Re: [StatET-user] Rj packages

2013-04-30 Thread Stephan Wahlbrink
Hi Olivier, Janssens, Olivier wrote [2013-04-30 10:11]: Hi, Great works ! I believe that all ‘aficionados’ of R appreciate the work done around Statet. I try on Windows XP the integration of R (3.0) with the last version available for download. Unfortunately rj-1.1.3-1 is only available only

Re: [StatET-user] Rj packages

2013-04-30 Thread Stephan Wahlbrink
4.workbench , the project settings and most other settings are kept. Regards, Stephan Many thanks for your answers Olivier -Original Message- From: Stephan Wahlbrink [mailto:stephan.wahlbr...@walware.de] Sent: mardi 30 avril 2013 12:09 To: Janssens, Olivier Cc: statet-user@lists.r-forge.

Re: [StatET-user] statet on ubuntu raring

2013-05-01 Thread Stephan Wahlbrink
Hi Jeroen, Jeroen Ooms wrote [2013-04-30 23:26]: I'm trying to setup statet on ubuntu raring. I installed eclipse 3.8, statet, and rj1.1. However when trying to run R inside eclipse I get the error below. It complains about rj not being available, however it is installed and I can load it inside

Re: [StatET-user] statet on ubuntu raring

2013-05-01 Thread Stephan Wahlbrink
"Detect Default Properties/Settings" in the dialog. Regards, Stephan Sent from my iPod On May 1, 2013, at 4:43, Stephan Wahlbrink wrote: Hi Jeroen, Jeroen Ooms wrote [2013-04-30 23:26]: I'm trying to setup statet on ubuntu raring. I installed eclipse 3.8, statet, and rj1.

Re: [StatET-user] de.walware.rj.RjException: Error starting R node

2013-05-02 Thread Stephan Wahlbrink
by: de.walware.rj.RjException: R node process stopped (exit code = 145). at de.walware.rj.servi.internal.LocalNodeFactory.createNode(LocalNodeFactory.java:462) ... 50 more Cheers, Valentin Valentin Georgiev, PhD Pharmaceutical Bioinformatics BMC, Uppsala University On Apr 10, 2013, at 9:30 AM

Re: [StatET-user] R help HttpServletRequest error

2013-05-17 Thread Stephan Wahlbrink
Hi Michael, Michael Bach wrote [2013-05-16 15:05]: Dear StatET Users and Developers, I am using StatET version 3.0.1 under Eclipse Indigo 3.7.2. When I set things up some time ago, R help worked nicely - presenting the documentation in the 'R Help' view as html. Now I changed some other plugin

Re: [StatET-user] Eclipse StatET and data.table package

2013-05-21 Thread Stephan Wahlbrink
Hi Mehdi, Mehdi Lallouache wrote [2013-05-20 11:43]: Dear StatET users, I am a Ph.D student and I am currenctly using the great data.table package which introduce the syntax *:=* For eclipse, it is a syntax error, but it is not the case in the context of this package. Is there a way to make E

Re: [StatET-user] Updating R environment index failed

2013-06-07 Thread Stephan Wahlbrink
Hi Michael, Michael Bach wrote [2013-06-07 16:03]: Dear StatET Users and Developers, Eclipse 4.2 StatET 3.2 rj 1.1 R 3.0.1 Windows 7 On a fresh install of R, I started the R interpreter and it began [INFO] Updating the R environment index started... but failed with [WARNING] The R environme

Re: [StatET-user] New R console pops up every time I run lines of R code

2013-06-07 Thread Stephan Wahlbrink
Hi Jack, Jike Cui wrote [2013-06-07 17:47]: Hi, I'm using Eclipse 4.2.2 with StatET 3.2.0. It was running fine But recently three R console windows are present after Eclipse starts. And whenever I run a few lines of R code by Ctrl RR, a new console window pops up and all the old console windows

Re: [StatET-user] Update from 3.2 to 3.3 Keybindings

2013-06-12 Thread Stephan Wahlbrink
Hi Michael, Michael Bach wrote [2013-06-10 12:00]: Dear StatET Users and Developers, I upgraded StatET from 3.2 to 3.3 by adding the new update site. Now I noticed that 'eval function at point' (mapped to Ctrl+R, Ctrl+F) did not work anymore. I investigated in the Preferences > General > Keys m

Re: [StatET-user] Auto Activation of Content Assist

2013-06-19 Thread Stephan Wahlbrink
Hi Michael, Michael Bach wrote [2013-06-18 15:18]: This is a feature request for automatic activation of content assist after a certain delay, comparable to the Java content assist under Preferences > Java > Editor > Content Assist > Auto Activation. I searched in the menus and docs, but could

[StatET-user] Remote Console Server: Changed behaviour of RMI registry in new Java versions

2013-06-20 Thread Stephan Wahlbrink
Dear users of the remote server, please note that Oracle changed the behaviour of the RMI registry in Java 7 Update 21, Java 6 Update 45 and Java 5 Update 45 [1] (again [2]). The solution recommend by Oracle is to specify the codebase at the start of the registry. That means for the console s

