Happens to me too. My home dir is also encrypted. I ran the command from
/home/username like normal. Didn't unmount anything.

** Changed in: apt (Ubuntu)
       Status: Invalid => Confirmed

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https://bugs.launchpad.net/bugs/771780

Title:
  aptitude stopped before finishing of update -
  (unreachable)/SomEdIrEcToRy/  -= (unmounted) =-

Status in “apt” package in Ubuntu:
  Confirmed

Bug description:
  Binary package hint: aptitude

  When i was in a console in some "tmp" directory on some mounted mass
  storage drive (not in /tmp)  I ran update of packages lists with "sudo
  aptitude update", but on the end I've recieved error mesage:

  E: Unable to change to (unreachable)/tmp/ - chdir (2: No such file or 
directory)
  E: Couldn't clean out list directories

  After few minutes I've found out that "Unfortunately" was the external
  drive teared out. After remounting the external drive was the repeated
  this command success full and the error has no more occurred.

  ProblemType: Bug
  DistroRelease: Ubuntu 11.04
  Package: aptitude 0.6.3-3.2ubuntu1
  ProcVersionSignature: Ubuntu 2.6.38-8.42-generic 2.6.38.2
  Uname: Linux 2.6.38-8-generic i686
  Architecture: i386
  Date: Wed Apr 27 03:56:54 2011
  InstallationMedia: Ubuntu 11.04 "Natty Narwhal" - Beta i386 (20110413)
  ProcEnviron:
   PATH=(custom, no user)
   LANG=en_US.UTF-8
   LANGUAGE=en_US:en
   SHELL=/bin/bash
  SourcePackage: aptitude
  UpgradeStatus: No upgrade log present (probably fresh install)

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