Getting "error: db5-error(5) from dbenv->open - In/Out-error"
On Wed, 14 Jun 2017, Jon Ingason wrote: > I just installed Fedora 26 Beta 1.4 Gnome Workstation from > Fedora-Server-netinst-x86_64-26_Beta-1.4.iso. Then I did "sudo dnf > update" in terminal window: > > $ sudo dnf update --refresh > Fedora 26 - x86_64 - Test Updates 5.4 MB/s | 23 MB > 00:04 > Senaste kontroll av utgång av metadata: för 0:00:00 sedan den ons 14 jun > 2017 19 > :16:47. > Beroenden upplösta. Tt has long been known that using potentially 'stale' cursor handles, under a scripting language such as Python, which, as we look at the transaction, is modifying the BDB backing store 'underneath itself'. This will result in corruption such as this. An ancient version of 'yum' back in the Seth K Vidal days ran into this as well. This is nothing new, or unknowable as to its source It is not RPM, it is not BDB -- it is incautious coders trying to change the tires on a moving vehicle without adequate precautions, and being surprised when 'bad stuff' TM happens -- Russ herrold ___ test mailing list -- test@lists.fedoraproject.org To unsubscribe send an email to test-le...@lists.fedoraproject.org
Re: Getting "error: db5-error(5) from dbenv->open - In/Out-error"
Den 2017-06-14 kl. 19:55, skrev Adam Williamson: > On Wed, 2017-06-14 at 19:46 +0200, Jon Ingason wrote: >> I just installed Fedora 26 Beta 1.4 Gnome Workstation from >> Fedora-Server-netinst-x86_64-26_Beta-1.4.iso. Then I did "sudo dnf >> update" in terminal window: >> >> $ sudo dnf update --refresh >> Fedora 26 - x86_64 - Test Updates 5.4 MB/s | 23 MB >> 00:04 >> Senaste kontroll av utgång av metadata: för 0:00:00 sedan den ons 14 jun >> 2017 19 >> :16:47. >> Beroenden upplösta. >> >> PaketArkitektur VersionFörråd >> Storlk >> >> Uppgraderar: >> libdbx86_64 5.3.28-22.fc26 updates-testing >> 749 k >> libdb-utils x86_64 5.3.28-22.fc26 updates-testing >> 137 k >> >> Transaktionssammanfattning >> >> Uppgradera 2 Paket >> >> Total storlek att hämta: 887 k >> Är detta ok [j/N]: j >> Hämtar paket: >> (1/2): libdb-utils-5.3.28-22.fc26.x86_64.rpm1.7 MB/s | 137 kB >> 00:00 >> (2/2): libdb-5.3.28-22.fc26.x86_64.rpm 4.0 MB/s | 749 kB >> 00:00 >> >> Totalt 691 kB/s | 887 kB 00:01 >> varning: >> /var/cache/dnf/updates-testing-b081e891bd0bf8fd/packages/libdb-5.3.28-2 >> 2.fc26.x86_64.rpm: Huvud V3 RSA/SHA256 Signature, nyckel-ID 64dab85d: NOKEY >> Importing GPG key 0x64DAB85D: >> Userid : "Fedora 26 Primary (26)" >> Fingerprint: E641 850B 77DF 4353 78D1 D7E2 812A 6B4B 64DA B85D >> From : /etc/pki/rpm-gpg/RPM-GPG-KEY-fedora-26-x86_64 >> Är detta ok [j/N]: j >> Nyckelimport lyckades >> Kör transaktionskontroll >> Transaktionskontrollen lyckades. >> Kör transaktionstest >> Transaktionstesten lyckades. >> Kör transaktionen >> Förbereder : >>1/1 >> Uppgraderar : libdb-5.3.28-22.fc26.x86_64 >>1/4 >> Kör skript : libdb-5.3.28-22.fc26.x86_64 >>1/4 >> Uppgraderar : libdb-utils-5.3.28-22.fc26.x86_64 >>2/4 >> Rensar upp : libdb-utils-5.3.28-21.fc26.x86_64 >>3/4 >> Rensar upp : libdb-5.3.28-21.fc26.x86_64 >>4/4 >> Kör skript : libdb-5.3.28-21.fc26.x86_64 >>4/4 >> Verifierar : libdb-5.3.28-22.fc26.x86_64 >>1/4 >> Verifierar : libdb-utils-5.3.28-22.fc26.x86_64 >>2/4 >> Verifierar : libdb-5.3.28-21.fc26.x86_64 >>3/4 >> Verifierar : libdb-utils-5.3.28-21.fc26.x86_64 >>4/4 >> >> Uppgraderade: >> libdb.x86_64 5.3.28-22.fc26 libdb-utils.x86_64 5.3.28-22.fc26 >> >> >> Klart! >> $ sudo dnf install gnome-tweak-tool >> fel: db5-fel(5) från dbenv->open: In/ut-fel >> fel: kan inte öppna Packages-indexet med db5 - In/ut-fel (5) >> fel: kan inte öppna paketdatabas i /var/lib/rpm >> Fel: Error: rpmdb open failed >> $ >> >> I guess that there is something wrong with libdb-5.3.28-21.fc26.x86_64 >> or libdb-utils.x86_64 5.3.28-22.fc26 >> >> Some suggestion what to do? > > This is known. Don't worry about the error message, it's harmless. If > you get errors when trying to run dnf, yum, etc. in future, run 'rpm -- > rebuilddb' and it should fix it. > > See: > > https://fedoraproject.org/wiki/Common_F26_bugs#libdb-rebuilddb > > Sorry for the trouble. > :-) Reboot fixed the problem. I guess this is same problem which people had with the FC25 version and discussed on the userlist. -- Regards Jon Ingason ___ test mailing list -- test@lists.fedoraproject.org To unsubscribe send an email to test-le...@lists.fedoraproject.org
Re: Getting "error: db5-error(5) from dbenv->open - In/Out-error"
On Wed, 2017-06-14 at 19:46 +0200, Jon Ingason wrote: > I just installed Fedora 26 Beta 1.4 Gnome Workstation from > Fedora-Server-netinst-x86_64-26_Beta-1.4.iso. Then I did "sudo dnf > update" in terminal window: > > $ sudo dnf update --refresh > Fedora 26 - x86_64 - Test Updates 5.4 MB/s | 23 MB > 00:04 > Senaste kontroll av utgång av metadata: för 0:00:00 sedan den ons 14 jun > 2017 19 > :16:47. > Beroenden upplösta. > > PaketArkitektur VersionFörråd > Storlk > > Uppgraderar: > libdbx86_64 5.3.28-22.fc26 updates-testing > 749 k > libdb-utils x86_64 5.3.28-22.fc26 updates-testing > 137 k > > Transaktionssammanfattning > > Uppgradera 2 Paket > > Total storlek att hämta: 887 k > Är detta ok [j/N]: j > Hämtar paket: > (1/2): libdb-utils-5.3.28-22.fc26.x86_64.rpm1.7 MB/s | 137 kB > 00:00 > (2/2): libdb-5.3.28-22.fc26.x86_64.rpm 4.0 MB/s | 749 kB > 00:00 > > Totalt 691 kB/s | 887 kB 00:01 > varning: > /var/cache/dnf/updates-testing-b081e891bd0bf8fd/packages/libdb-5.3.28-2 > 2.fc26.x86_64.rpm: Huvud V3 RSA/SHA256 Signature, nyckel-ID 64dab85d: NOKEY > Importing GPG key 0x64DAB85D: > Userid : "Fedora 26 Primary (26)" > Fingerprint: E641 850B 77DF 4353 78D1 D7E2 812A 6B4B 64DA B85D > From : /etc/pki/rpm-gpg/RPM-GPG-KEY-fedora-26-x86_64 > Är detta ok [j/N]: j > Nyckelimport lyckades > Kör transaktionskontroll > Transaktionskontrollen lyckades. > Kör transaktionstest > Transaktionstesten lyckades. > Kör transaktionen > Förbereder : >1/1 > Uppgraderar : libdb-5.3.28-22.fc26.x86_64 >1/4 > Kör skript : libdb-5.3.28-22.fc26.x86_64 >1/4 > Uppgraderar : libdb-utils-5.3.28-22.fc26.x86_64 >2/4 > Rensar upp : libdb-utils-5.3.28-21.fc26.x86_64 >3/4 > Rensar upp : libdb-5.3.28-21.fc26.x86_64 >4/4 > Kör skript : libdb-5.3.28-21.fc26.x86_64 >4/4 > Verifierar : libdb-5.3.28-22.fc26.x86_64 >1/4 > Verifierar : libdb-utils-5.3.28-22.fc26.x86_64 >2/4 > Verifierar : libdb-5.3.28-21.fc26.x86_64 >3/4 > Verifierar : libdb-utils-5.3.28-21.fc26.x86_64 >4/4 > > Uppgraderade: > libdb.x86_64 5.3.28-22.fc26 libdb-utils.x86_64 5.3.28-22.fc26 > > > Klart! > $ sudo dnf install gnome-tweak-tool > fel: db5-fel(5) från