Re: [StatET-user] StatET not setting memory.limits correctly

2013-06-26 Thread Stephan Wahlbrink
Hi Jonathan, Jonathan Greenberg wrote [2013-06-26 18:16]: I don't recall this being an issue previously, but if I launch R 3.0.1 x64 from within Stat-ET using Eclipse 4.2.2 on Windows: memory.limit() [1] 2047 The same R launched from the GUI: memory.limit() [1] 49139 Now, I can manually s

Re: [StatET-user] StatET not setting memory.limits correctly

2013-06-27 Thread Stephan Wahlbrink
-j On Wed, Jun 26, 2013 at 11:21 AM, Stephan Wahlbrink wrote: Hi Jonathan, Jonathan Greenberg wrote [2013-06-26 18:16]: I don't recall this being an issue previously, but if I launch R 3.0.1 x64 from within Stat-ET using Eclipse 4.2.2 on Windows: memory.limit() [1] 2047 The same R l

Re: [StatET-user] StatET not setting memory.limits correctly

2013-06-27 Thread Stephan Wahlbrink
mehow? Or is this a new "feature" in R 3.0? No change from my side. And AFAIK there was no change in R. The other values are set by the RGUI etc., but not when using only the R.dll. Regards, Stephan --j On Thu, Jun 27, 2013 at 4:28 AM, Stephan Wahlbrink wrote: Jonathan Greenb

Re: [StatET-user] Remote console with "dynamic" server address

2013-06-27 Thread Stephan Wahlbrink
Hi Jonathan, Jonathan Greenberg wrote [2013-06-27 18:50]: Stat-Et'ers: I work with R on a cluster computer via an interactive job approach (qsub -I). The specifics are not particularly important, but what is important is that the location of the remote R server changes each login (a different

Re: [StatET-user] Emacs+ Keyboard Scheme in StatET Console

2013-07-03 Thread Stephan Wahlbrink
Hi Michael, Michael Bach wrote [2013-07-03 13:46]: Dear StatET Users, I am asking this here in case anyone was as desperate as I was to get Emacs keybindings into Eclipse . Ignore otherwise. I tried the emacs+ keyboard scheme [1]. After reading a discussion on their ML [2], I installed a beta

Re: [StatET-user] auto-complete in editor

2013-07-10 Thread Stephan Wahlbrink
Hi Christian, Christian Oswald wrote [2013-07-10 17:26]: Hello dear other users, I have a question for the using of the auto-completion. It works fine in the console and complete any object. With an data.frame I get after the insert the $ sign a list of all fields. But in the editor this don't

Re: [StatET-user] Emacs+ Keyboard Scheme in StatET Console

2013-07-15 Thread Stephan Wahlbrink
Hi Michael, Michael Bach wrote [2013-07-12 19:05]: On 7/3/13 9:09 PM, Stephan Wahlbrink wrote: Hi Michael, Michael Bach wrote [2013-07-03 13:46]: Dear StatET Users, I am asking this here in case anyone was as desperate as I was to get Emacs keybindings into Eclipse . Ignore otherwise. I

Re: [StatET-user] Cannot set breakpoints

2013-08-05 Thread Stephan Wahlbrink
Hi Brandon, brandon willard wrote [2013-08-05 23:33]: Hello, I'm not able to set a breakpoint; all possibilities are greyed-out, e.g. right clicking the line number margin, from the Run menu, and Shift+Ctrl+B. Did you try that with an R file in an R project in the Eclipse workspace and the R

Re: [StatET-user] Statet Graphic device

2013-09-07 Thread Stephan Wahlbrink
Hi Benno, Benno Thoma wrote [2013-08-30 11:33]: Hello, is it possible to open a new page in the implemented graphic device directly from a R-script. What I want to do: Open more than one page in the R-Script in the implemented graphic device. You are looking for 'dev.new'? The function opens

Re: [StatET-user] Anyone using Eclipse 3.8 with StatET 3.0 and remote R server?

2013-09-07 Thread Stephan Wahlbrink
11:28 AM, Stephan Wahlbrink mailto:stephan.wahlbr...@walware.de>> wrote: Hi, the bug is fixed in the SSH library "JSch". The fixed version is not yet included in the Eclipse release, but you can install the update for example like StatET from our update-site (in the

Re: [StatET-user] R code snippets in Eclipse 4.3

2013-09-25 Thread Stephan Wahlbrink
Hi Emilio, Emilio López wrote [2013-09-25 08:52]: Hi all, I used to use a code snippet in Eclipse 4.2 to change the R working directory to the selected folder in the explorer, but it seems not to work in Eclipse 4.3. Is there a bug or am I doing something wrong?. yes, unfortunately the R snip

Re: [StatET-user] ctrl+R ctrl+R [or V] not working anymore

2013-09-27 Thread Stephan Wahlbrink
Hi Niklaus, Niklaus Kuehnis wrote [2013-09-27 11:24]: Hi, I am running R 3.0.1, Eclipse 4.3.0.v20130605-2000, StatET 3.3.0.b201306021645E42sw with rj 1.1.0-4 on Ubuntu 12.04 (Unity). In earlier versions of StatET, typing ctrl+R twice in the script window executed the command at cursor position

