googling libtool issues, I am not getting anywhere.
Any help would greatly be appreciated: Has anyone tried building in Ubuntu
17?

Thanks

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RE: [spctools-discuss] TPP build issues on an Ubuntu 17 system

Re: [spctools-discuss] TPP build issues on an Ubuntu 17 system

RE: [spctools-discuss] TPP build issues on an Ubuntu 17 system

[spctools-discuss] TPP build issues on an Ubuntu 17 system

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