dbenv->open: In/ut-fel > fel: kan inte öppna Packages-indexet med db5 - In/ut-fel (5) > fel: kan inte öppna paketdatabas i /var/lib/rpm > Fel: Error: rpmdb open failed > $ > > I guess that there is something wrong with libdb-5.3.28-21.fc26.x86_64 > or libdb-utils.x86_64 5.3.28-22.fc26 > > Some suggestion what to do? This is known. Don't worry about the error message, it's harmless. If you get errors when trying to run dnf, yum, etc. in future, run 'rpm -- rebuilddb' and it should fix it. See: https://fedoraproject.org/wiki/Common_F26_bugs#libdb-rebuilddb Sorry for the trouble. -- Adam Williamson Fedora QA Community Monkey IRC: adamw | Twitter: AdamW_Fedora | XMPP: adamw AT happyassassin . net http://www.happyassassin.net ___ test mailing list -- test@lists.fedoraproject.org To unsubscribe send an email to test-le...@lists.fedoraproject.org
Getting "error: db5-error(5) from dbenv->open - In/Out-error"
I just installed Fedora 26 Beta 1.4 Gnome Workstation from Fedora-Server-netinst-x86_64-26_Beta-1.4.iso. Then I did "sudo dnf update" in terminal window: $ sudo dnf update --refresh Fedora 26 - x86_64 - Test Updates 5.4 MB/s | 23 MB 00:04 Senaste kontroll av utgång av metadata: för 0:00:00 sedan den ons 14 jun 2017 19 :16:47. Beroenden upplösta. PaketArkitektur VersionFörråd Storlk Uppgraderar: libdbx86_64 5.3.28-22.fc26 updates-testing 749 k libdb-utils x86_64 5.3.28-22.fc26 updates-testing 137 k Transaktionssammanfattning Uppgradera 2 Paket Total storlek att hämta: 887 k Är detta ok [j/N]: j Hämtar paket: (1/2): libdb-utils-5.3.28-22.fc26.x86_64.rpm1.7 MB/s | 137 kB 00:00 (2/2): libdb-5.3.28-22.fc26.x86_64.rpm 4.0 MB/s | 749 kB 00:00 Totalt 691 kB/s | 887 kB 00:01 varning: /var/cache/dnf/updates-testing-b081e891bd0bf8fd/packages/libdb-5.3.28-2 2.fc26.x86_64.rpm: Huvud V3 RSA/SHA256 Signature, nyckel-ID 64dab85d: NOKEY Importing GPG key 0x64DAB85D: Userid : "Fedora 26 Primary (26)" Fingerprint: E641 850B 77DF 4353 78D1 D7E2 812A 6B4B 64DA B85D From : /etc/pki/rpm-gpg/RPM-GPG-KEY-fedora-26-x86_64 Är detta ok [j/N]: j Nyckelimport lyckades Kör transaktionskontroll Transaktionskontrollen lyckades. Kör transaktionstest Transaktionstesten lyckades. Kör transaktionen Förbereder : 1/1 Uppgraderar : libdb-5.3.28-22.fc26.x86_64 1/4 Kör skript : libdb-5.3.28-22.fc26.x86_64 1/4 Uppgraderar : libdb-utils-5.3.28-22.fc26.x86_64 2/4 Rensar upp : libdb-utils-5.3.28-21.fc26.x86_64 3/4 Rensar upp : libdb-5.3.28-21.fc26.x86_64 4/4 Kör skript : libdb-5.3.28-21.fc26.x86_64 4/4 Verifierar : libdb-5.3.28-22.fc26.x86_64 1/4 Verifierar : libdb-utils-5.3.28-22.fc26.x86_64 2/4 Verifierar : libdb-5.3.28-21.fc26.x86_64 3/4 Verifierar : libdb-utils-5.3.28-21.fc26.x86_64 4/4 Uppgraderade: libdb.x86_64 5.3.28-22.fc26 libdb-utils.x86_64 5.3.28-22.fc26 Klart! $ sudo dnf install gnome-tweak-tool fel: db5-fel(5) från dbenv->open: In/ut-fel fel: kan inte öppna Packages-indexet med db5 - In/ut-fel (5) fel: kan inte öppna paketdatabas i /var/lib/rpm Fel: Error: rpmdb open failed $ I guess that there is something wrong with libdb-5.3.28-21.fc26.x86_64 or libdb-utils.x86_64 5.3.28-22.fc26 Some suggestion what to do? -- Regards Jon Ingason ___ test mailing list -- test@lists.fedoraproject.org To unsubscribe send an email to test-le...@lists.fedoraproject.org