Re: [StatET-user] 'Show NIConsole' has encountered a problem

2013-10-09 Thread Stephan Wahlbrink
Hi Carlos, Carlos Soares wrote [2013-10-09 15:47]: Hi, When I run the R console I get the error: "'Show NIConsole' has encountered a problem. An internal error has occurred." I'm running: StatET 3.3.1 Eclipse 4.3.1 Mac OS X: 10.7.5 Any suggestions? Did you already check the Eclipse error l

Re: [StatET-user] 'Show NIConsole' has encountered a problem

2013-10-09 Thread Stephan Wahlbrink
java:591) at org.eclipse.equinox.launcher.Main.run(Main.java:1450) On 09/10/2013, at 18:05, Stephan Wahlbrink wrote: Hi Carlos, Carlos Soares wrote [2013-10-09 15:47]: Hi, When I run the R console I get the error: "'Show NIConsole' has encountered a problem. An interna

Re: [StatET-user] Features available in Bio7 (Eclipse RCP)

2013-10-17 Thread Stephan Wahlbrink
Hi, Bacou, Melanie wrote [2013-10-18 00:19]: Hi Stephan, I just recently started using Bio7 http://bio7.org/ developed by Marcel Austenfeld. I don't do any ecological modeling, but as a heavy R (and StatET) user, I am really impressed with some of Bio7 R-specific features like: - in-cell table

Re: [StatET-user] Fwd: Eclipse crash while indexing R environment

2013-10-28 Thread Stephan Wahlbrink
Hi Michael, Michael Rowe wrote [2013-10-27 22:54]: Reposted without attachment. -- Forwarded message -- From: *Michael Rowe* mailto:mwr...@gmail.com>> Date: Sun, Oct 27, 2013 at 2:52 PM Subject: Eclipse crash while indexing R environment To: statet-user mailto:statet-user@lists.

Re: [StatET-user] Switching from SVN/R-Forge to git/github

2013-10-28 Thread Stephan Wahlbrink
Hi Michael, Michael Friendly wrote [2013-10-27 16:15]: On 10/27/2013 4:28 AM, Erdal Karaca wrote: There are command line tools to convert svn to git: https://help.github.com/articles/importing-from-subversion AFAIK, EGit has no such functionality. OK, once I install Egit, and use something lik

Re: [StatET-user] Fwd: Eclipse crash while indexing R environment

2013-10-28 Thread Stephan Wahlbrink
[2013-10-28 18:03]: Hi Stephan, Here is the latest log file. Please do share any ideas you might have. Thanks very much! Mike On Mon, Oct 28, 2013 at 1:42 AM, Stephan Wahlbrink mailto:stephan.wahlbr...@walware.de>> wrote: Hi Michael, Michael Rowe wrote [2013-10-27

Re: [StatET-user] statet R Rj console crashes when loading tcltk on osX Maverick / Kepler / R-3.0.2

2013-11-22 Thread Stephan Wahlbrink
Hi Karl, did it work in the past? StatET/RJ is usually not involved when loading packages, but if I can do something for tcltk, please let me know. Regards, Stephan Am 21.11.2013 18:14, schrieb Karl Forner - Quartz Bio: Hello, In StatET, I create a new workspace, then a new R console conf

Re: [StatET-user] Is it possible to debug a function?

2013-11-30 Thread Stephan Wahlbrink
Hi Amir, [2013-11-30 10:37] Amir H. Jadidinejad wrote: Hi, I’m a beginner in R but before that I was a java developer for 6 years. In java, it’s possible to leverage *breakpoints* and debug a function step by step while viewing the value of variables. How to debug R programs?! You find a sh

Re: [StatET-user] java quit unexpectedly while opening a Quartz graphical device

2013-12-02 Thread Stephan Wahlbrink
Hi Francesco, [2013-12-02 09:24] Francesco Novelli wrote: Hallo everybody, I'm doing an econometric analysis with R and I've written a script which automatically opens multiple graphical devices I need to visually inspect. The script worked fine on my previous Windows machine but I'm having pro

Re: [StatET-user] java quit unexpectedly while opening a Quartz graphical device

2013-12-03 Thread Stephan Wahlbrink
is, that your scripts work in any environment, it is only required that the default device is set to the desired device. Regards, Stephan And I'm not trying to load any Java class myself, it's one of the alternative errors I get when R crashes while attempting to plot. Thanks,

Re: [StatET-user] Path to rj package not found.

2013-12-06 Thread Stephan Wahlbrink
Hi Benjamin, [2013-12-06 00:15] Benjamin Eltzner wrote: -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Dear StatET list, I have the problem that rj is not found and thus StatET does not work. I know this has been discussed earlier on this list, but unfortunately the solution described then doe

Re: [StatET-user] StatET Code Snippets

2014-01-19 Thread Stephan Wahlbrink
Hi Don, [2014-01-18 03:38] Don Brady wrote: Hi, I would like to be able to use a code-snippet to invoke View on an element name in the Object Browser. However, code-snippets do not seem to work at all in the Object Browser. Even Print Head, Print Tail, and Print Summary do not have any ef

