Just some rough observations, I am using a visible Proxy configures
through /etc/apt/ and also HTTP_PROXY running on "http://proxy:3128/";
since the early 1990ths. The Hash mismatch rarelly happened to me until
I upgraded to Ubuntu 14.04 and since then I have it a lot on
de.archive.ubuntu.com but still rarelly on eu/gb/nl mirrors. On most
mirrors a quick fix is to clean /var/lib/apt/, /var/cache/squid and so
on but on de mirror this seems to do nothing until the bug simply
disappears after some days even without any interception from me.

I have the odd feeling that the de mirror is just exceptional erratic.

Why am I using a caching proxy? Because it speeds up updating and
installing while using multiple clients (once had more than 100 after
one 2MBit line, right now still five). There is little need to cache
lists, indexes, hashes, keys and so on, I am only interested in caching
the deb Files so maybe there is some workaround to ease the strain on
the proxy?

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https://bugs.launchpad.net/bugs/972077

Title:
  apt repository disk format has race conditions

Status in MAAS:
  New
Status in apt package in Ubuntu:
  Confirmed

Bug description:
  Apt archives are accessed over HTTP; this has resulted in a cluster of
  bugs (reported here, and upstream) about problems behind intercepting
  caches, problems with squid etc.

  There are 3 interlocking issues:
  A - mirror networks may be out of sync with each other (e.g. a file named on 
one mirror may no longer exist, or may not yet exist, on another mirror)
  B - updating files on a single mirror is not atomic - and even small windows 
of inconsistency will, given enough clients, cause headaches.
  C - caches exacerbate race conditions - when one happens, until the cached 
data expires, all clients of the cache will suffer from the race

  Solving this requires one of several things:
   - file system transactions
   - an archive format that requires only weakly ordered updates to the files 
at particular urls with the assumption that only one file may be observed to 
change at a time (because a lookup of file A, then B, may get a cache miss on A 
and a cache hit on B, so even if all clients strictly go A, then B, updates may 
still see old files when paths are reused).
   - super robust clients that repeatedly retry with progressively less cache 
friendly headers until they have a consistent view. (This is very tricky to do).

  It may be possible to do a tweak to the apt repository format though,
  which would allow publishing a race-free format in parallel with the
  existing layout, while clients migrate. To be safe against issue (A)
  the mirror network would need some care around handling of dns round-
  robin mirrors [to minimise the situation where referenced data is not
  available], but this should be doable - or alternatively clients doing
  'apt-get update' may need to be willing to retry to accommodate round-
  robin skew.

  What would such an archive format look like?
  It would have only one well known file name (e.g. Releases-2), which would be 
internally signed. Rather than signing e.g. Packages.gz, it would sign a 
uniquely named packages and sources file - e.g. Packages-$HASH.gz or 
Packages-$serialno.gz.

  Backwards compatibility is achieved by using the same filenames for
  deb's and the like. We need to keep writing Packages.gz though, and
  Releases, until we no longer worry about old apt clients. We can
  optimise disk space a little by making Packages.gz a symlink to a
  Packages-$HASH.gz (and so on for Sources..), but it may be simpler and
  less prone to unexpected behaviour to keep using regular files.

  tl;dr
   * Unique file names for all unique file content with one exception
   * Releases-2, a self-signed file that provides hashes and names the index 
files (Packages, Sources, Translations etc)
   * Coexists with existing archive layout

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