Re: [StatET-user] roxygen editing

2014-01-21 Thread Stephan Wahlbrink
Hi Brandon, [2014-01-10 18:56] brandon willard wrote: Hello, I was just adding roxygen text in StatET when I noticed that hitting enter doesn't add a comment token (i.e. #') to the new line. Is there an option I'm missing? It would be great if it behaved like Java /**/ comments. StatET adds

Re: [StatET-user] Code Completion is Not always working

2014-03-18 Thread Stephan Wahlbrink
Hi Koushik, [2014-03-18 06:30] Koushik Saha wrote: Dear all I just have configured my Eclipse with StatET Plugin. But i noticed that the the Code completion is not working in the Default RJ term always. sometime i need to restart the IDE in order to make it work again. i.e. pressing ctl+Space i

[StatET-user] [Ann] Maintenance update StatET 3.3.2 testing

2014-03-18 Thread Stephan Wahlbrink
Dear StatET users, the testing version of the maintenance update StatET 3.3.2 is available for download. The update should fix most reported bugs, e.g. - R snippets wasn't executed via menu in new Eclipse versions - Elements in the outline of the R editor was missing if name occurs several

Re: [StatET-user] Status of Stat-ET for R 3.1.0?

2014-04-11 Thread Stephan Wahlbrink
Hi, [2014-04-11 17:08] Jonathan Greenberg wrote: Folks: I wanted to see how close you guys were to releasing StatET that works with R 3.1.0? Is there a testing version available? I did manage to get rj 2.0 installed via: install.packages(c("rj", "rj.gd"), repos="http://download.walware.de/rj

Re: [StatET-user] R code Snippets

2014-06-16 Thread Stephan Wahlbrink
Hi, [2014-06-16 09:32] mh fe wrote: Dear All, First I want to thank Stephan for the StatET plug-in. I can only have 8 R Snippets in the Object Browser and the rest of R code Snippets that were set in preference were ignored. Is this a bug or I miss something? There is no limit

Re: [StatET-user] Error using STATeT in Eclipse (problems with run button)

2014-07-10 Thread Stephan Wahlbrink
Hi Charles, this should, of course, not happen. But for an analysis of your problems, the log files of Eclipse and probably also of the R console are required (see also here: http://www.walware.de/?page=/it/statet/troubleshooting.html). Regards, Stephan [2014-07-10 11:45] Charles Bournhones

Re: [StatET-user] Error using STATeT in Eclipse (problems with run button)

2014-07-11 Thread Stephan Wahlbrink
Hi, if somebody has the same problem: it is fixed by an update of the R package 'rj' (version >= 2.0.2). Thank you, Charles, for the bug report and information. Regards, Stephan [2014-07-10 17:44] Stephan Wahlbrink wrote: Hi Charles, this should, of course, not happe

Re: [StatET-user] Remote console start failure: missing DbgListener?

2014-07-12 Thread Stephan Wahlbrink
Hi James, [2014-07-12 00:14] James Diggans wrote: I’m trying to start a remote console and after starting the rmiregistry and running the startup script I get the stacktrace below in the session log file – it would seem to be calling a class that is not present in the current (v01.01.04) server.

Re: [StatET-user] new eclipse/StatET installation: OK to go with Kepler (Eclipse Standard 4.3.2)?

2014-08-01 Thread Stephan Wahlbrink
Hi Michael, [2014-07-31 23:49] Michael Friendly wrote: I'm setting up a new Win 7 64-bit machine, with eclipse/StatET for all my R package development work. Two quick questions: - My last install was eclipse 3.8 on a laptop, where everything worked fine with StatET / svn / R-Forge. Is the cur

Re: [StatET-user] Dark theme - color of command prompt

2014-08-04 Thread Stephan Wahlbrink
Hi Lorenzo, [2014-08-04 09:16] Lorenzo Busetto wrote: Dear all, I'm using Statet on Eclipse 4.4, and trying to use the new "Dark" eclipse theme. I was wondering if it is possible to change somehow the the "light blue" background color used to highlight the "command prompt" (i.e., ">" sy

Re: [StatET-user] Questions on Object Borwser and "variables view"

2014-08-05 Thread Stephan Wahlbrink
Hi Lorenzo, The "Object Browser" shows the list of attached packages and R objects comparable to the R function "search". The "Variables" view shows the frames of the call stack comparable to the R function "sys.frames". If an R object is shown as "promise" element, it is a promise object not

Re: [StatET-user] (no subject)

2014-08-07 Thread Stephan Wahlbrink
e. But in my case the error remains even after having installed this package: packageDescription("rj") Encoding: UTF-8 Package: rj Version: 0.5.0-5 Version 0.5 != 1.1 ! Downloads for RJ 1.1: http://www.walware.de/?page=/it/downloads/rj.01.01.html Regards, Stephan Date: 2010-05-01

Re: [StatET-user] (no subject)

2014-08-07 Thread Stephan Wahlbrink
ges’ Warning messages: 1: In install.packages(c("rj", "rj.gd"), repos = "http://download.walware.de/rj-1.1";) : installation of package ‘rj’ had non-zero exit status 2: In install.packages(c("rj", "rj.gd"), repos = "http://download.walware

Re: [StatET-user] (no subject)

2014-08-08 Thread Stephan Wahlbrink
Hi Luís, did you also install r-base-dev? It seems it fails to set the JNI cpp flags in your configuration. Please find below the terminal output of the installation process as it usually works (Ubuntu 14.04/Trusty Tahr). Best, Stephan root@vm-ubuntu-tt:/home/user# java -version java v

Re: [StatET-user] help doesn't work

2014-10-14 Thread Stephan Wahlbrink
Hi Elske, [2014-10-14 10:13] Elske van der Vaart wrote: Hello StatET Users, I’ve gotten StatET to work with Eclipse and I’m loving it. The only thing that doesn’t seem to work is help - for example, both help(paste) and ?paste bring up the /R/ help window, but it claims: Help on topic |paste|

Re: [StatET-user] help doesn't work

2014-10-14 Thread Stephan Wahlbrink
p. Thanks! Regards, Elske. On 14 Oct 2014, at 10:20, Stephan Wahlbrink mailto:stephan.wahlbr...@walware.de>> wrote: Hi Elske, [2014-10-14 10:13] Elske van der Vaart wrote: Hello StatET Users, I’ve gotten StatET to work with Eclipse and I’m loving it. The only thing that doesn’t seem to

Re: [StatET-user] help doesn't work

2014-10-14 Thread Stephan Wahlbrink
orking, but the list of Packages is empty. R_Home’s currently set to /Library/Frameworks/R.framework/Resources, and the installation location for Documentation is pointing to ${env_var:R_HOME}/doc. I’ve tried completely re-Indexing the R Environment and that works fine but doesn

Re: [StatET-user] Data Viewer in debug mode

2014-10-27 Thread Stephan Wahlbrink
Hi, [2014-10-18 00:18] Huigang Chen wrote: Hi guys, I just installed StatET in eclipse and found that it is so much better than Rstudio especially in code browsing. However one important feature that I cannot figure out how to make it work is that I cannot open a data frame inside a function in

Re: [StatET-user] active bindings and reference classes

2014-10-28 Thread Stephan Wahlbrink
Hi, [2014-10-18 22:37] Mike Ems wrote: Dear list, I notice that activeBindings automatically execute in StatET, regardless of whether the value of 'sym' in makeActiveBinding(sym, fun, env) was requested. This can be a problem when working with, eg, the new R6class. A simple way to demonstrate

Re: [StatET-user] Using remote console on localhost without ssh

2014-11-04 Thread Stephan Wahlbrink
Hi Karl, [2014-11-04 14:29] Karl Forner - Quartz Bio wrote: Hello, My question may sound dumb, so a word about what I'm trying to accomplish: I want to run a console connecting to a R interpreter running inside a docker container. I tried doing with a remote console. Setup: - in the docker

Re: [StatET-user] StatET Concole Background Color

2014-11-10 Thread Stephan Wahlbrink
Hi Alex, StatET 3.4 (IIRC not yet 3.3) uses the background color of text editors also in the console (for input and output). The background color of text editors is configurable in the preference page: General > Editors > Text Editors Regards, Stephan [2014-11-08 17:41] Alex wrote: Hello

Re: [StatET-user] remote console and help browser

2014-11-11 Thread Stephan Wahlbrink
Hi Karl, [2014-11-11 14:47] Karl Forner - Quartz Bio wrote: Hello, Apparently there is no help window or browser working when using a remote console. The help works as usual if you create and assign a (remote) R environment in StatET. 1) Is that true or is it due to my settings ? 2) if n

Re: [StatET-user] remote console and help browser

2014-11-11 Thread Stephan Wahlbrink
Hi, [2014-11-11 18:48] Karl Forner - Quartz Bio wrote: > The help works as usual if you create and assign a (remote) R environment in StatET. Right, I completely missed that (remote) R environment stuff. So I defined one, understood that you should define and store your doc indices locally, a

Re: [StatET-user] "Tasks" in StatET (vs "Tasks" in C)

2014-12-07 Thread Stephan Wahlbrink
Hi Alex, [2014-11-25 05:36] Alex wrote: Hello Stephan and everyone! Based on my experience with C, when Eclipse detects such a tag as "XXX," or "TODO," or "FIXME" in comments to the code, it automatically adds a task to the Tasks pane. In StatET, this feature is not automatic (at least in my c

Re: [StatET-user] org.Hs.eg.db crashes StatET

2014-12-22 Thread Stephan Wahlbrink
All binaries of rj_2.0.3-1 are available now too. Regards, Stephan Karl Forner - Quartz Bio schrieb am 2014-12-19 um 11:38: Thank you very much once again Tobias. It does fix this problem ! Could be nice to update the "http://download.walware.de/rj-2.0"; with the new version ? Best, Karl On

Re: [StatET-user] setting environment to pick up data files in project dir

2015-01-06 Thread Stephan Wahlbrink
Hi Simon, [2015-01-06 18:37] Brown, Simon wrote: Hello list. I have just started using eclipse+StatET today in a linux environment. Installation and setup has gone fairly smoothly, with most of the challenge coming from getting my head round eclipse. One problem I have not been able to find

Re: [StatET-user] StatET unable to find rj on Ubuntu (now with R 3.1.2)

2015-01-14 Thread Stephan Wahlbrink
" line to /usr/bin/R . successfully ran "R CMD javareconf" . successfully installed rj 2.0 from the R console: packageDescription("rj") Encoding: UTF-8 Package: rj Version: 2.0.3-1 Title: RJ - R Package for high-level Java-R library RJ Author: Stephan Wahlbrink, Tobias Verbe

Re: [StatET-user] Help Does not work in console

2015-01-21 Thread Stephan Wahlbrink
Hi Aanjaneya, Elske reported a similar problem some time ago: http://thread.gmane.org/gmane.comp.ide.eclipse.statet/189 But it probably doesn't help. I don't know why it doesn't work in your setup, but we can try to isolate the problem: I guess the problem occurs with all topics, not only "rea

Re: [StatET-user] Communication error detail. Send:

2015-02-02 Thread Stephan Wahlbrink
Hi Ralph, you have to provide a bit more information, see also: http://www.walware.de/?page=/it/statet/troubleshooting.html&jump=bugreport Can you provide a reproducible example? Regards, Stephan [2015-02-02 19:13] Ralph Fehrer wrote: I am using rJava to call java code from a StatET R-con

Re: [StatET-user] Compilation error rj - rj.gd: cannot find -lpcre, -lbz2

2015-02-20 Thread Stephan Wahlbrink
Hi Christian, [2015-02-20 13:57] Christian Oswald wrote: Hello, by the installation of the rj,rj.gd package I get a compilation error. - [...] -

Re: [StatET-user] Communication errors with statet server

2015-03-03 Thread Stephan Wahlbrink
Hi Moritz, which version of R do you use? Can you provide steps (R session input) to reproduce the issue? Regards, Stephan [2015-03-03 15:54] Moritz Gerstung wrote: Hello After upgrading to eclipse 4.4.2 and Statet 3.4.1 on OS X I started having troubles to use the Statet server on a remote

Re: [StatET-user] Communication errors with statet server

2015-03-04 Thread Stephan Wahlbrink
problem. Maybe you reproduce the problem with a single object of your generated result and you can share such an object (saved R data)? Regards, Stephan Regards, Moritz On 3 Mar 2015, at 19:34, Stephan Wahlbrink wrote: Hi Moritz, which version of R do you use? Can you provide steps (R session

Re: [StatET-user] Automated function parameter insert with Content Assist

2015-05-02 Thread Stephan Wahlbrink
Hi Cron, sorry, this is not possible at the moment. (After the insertion of the function name, the parameters are shown in the small info box and you can insert a single parameter name by invoking the content assist again.) Why you want to do that, code convention? Regards, Stephan [2015-

Re: [StatET-user] statet can not find cygwin R

2015-05-07 Thread Stephan Wahlbrink
Hi Foehn, [2015-04-26 13:14] foehn wrote: Dear StatET users, Previously I used R (v3.1.2) for Windows (binary package from R-project) and StatET (v3.4.1) for Eclipse (v4.4.0), they worked without issue. But when I changed to the cygwin version (v2.870) of R (v3.1.3, installed directly from pre-

Re: [StatET-user] [StatET - Sweave] How to change the path of output file?

2015-06-09 Thread Stephan Wahlbrink
Hi Chris, how did you specify the output directory (expression)? The path have to be somewhere in the workspace. You can also try out the latest testing version (3.4.2 build today), it provides more detail for that error in some situations. Regards, Stephan [2015-06-09 10:45] christoper v

Re: [StatET-user] [StatET - Sweave] How to change the path of output file?

2015-06-15 Thread Stephan Wahlbrink
you. Kind regards, Christober From: Stephan Wahlbrink Sent: Tue, 09 Jun 2015 16:47:11 To: christoper vinoth raj , "statet-user@lists.r-forge.r-project.org" Subject: Re: [StatET-user] [StatET - Sweave] How to change the path of output file? Hi Chris, how did you specify the out

Re: [StatET-user] eclipse doesn't show StatET perspective

2015-07-21 Thread Stephan Wahlbrink
Hi Michael, [2015-07-21 23:37] Michael Friendly wrote: [Env: Win 7] I had problems with a prior installation of Eclipse 4.3 (Kepler) and decided to reinstall from scratch. I downloaded and unziped eclipse-standard-kepler-SR2-win32-x86_64.zip, ran eclipse.exe, and from Help -> Install new softw

Re: [StatET-user] Ctrl+Alt+Up/Down don't work in RJ console

2015-07-29 Thread Stephan Wahlbrink
Hi Slava, [2015-07-29 15:57] Slava Mazur wrote: Greetings, When running R in command line environment I extensively use `reverse-i-search’ feature to quick search a commands’ history. This feature is enabled by Ctrl+R in command line. I was told that the same is available via Ctrl+Alt+Up/Down

Re: [StatET-user] No statET perspective despite installation.

2015-08-13 Thread Stephan Wahlbrink
Hi Nikhil, did you already check the Java version used to run Eclipse? You can check it in the Installation Details (Configuration, 'java.version') in Eclipse too. StatET 3.4 requires Java 7 (1.7). Regards, Stephan nikhil vashisth schrieb am 2015-08-13 um 14:59: Hey! I'm new to Eclipse, s

Re: [StatET-user] Keyboard shortcut for Next/Prev R Graphics page

2015-10-12 Thread Stephan Wahlbrink
Hi Triq, [2015-08-19 22:22] Col Triq wrote: When multiple R Graphics pages are open, is there a keyboard shortcut for next/previous graphics page view? Alt-F7 kind of does what I want, but it creates a drop down of all open R Graphics pages, with the top item selected, and I have to scroll dow

Re: [StatET-user] problems with R-help

2015-10-18 Thread Stephan Wahlbrink
Hi Jack, thank you for the feedback! Regards, Stephan [2015-10-18 17:34] Jike Cui wrote: I found the problem. In Mac, the default R_HOME is */Library/Frameworks/R.framework/Resources* *However, seems it's just a softlink. After I changed it to */Library/Frameworks/R.framework/Versions/3.2/R

Re: [StatET-user] error when using debug mode

2015-11-03 Thread Stephan Wahlbrink
Hi Wei, the debug mode is only available for the launch type RJ (first setting in the launch configuration). Regards, Stephan [2015-11-02 19:16] Leo Liu wrote: Hi, I am new to StatET in eclipse. I installed Eclipse Standard/SDK version Luna, R x64 3.2.1 and StatET 4.3. It works fine on my

Re: [StatET-user] Statet install : jvm.dll missing

2015-12-11 Thread Stephan Wahlbrink
Hi David, The R packages rj and rj.gd are designed for RJ, that means they doesn't work in other contexts like RTerm or RGui. Did you start the R console in StatET in the default launch type "RJ" (first setting in the launch configuration)? But the console doesn't start at all? What is the

Re: [StatET-user] 'Open Type' or 'Open Resource' equivalent in StatET

2016-02-15 Thread Stephan Wahlbrink
Hi Marek, [2016-02-14 13:50] Marek Jagielski wrote: Hi, I am developing tool for data-flow processing: https://www.youtube.com/channel/UCvfS-lPXeKjMoFAhKIzyf7A (my google channel). I plan to add now a support for R. I already add support for Java (http://systemincloud.com/tasks/#0.8.0/commons/

Re: [StatET-user] AST equivalent in StatET

2016-02-27 Thread Stephan Wahlbrink
Hi Marek, I think for such analysis you have to switch to the AST: IAstNode node= (IAstNode.class) el.getAdapter(IAstNode.class); if (node instanceof Assignment) { RAstNode sourceNode= ((Assignment) node).getSourceChild(); if (sourceNode instanceof FCall) { FCall.

Re: [StatET-user] Rengine won't start-- StatET finds rj library but claims otherwise

2016-03-06 Thread Stephan Wahlbrink
Hi Mark, [2016-03-06 06:19] mark.braving...@csiro.au wrote: Hi there I am trying to run Eclipse / StatET / R but am told that "Launching the R Console was cancelled, because it seems starting the R engine failed.". Google etc reveal lots of similar questions, but my error messages seem subtly d

Re: [StatET-user] [RJ library] Examples?

2016-03-11 Thread Stephan Wahlbrink
Hi Marek, [2016-03-10 23:58] Marek Jagielski wrote: Hi, Are there any examples available showing how the RJ library can br used? How to establish communication between Java and R? the RServi RCP Demo is a smaller example how the RJ library can be used: https://github.com/walware/rj-servi/tre

Re: [StatET-user] Build statet from source

2016-03-15 Thread Stephan Wahlbrink
Hi Tal, [2016-03-15 18:55] Tal Hayon wrote: Hi, I'd really appreciate an explanation of how to build statet from source. I couldn't find one either on the site or in the mailing lsit. I've tried getting all the projects from github but I'm having trouble understanding what to run with maven an

Re: [StatET-user] [RServi] Way to redirect streams to System.out and System.in

2016-04-23 Thread Stephan Wahlbrink
Hi Marek, the output is printed to stdout if you start the RServi node in debug mode. The debug mode is enabled by setting the Java property 'de.walware.rj.debug'. Regards, Stephan [2016-04-23 14:56] Marek Jagielski wrote: Hi, My way of using RServi is as in https://github.com/marekjagiel

Re: [StatET-user] [RServi] Way to redirect streams to System.out and System.in

2016-04-29 Thread Stephan Wahlbrink
Hi Marek, maybe the current RServi doesn't offer at Java level what you are looking for. You can also use R function capture.output to collect the output of your functions. If you want a full console, simply use StatET. Regards, Stephan ___ StatET

Re: [StatET-user] knitr + pandoc preset: In spec of output file, The variable 'file_name_base' references to non-existing workspace resource 'null'.

2016-05-18 Thread Stephan Wahlbrink
Hi Karl, this is a bug, the variable resolver checks if the md file exists (which is, of course, not required). Possible workarounds: a) Replace ${file_name_base} by ${file_name_base:${source_file_path}} b) Create an empty md file c) Use a "single-step" config It should be fixed in the

Re: [StatET-user] How to debug broken graphics in StatET?

2016-05-18 Thread Stephan Wahlbrink
Hi Denys, did you use the integrated graphic device (rj.gd)? You can debug the rendering [1] of the integrated device like any other Eclipse application from an Eclipse IDE itself. I can reproduce the issue of non-printed micro points, it will be fixed in the next version. Regards, Stephan

Re: [StatET-user] Code snippets menu option disappeared

2016-05-20 Thread Stephan Wahlbrink
Hi Melanie, sorry, this is a bug. It will be fixed in the next version. As workaround you can use the button in the main toolbar. Regards, Stephan [2016-05-20 23:01] Bacou, Melanie wrote: Hi, I just updated StatET to 3.5.1 in Eclipse Mars (version 4.5.2), but I'm stuck because I can no longe

Re: [StatET-user] RServi - callback?

2016-05-22 Thread Stephan Wahlbrink
Hi Marek, [2016-05-23 01:13] Marek Jagielski wrote: I see that in DataCmdItem constructor 'Constructor for operations without returned data:' of the version rj.server-2.0.4 targetExpr is not used at all: I think the issue is already fixed. The current version is 2.0.5. Regards, Stephan /*

Re: [StatET-user] RServi - callback?

2016-05-22 Thread Stephan Wahlbrink
Hi Marek, [2016-05-22 22:30] Marek Jagielski wrote: Hi, On execution of line: this.fRservi.assignData("instance$" + ipName + "$data", rdata, null); I get exception: org.eclipse.core.runtime.CoreException: Assignment failed: The assignment for R objects of type REnvironment is not yet supported

Re: [StatET-user] RServi - callback?

2016-05-24 Thread Stephan Wahlbrink
de.walware.rj.servi.internal.RServiImpl.assignData(RServiImpl.java:249) at com.systemincloud.modeler.tasks.rtask.impl.RTaskI.(RTaskI.java:104) I verified that in this plugin jar there are your changes due to commit 'Fixed assignment of RObjects'. Marek 2016-05-23 8:18 GMT+02:00 Stephan Wahlbrink : Hi Marek, [2016-05-23 01

Re: [StatET-user] RServi - callback?

2016-05-25 Thread Stephan Wahlbrink
Hi Marek, [2016-05-25 23:33] Marek Jagielski wrote: Hi Stephan, [...] First is evalVoid that is from execute method. I imagine that the reason is the second listed exception that is from execution of: RObject dims = fRservi.evalData(sdims.toString(), null); What is interesting that further i

Re: [StatET-user] RJ package doesnt work with R 3.3

2016-05-31 Thread Stephan Wahlbrink
Hi Nirav, what was the problem? Regards, Stephan [2016-05-31 23:22] Nirav Patel wrote: This particular instruction from following doc doesn't work if you have R 3.3 installed http://www.walware.de/?page=/it/rj/index.mframe For RJ 2.0 (StatET 3.4 - 3.5): install.packages(c("rj", "rj.gd"),

Re: [StatET-user] RJ package doesnt work with R 3.3

2016-06-02 Thread Stephan Wahlbrink
d as well with following: configure: error: ./configure failed for jri ERROR: configuration failed for package ‘rj’ * removing ‘/Library/Frameworks/R.framework/Versions/3.3/Resources/library/rj’ * restoring previous ‘/Library/Frameworks/R.framework/Versions/3.3/Resources/library/rj’ On Tue, Ma

Re: [StatET-user] new project => could not initialize class org.eclipse.jgit.util.FS

2016-06-30 Thread Stephan Wahlbrink
Hi, I saw you already found the more suitable community (Eclipse EGit). For helpful answers I can only recommend that you provide more information like Eclipse version/edition, Java version and the complete stacktrace. Regards, Stephan [2016-06-30 10:52] lejeczek wrote: hi users, I'm try

Re: [StatET-user] plot console doesn't work any more after upgrade to java 1.8

2016-07-14 Thread Stephan Wahlbrink
Hi Dietmar, [2016-07-14 09:48] Dietmar wrote: hello, after update of my Centos 7.1 linux to java 1.8 the plot console inside Eclipse does not work anymore. I get the following error: Error in (function (name = "rj.gd", width = 7, height = 7, size.unit = "in", : Graphics API version mismatch

Re: [StatET-user] Eclipse Neon constantly freezing

2016-08-18 Thread Stephan Wahlbrink
Hi Luís, did you try out the suggestion of Mickael: Maybe installing the libwebkit-gtk3 package can help. > However if walware forces usage of Mozilla browser on GTK3, ... We don't force a special browser type. Which Linux distribution do you use? Regards, Stephan [2016-08-18 09:28] Luí­

Re: [StatET-user] Eclipse Neon constantly freezing

2016-08-18 Thread Stephan Wahlbrink
Hi Luís, [2016-08-18 20:49] Luí­s de Sousa wrote: Hello again, I could not find the libwebkit-gtk3 package in any official repository, I think the names of the Ubuntu package names are listed in the bug you referred to in your previous mail. Regards, Stephan but I installed something ap

Re: [StatET-user] Changing Font size in Data Viewer

2016-08-21 Thread Stephan Wahlbrink
Hi Don, [2016-08-21 06:43] Don Brady wrote: By the way I tried Eclipse Neon (probably not yet officially supported by StatET but there is a repository for it) with its new Zoom-in capability. Happily, zoom works fine for the code editor. It does not appear to work for the data viewer. Yes, t

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